|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050499 ID=TCONS_00050499|Name=TCONS_00050499|organism=Clytia hemisphaerica|type=transcript|length=2499bp
CCTTTACCTTTTGATTGGCGGGAAGAGTGTCGTTTATTCACTCAAGCAtc
gtcatttttttctataGCACAGAGACTAAACCTTACCTGTCTTCATGAAA
AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCC
TTTTACACTCCGGGACTGAATTTTGATTGCAGCCCTGTTATTGAAGGGAA
CGTGCTGGCCTTTTCGGATCGGGTTTGCATTGTAAATGGTGACGTATGTG
CATGTAGGCGGTGGATAAATTAGCAACTAGGTTTTTTAATACCAGAATTA
GGCAAGCCAAACTGTGCCCTGGCTGGTTGTACATCCTCGCCAAATTGTCC
CAAAATTAGAGAAGAAAGGAGGTAAGCATAATCTTAAGCAAACTCTTACC
CGTCACAAAGCCATGTCTGTCGAGGGTAAAGGGAGGCAGGAAGAAAATAT
TGGAACAGTAGGAAAATACTTTTGGAAAATGTCTGCTTGGTCGAATTCCC
TTTTCATCCTTCCTTGTCTTGTAGACATTTCGGATACGAACTTCGAGACA
CGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGATTTTGAT
Gatgtttggaaaattttggaggaaaagaatttcgcgaaattcgaagaaat
tttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATGGTGGTT
CGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTTTTCGTT
CACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTATGGTGA
CAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATTTGGAAA
TGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGACAGATGG
AACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGACAACAT
CAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACAATCGAC
GCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATCTTTCGA
TCGTTTCGTTCGTCTtgATTGATTGATTGTTTCCATTGTTTGTTTCATCG
TTTCCAATGGCGTCATCGATTCCGAATTATTTCCACattcccAACATGAC
AGCACGCATGAGAAGTTACACCCGTCATTTTTGACGCCGTTTCTACGATT
ACGTTATTTATTCATTCCATCTCTACATTTCTGTTTGCGTTCAAACATTA
CTTCCTtcattttggcttgtttttagaTGTTTTTTTACCACTTCACTAAC
TTGACTATTATTTTACGTCAACCGTCACTAGCTTCGGTGGCGTGTCTATT
CTTACGCCCTTACGTTTCCATCTTATAGATTACCTTAGTTGAATATGAAT
AAGAGTACAGTGCTAAAACTCGTGTCACtatagcgcaccgcgctgaatct
aataatagattttatttttgacataatcattactctcgatgtgtttatac
gagttccaatcccatcaacatTTGCGCTAATCTCTTTTGCTCGTTAATTg
tatcatttgacaaaagatatataacagcttgcacgtatctttaattgagc
cgcgttgaattgtgggattgcaacttgtacaaatatcaaaaaaagtgaaa
agtaataattatgacgtatgcgttgTGGAGCGCTATTGGTTTCGATTGGA
TCATTTCCCTTGTAAATATCCGACTCTTTTCGCTAACTCGGTGAAATTTT
GTTCAGTCTGTCAGGGAAAAAAATTTAGATACTATTTTTAGTGGAAAACC
CTGTCAACAGTGACCTCGGTGAAAACGTGaatttttctaaccttggctCT
CAGGAATATTTTGTACGGTTTAGGTTTGACATCTCCACGGGTGAAACAAT
CAAGGTTAAAATACCTAAGTTTTTACGGTATTTTTCGGAAGAGACTCATT
GGCAGTAAATATTGGATGGTTTTAATTAGAAATTGCTCTTCATTTCAAGC
CGATGAATGTTTCTTGGTatatatacacccctgtctcacagtccaggtgg
aatttttttcctaagtggggataaaaattcctattgaaatcctaatgggg
atagaaattctattgttctaaagttaaaaatcccaatggggatggttttg
gagtacaatttttaaagatggaatttcgagtgaggatgaaatcaaagtca
atttcccagcggggctgaaattcaaggataTTTTCCcgccggggacgaaa
