|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050758 ID=TCONS_00050758|Name=TCONS_00050758|organism=Clytia hemisphaerica|type=transcript|length=1177bp
ATTAGATTTGGGGTAAAATAATCCATGTGAATCGATTTTACAAAATCTAA
TTGAGTGTTCAAACGTCAAATCGATTAGCGACCATAAAAAGCCgtgaacg
aaaaataaaaaaatattaaaaagaaaaaaaatatcaacaaaaaataaaaa
cagatcTAAACTGTTGTAGAGAGGCCCCACTTTGTGGCACGAATAGCCTC
CTTCTTCAGCCTTAAATATATAGTACCCTTTTCCCAGGGATTTTGAAGTT
TTAACAGATGCAGTTCATCCCGCAGGACGCGTTCCCGTGATCCAGCAACA
ACAACCAAtgcaagatttttcaaattcttctcAGACAACAGTTCTTTAAT
TGGTTCAGAATCCAAACTTTCAGgttctaataaaaattgTCGGGCCGCTA
AAAGAACAATATCAAGGGCCGTCGTGTTATCATCAACAGTAACTGTCGTA
TATTTGGTTGCTTGGAAACCAATTTCTTCGGTCCCGTATATTTTTAACGA
CACTGGCGTCGTCGCCGTTGCCGTCGCCGTTGCCGTCGCCGTTGCTGAAG
GTGACGTCGGGGAAGGAAGTTCGTTTGATGTTTCCGTGCTACTAATCGAT
TCAGAGTCCCGCTCACGATCTGATAAAGCACACGGTATACTATTCACCGA
CGCTTGACTCGTTAACGATAATCGGTTATTAATGACGTCACACCATGACG
TCACGCCGAAAAGTGTATTTAACGGAACGCCGACATTTAAGTTCTTCTCT
TGACATGATTGTAAAGTATCAAATATCCATCGACTCACTTTCCACAGGTC
GTCAACGTTTTGTTGATAATTGGATAATCGAGACTGCTTATTTTTCAAAG
TCCTCGTCTCATCATGACAAATTGATTCTCGAATTGCTTGTTGTACGCTT
AAATTTTCTAATTCTAGTATACTTGACAACCGACAGTACGAAGACATAAG
TTTAGGTTGATAAGTCATCATATTGTTCATTTCAAATGATTGAACCGGTA
ATGCCGAGTAGGCGCTTGAACTAGAAAAATTGTCTGATTGGTTTGGTGGT
GTACAAACTTCGTTTGGGAAAATAAGAATAAACATGACGTCAGAATTGAG
CTCGATAACCTCTTGGTCATAAACGCGGTGTGACAATGCAACCTGAAAAA
TTGGGAATAAAAGATTACAGTCTGTCA Run BLAST on NCBI transcript from alignment at scaffold_185:222773..224002- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050758 ID=TCONS_00050758|Name=TCONS_00050758|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at scaffold_185:222773..224002- (Clytia hemisphaerica)
ATTAGATTTGGGGTAAAATAATCCATGTGAATCGATTTTACAAAATCTAA
TTGAGTGTTCAAACGTCAAATCGATTAGCGACCATAAAAAGCCGTGAACG
AAAAATAAAAAAATATTAAAAAGAAAAAAAATATCAACAAAAAATAAAAA
CAGATCTAAACTGTTGTAGAGAGGCCCCACTTTGTGGCACGAATAGCCTC
CTTCTTCAGCCTTAAATATATAGTACCCTTTTCCCAGGGATTTTGAAGTT
TTAACAGATGCAGTTCATCCCGCAGGACGCGTTCCCGTGATCCAGCAACA
ACAACCAATGCAAGATTTTTCAAATTCTTCTCAGACAACAGTTCTTTAAT
TGGTTCAGAATCCAAACTTTCAGGTTCTANTTCTCAGACAACAGTTCTTT
AATTGGTTCAGAATTCAAACTTTCAGGTTCTAATAAAAATTGTCGGGCCG
CTAAAAGAACAATATCAAGGGCCGTCGTGTTATCATCAACAGTAACTGTC
GTATATTTGGTTGCTTGGAAACCAATTTCTTCGGTCCCGTATATTTTTAA
CGACACTGGCGTCGTCGCCGTTGCCGTCGCCGTTGCCGTCGCCGTTGCTG
AAGGTGACGTCGGGGAAGGAAGTTCGTTTGATGTTTCCGTGCTACTAATC
GATTCAGAGTCCCGCTCACGATCTGATAAAGCACACGGTATACTATTCAC
CGACGCTTGACTCGTTAACGATAATCGGTTATTAATGACGTCACACCATG
ACGTCACGCCGAAAAGTGTATTTAACGGAACGCCGACATTTAAGTTCTTC
TCTTGACATGATTGTAAAGTATCAAATATCCATCGACTCACTTTCCACAG
GTCGTCAACGTTTTGTTGATAATTGGATAATCGAGACTGCTTATTTTTCA
AAGTCCTCGTCTCATCATGACAAATTGATTCTCGAATTGCTTGTTGTACG
CTTAAATTTTCTAATTCTAGTATACTTGACAACCGACAGTACGAAGACAT
AAGTTTAGGTTGATAAGTCATCATATTGTTCATTTCAAATGATTGAACCG
GTAATGCCGAGTAGGCGCTTGAACTAGAAAAATTGTCTGATTGGTTTGGT
GGTGTACAAACTTCGTTTGGGAAAATAAGAATAAACATGACGTCAGAATT
GAGCTCGATAACCTCTTGGTCATAAACGCGGTGTGACAATGCAACCTGAA
AAATTGGGAATAAAAGATTACAGTCTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050758-exon-scaffold_185-1575043694:223630..224002 | TCONS_00050758-exon-scaffold_185-1575043694:223630..224002 | Clytia hemisphaerica | exon |
| TCONS_00050758-exon-scaffold_185-1575043694:222773..223576 | TCONS_00050758-exon-scaffold_185-1575043694:222773..223576 | Clytia hemisphaerica | exon |
| TCONS_00050758-exon-scaffold_185-1510915933:223630..224002 | TCONS_00050758-exon-scaffold_185-1510915933:223630..224002 | Clytia hemisphaerica | exon |
| TCONS_00050758-exon-scaffold_185-1510915933:222773..223576 | TCONS_00050758-exon-scaffold_185-1510915933:222773..223576 | Clytia hemisphaerica | exon |
| TCONS_00050758-exon-scaffold_185-1491911889:223630..224002 | TCONS_00050758-exon-scaffold_185-1491911889:223630..224002 | Clytia hemisphaerica | exon |
| TCONS_00050758-exon-scaffold_185-1491911889:222773..223576 | TCONS_00050758-exon-scaffold_185-1491911889:222773..223576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:222773..224002 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000159 | RA_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
Blast
The following BLAST results are available for this feature:
|