tttttgcttaattttccagtggggctggggtcccagttgGTCTGTGACAC
GGGTGTATATAAATACGACAAATATTTCTATTATATTAAACTtagataag
aatattttatcCTATAGAATTAATTATAAAAACTTTGTAATCaattgttg
ttttttaattgtaactcttattaatttatttttatttataaaaaattaca
aatcgaCCTTAAAAGAAACTAAGCATTATGAGACAAAAGAAAAAGCCTG Run BLAST on NCBI transcript from alignment at scaffold_178:6999..14791+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050499 ID=TCONS_00050499|Name=TCONS_00050499|organism=Clytia hemisphaerica|type=transcript|length=7793bp|location=Sequence derived from alignment at scaffold_178:6999..14791+ (Clytia hemisphaerica)
CCTTTACCTTTTGATTGGCGGGAAGAGTGTCGTTTATTCACTCAAGCAtc
gtcatttttttctataGCACAGAGACTAAACCTTACCTGTCTTCATGAAA
AAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGAGGGAGCC
TTTTACACTCCGGGACTGAATTTTGATTGCAGCCCTGTTATTGAAGGGAA
CGTGCTGGCCTTTTCGGATCGGGTTTGCATTGTAAATGGTGACGTATGTG
CATGTAGGCGGTGGATAAATTAGCAACTAGGTTTTTTAATACCAGAATTA
GGCAAGCCAAACTGTGCCCTGGCTGGTTGTACATCCTCGCCAAATTGTCC
CAAAATTAGAGAAGAAAGGAGGTAAGCATAATCTTAAGCAAACTCTTACC
CGTCACAAAGCCATGTCTGTCGAGGGTAAAGGGAGGCAGGAAGAAAATAT
TGGAACAGTAGGAAAATACTTTTGGAAAATGTCTGCTTGGTCGAATTCCC
TTTTCATCCTTCCTTGTCTTGTAGACATTTCGGATACGAACTTCGAGACA
CGGCACGTCAGGAGAGAGTGACAATCGATGGAACGAAATACGATTTTGAT
GGtaagtttatttttttggaaatgagcAACCTTGATTTTCTGTTATGAAC
GGTTACGTTGGTTTCCCATTTGTTGCATTGTCAAAAATGTTGTGTGTATA
TTTTAATGATGTACTTTTACTTTCTTGGGAAACGTTCATATTCTCTTATT
ATTAGGTTCAAAATAAGCGGGGGACTATTTCGAAcaaaataagggacctt
ctccTTGAAAgctatgaatattttttttaaataattaaagGTAGGTCCTT
ATGAAGTCAGGggtattggaaaattttcaaaaaataaacaagtggtgggg
gggcgtttatttggaaccatTGAGTAATCCTTCTTATCTTATTCTTAAGT
TTAATGAACACTTCAGTCTAATGAGCACAATCAGAATGCTTTTTGGAAGA
GTAAAAAATACTTTCATACTTTCTGAGACCGGCTATAAAGGGCTCCATgt
cacttgttcgacagtacgTTTGTTTGACAGCCCAATTATTCAACattctt
caatttttagatgaaattgtcgaacaactgagcTGTGGAACATGTTGAAA
TCTCAGTTATTCATCAGCCAGTTGTTCGAAAATTTAATTGATCGACAGTA
ACTTTAttccctttcctatctttcaTTCACGCACTTTTATGATTTGATTA
ATTGAGAAGATCGGATAATGGATGGGAAATAATATTTCTCGAAATCAATA
AGGAGAACGCGGGTTGCAAATACTGACAACCGGAATAGTCAAGCAACTGG
TTCGTCGAAATAAATCATTGACAATTTGTGCAAAAACTCGGTTAAATGTT
TTATGTAAATGTCGAATAAGTGAGGTTTCTGACAACCCAAAGCAACTGAG
CGTTCACTTGTTTGGCAGTGCAGTTGTTAGACAAATCAAATGTAGTCAAA
AACACGTATTCTCGAGCAAGTCGGATTTCTCCCTATAAAGAGCCGATGAT
CGGTTAAATAGatactaccttattggaactaattttcgcgggttttaatt
ttagcgtttttcgcggtttttcgtcaaaatcacgaaaatttgaacccgcg
aaaaattttgagagtcgaaaaccgcgaaaattaattcccgcgaaatacaa
ttttttccaattttatcgaaaaatttggaaaatccctaggaaaatgaaag
aaatttgtccaaaaaaaggcaaaaccgctaaaattaaaacccgcgaaaat
tactgaatggaaaaaaccgcgaaaattcaaacccgcgaaatgcaattttt
tggaatttttttttcgaccgcgaaaattagttcccgcgaaaattagttcc
aataaggtacactATGAATAGATAACAAAGGTAGTGAAAATCTCTACCCT
TACACTAAACAAGAGCTGATTGAAAGGCTGAATTTGGCACGATCATTCCT
CTTTTCTCAATTCCTGTTTGAGCCCAACAGTTGGGGTCTCAGCATGTCGG
GTATGTGAAAATTTGGTGAAGTGAGGGTCATAAAAACTTTGATCTAAGAA
TTGGAAATACAATCTCTCATCAAAGGATCGTTTTTCGAACTTAGGCACAA
ACATACCCGTCAACCTTACATCCCCTAGAGATTATTTTCccaaaagtttt
tgatatttcgTAATTTTGGTCCCCATCGCGCAGAATTGACAGTACGTTTT
TTGTAATGCATCAAAACCCAGGGGTTTAACGTCAggggtttgacgtcact
ttttaaCGTCACAAAAAGTCGTTTTCAAATTTCTCTTTACATTCTTCAAA
TGTCTTCTAGAAGGCtaactttgtttttttcgaAACCCTGTAACTTCCct
ctttcaaatgatatcaaaaTAGTTTTATTCTAGAGTTTTAATCGAAAAGC
CTAGGGTATTTTACAAAGACAATCTTTTCTAGCTGAAAACCTAAGACTTA
TCAATTTTGTAAGTgctttaaaagaaagaaaaacccCTCCTGCAATTTTC
GAGTACTCcaagaaaaaactttattctttcttttttccaaaccgggtact
aggtttgcgaggtgaaaataagattagagagagacaaaaatttgcgtttt
tgggacccttagagagacttttcccaAAATCTTTGtcgattttcactcga
tttttgtccaaatttttggaAACCACGACCCTTAGAGAAAAATTCgatta
cagagactcaatttgctttttaatgctttttgtacccctttgagagactt
tcaagGGTGTGAAAAATGGACCCTTTATGACTGGGGGGTTTGCGAGgctt
gaaaatgctctaaaaatagcattcttagcttgagtagcaaaattctatga
tggtgatattcttagcattattcctaattttttggccattttcacaatgg
acattcttataaagtgtattcttataaaaagggtGTATATTGATTTGGTT
Ttgtcacatttttttttttttggcattttcatataatttttaaaaacaaa
agggaGAAATTTCAAGCGATATCATATAGTCATACTGGCTCAAGCAAACG
TTATAGAAATTCAAGAATGCAAAGTTCGGggcaaaaattactgtagggta
AAACCgcggtaggatttcctaccaaagaaatcacgtgacaataAGCAATT
taactggtttgagagatgcgaaatagcgtttgccgcctactttttttgat
ctcgcgctccgaaaacaattaaaatgctagagcCTATCCAtaggcacgaa
atttaaaaaagtcaaatttttgcttcacttttttttgctggagaaagctt
aatcctttaagtgccacggtcatttttttctaagttttttaaagaaaatc
gctatttcaaactttaaaggcttatatctccggatctagaaggagttaga
agcttgtttatagtccgttggatagcttagagtctcctctttcttttagg
cgcctTCGGCCTTAGGCGGACTtgactgaatgatagaaaggtacCGAGCG
GTAAAGcttcaaactaattcgctggaggacaaAATCAAGTTAATCAGGgt
caaatttggaggttcttggatcactcgttgaccaaaaatggtcaaaaacg
gtcaaaatcttaaaaaaagtggatttttgtcaagtgtttgcatttttttg
actatctagcttaaaatctcgctgaaaagactcacttttgattttctttt
tgcttggcCATGACGCCCAATCCGATTCCTACGAGTTaaaccaaaaatga
cgatttctaattCAAACTTGACattcctacatagcccatgtttgatatat
acgacatgggcacttaaagggttaaagttgcctatctagtaAAAACCAAT
TGGTATCAAATGACAAATGTAAGATTTTGTAACCTTATAAATCTTGAATT
TTCAAGACATtttgtcttttatgttttaaagtaatttaaaaagaagaaaa
tcttttacgATATTGGGAGGTCTCTAGAAAGCATCAAATGAAATCGACAG
GAGTGTTGTCAATTTCATTCTCAAGGgagttttttttatcatataaAGAG
AAATATCTGTTGAGTATTTTCGTTCATTTCTTATTTAATTTGGTGGGGCT
TGTTGAGTGGTTGTTTGTGCACAAATAGTACGTTAATATTTTTGGAATGT
TGAATAATATTTCATCAGGTAAAATAATTTACTATACAGTAGAAGGagct
ttttctgaaaaagttcTGTAGACGTGTTGAAAATATTAGTTTGctctgaa
aaaagatttttcaaagtccTTTATTCGGGAGAAACAGAACCTTTGATCGA
CTAAGATATTCATCTTTTAAAGTTTACTTTTTACCTAAGTTTATCGGGAT
ATTGGGCCCTTTTTGCAGACTAAAACTAAACGTAATTTTTTAACCATTGA
TCAGCAAAcgaatcaaaattttcttttcaattttttcaaattttaaaatt
ttgagtatctttctcgttttttttcccttaaaactttttaagtCCGAAAG
AATAATGACggaattattaaaattttcggttttaccttataaaaaaagct
attTCTTTACTGAGCGAAAAGTTcttaactaaattttttttctctatcaA
TTTGGAAACCATTTTCccaatctttgtgcaaaattttgactttgaacGAT
TTTCAGTTCTCTAGATATCGAAGTTCAGTTTAAATTTTTTGCAGTCatga
ataaaaatgatttattgcttggcaaaaagttttcattcaaaaatgaaaat
tttttcgctatcaattcggaaatatttttctcgttctgtttacaaaattt
cagctccaaaataattttagttccTGAGATATCGagattcattttttgtt
gaacttttttatttactccgtgaaaagtttgaatttcttctttttttctt
cagatgtttggaaaattttggaggaaaagaatttcgcgaaattcgaagaa
attttCCGCCAAAAACCGAACATCGTCAACTCGTTGCGTGATGATGGTGG
TTCGACACTTCTCATGTATGCTGTTTATGAAAAACGTTTCGACGTTTTCG
TTCACTTGATGAAATTTCCTCAAGATTTTTCACTCGTGGACAATTATGGT
GACAACATTCTTCATTTTGTTGGTGTGAATGGAAAAGTTCGTCATTTGGA
AATGTTTGATCAACAAACAATCGAAATGTTGATCAATGGAAGAGACAGAT
GGAACGAAACACCGTTGCATTTTGCAGCACGTCGCAACAATCATGACAAC
ATCAGATGGTTGTTGGCCAAAGGAGCGGATCCTAAATTGAAAAACAATCG
ACGCCCTGATGAATATTATGAATGTGATGGTGTTACCGAAGAAATCTTTC
GATCGTTTCGTTCGTCTtggtaagaaaaatatcaactttttcatgatttt
ttttaggattgaattattttttggaaataatttttttctattattgcGAG
AAGTgttgaaacttttctttttttattaaatagAAGTGAAAATTTATTAA
GAAagtctttaaatttttcattcggataaatttttccttttcggAGTTCG
AATGAATGAAACGGATGAATTGATTTCGATATTTTGATTAAGATTTTTCA
TCGCATTGAAGCAGACATTTTTTGGAGACGGTTGGAATTTGCAAATAGAT
GGTTGTCTGTGAAATATTTTCTCAGGTTGCTATGAGTTTATTTTTTGGCG
GAGAAGGAAATTGtcgttttttgttattttttagtaCCCTTCTTATGATA
TTGTTTCAAATGCTTTTCATTCGATTAATTATTTTTCAGATTGATTGATT
GTTTCCATTGTTTGTTTCATCGTTTCCAATGGCGTCATCGATTCCGAATT
ATTTCCACGTAAGTATATTTAATCATTTTTCCGGCTGATGTGAAATTGCC
TAAGGGCTGAAATTTTCTAAATACcggaattttttgcaaaaagtgaATCC
ATTCAAAAATCTTAGAAAGGAGGGCTTggttagcctgtaccaaactcttc
ttggTAAACTGAAAAAAGCAAGGAAAATTCAGTATGTTTGGACTTTTATG
TGACTGAGACGAATCCACGCAAATCTCGGCTGTAAAGTGTTGAACTATTT
TCAGAATTAAGCTTCTTCAATTAGTCGAATAAATGCAATTGTTTCTTTCT
GTATTAAAGATAGCgtataaagcctaaaatacctcaatttgaCCTTGAAG
TAAGAAAATGGGTTACACTTCAAAGATTTGCTAGTTCTTATAGAAAGACT
CCGTATTCcgtgattttcaaacttttccaaCACATCAGATTTTCAGCATT
CTCATTAGCCgctttaaaaaaacatttattcgAGTCAGCAAGTTTTATTT
TGCAATTaatctccaaatttttatttttagattcccAACATGACAGCACG
CATGAGAAGTTACACCCGTCATTTTTGACGCCGTTTCTACGATTACGTTA
TTTATTCATTCCATCTCTACATTTCTGTTTGCGTTCAAACATTACTTCCT
tcattttggcttgtttttagaTGTTTTTTTACCACTTCACTAACTTGACT
ATTATTTTACGTCAACCGTCACTAGCTTCGGTGGCGTGTCTATTCTTACG
CCCTTACGTTTCCATCTTATAGATTACCTTAGTTGAATATGAATAAGAGT
ACAGTGCTAAAACTCGTGTCACtatagcgcaccgcgctgaatctaataat
agattttatttttgacataatcattactctcgatgtgtttatacgagttc
caatcccatcaacatTTGCGCTAATCTCTTTTGCTCGTTAATTgtatcat
ttgacaaaagatatataacagcttgcacgtatctttaattgagccgcgtt
gaattgtgggattgcaacttgtacaaatatcaaaaaaagtgaaaagtaat
aattatgacgtatgcgttgTGGAGCGCTATTGGTTTCGATTGGATCATTT
CCCTTGTAAATATCCGACTCTTTTCGCTAACTCGGTGAAATTTTGTTCAG
TCTGTCAGGGAAAAAAATTTAGATACTATTTTTAGTGGAAAACCCTGTCA
ACAGTGACCTCGGTGAAAACGTGaatttttctaaccttggctCTCAGGAA
TATTTTGTACGGTTTAGGTTTGACATCTCCACGGGTGAAACAATCAAGGT
TAAAATACCTAAGTTTTTACGGTATTTTTCGGAAGAGACTCATTGGCAGT
AAATATTGGATGGTTTTAATTAGAAATTGCTCTTCATTTCAAGCCGATGA
ATGTTTCTTGGTatatatacacccctgtctcacagtccaggtggaatttt
tttcctaagtggggataaaaattcctattgaaatcctaatggggatagaa
attctattgttctaaagttaaaaatcccaatggggatggttttggagtac
aatttttaaagatggaatttcgagtgaggatgaaatcaaagtcaatttcc
cagcggggctgaaattcaaggataTTTTCCcgccggggacgaaatttttg
cttaattttccagtggggctggggtcccagttgGTCTGTGACACGGGTGT
ATATAAATACGACAAATATTTCTATTATATTAAACTtagataagaatatt
ttatcCTATAGAATTAATTATAAAAACTTTGTAATCaattgttgtttttt
aattgtaactcttattaatttatttttatttataaaaaattacaaatcga
CCTTAAAAGAAACTAAGCATTATGAGACAAAAGAAAAAGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050499-exon-scaffold_178-1491911889:6999..7599 | TCONS_00050499-exon-scaffold_178-1491911889:6999..7599 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1510915933:6999..7599 | TCONS_00050499-exon-scaffold_178-1510915933:6999..7599 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1575043694:6999..7599 | TCONS_00050499-exon-scaffold_178-1575043694:6999..7599 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1491911889:11952..12417 | TCONS_00050499-exon-scaffold_178-1491911889:11952..12417 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1510915933:11952..12417 | TCONS_00050499-exon-scaffold_178-1510915933:11952..12417 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1575043694:11952..12417 | TCONS_00050499-exon-scaffold_178-1575043694:11952..12417 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1491911889:12838..12906 | TCONS_00050499-exon-scaffold_178-1491911889:12838..12906 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1510915933:12838..12906 | TCONS_00050499-exon-scaffold_178-1510915933:12838..12906 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1575043694:12838..12906 | TCONS_00050499-exon-scaffold_178-1575043694:12838..12906 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1491911889:13429..14791 | TCONS_00050499-exon-scaffold_178-1491911889:13429..14791 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1510915933:13429..14791 | TCONS_00050499-exon-scaffold_178-1510915933:13429..14791 | Clytia hemisphaerica | exon |
| TCONS_00050499-exon-scaffold_178-1575043694:13429..14791 | TCONS_00050499-exon-scaffold_178-1575043694:13429..14791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_178 | supercontig | scaffold_178:6999..14791 + |
Blast
The following BLAST results are available for this feature:
|
