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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050773 ID=TCONS_00050773|Name=TCONS_00050773|organism=Clytia hemisphaerica|type=transcript|length=1985bp
catAGCCAGCTCCTAAAGATACAAAAGAAATGTTACACTTACATTGTGAA
AATAATcgataaaagttgaaaataactTCACTTGTCTACTTGTCTactta
caaagaaaatttgaccTCTATATATACTAGGTCCTAAAGATACAAAAGAA
ATGTTACACTTACATTGTGAAAATAATcgataaaagttgaaaataactTC
ACTTGTCTACTTGTCTacttacaaagaaaatttgaccTCTATATATACTA
GGTCCTAAAGATACAAAAGAAATGTTACACTTACATTGTGAAAATAATcg
ataaaagttgaaaataactTCACTTGTCTACTTGTCTacttacaaagaaa
atttgaccTCTATATATACTAGGTCCTAAAGATACAAAAGAAATGTTACA
CTTACATTGTGAAAATAATcgataaaagttgaaaataactTCACTTGTCT
ACTTGTCTacttacaaagaaaatttgaccTCTATATATACTAGGTCCCTA
CTCTTAAAATAAATTGTATTACTTGATTACATAATGAGTTCGGGGTTAAT
GGCGTTAGCCTTAGcatttcaaaataacatagTCGTAAAATGAATATAAA
GAAGGCTTAACAGGAAGGTAATTAAATAAAGGGATTGAAAGTAGTTAAAG
GGGTCAAACAAAAGAGGTAATGGCAAATCGCCTTCTGATGAGCAAATATA
GTTTGATATTGACTTCAATTATGGGAAGACGGGGAAATGGGGAAGGGATA
AATGGTTTCCTGAGATTATGTAACCTCGGGTCTCTGTACGAATCCAAAGG
TTCATTTAGTGGTGTGTTCAGAATTTCATTGAAACACGACAATTCGaata
tttttattgtatttaATATGTTAGTTGTCATTCGAACTTTTATTAAGTGA
CAAAAGGAAGATcgaaaaaatttatgaaaaaagtaaGTAAAAAGGAGGAG
TGGctgaattttaattcaaatattttgaaatattttcgatGAACCTCTGG
ATTATTATTCCCAAATCACCCTacaaaccatgttattactagtacttaGC
TTTTCCTTTCCCATTATAGGTTAACATCTTGCATGCCTGATCTTCGCAAA
ACTCTTTAACACAAAAATCACATAcacttttcaaaatatcaaggAAAATT
AATTAATCATtaataattacaaaataatcaaagaaatcgcaaaaaaaaat
acaaacaatCAATTTTGTGAggtaaaaagtcaaaatgaaaatgcaaaata
aaaagtcacaaaaaaatctcaaaaaacataaaaaaataaacCTCTTCGTG
TTTACAAAGGGATACCATACTTGTAGCCGGACAGAAAATGAATGGACACA
TGTAttcgtaacttttgattcaaaCTGAATGAATAAAAGAATGACCAGAT
TTAATCTACCTTATCGGGGGGGGggaatgtcggagttttatttagtcggt
tTTTTTATTTGGccgggaaaaatttcgtcacttagAGGCATgttgtcact
tttccccgaccaaaatttcaaactcgtcactttcacccgactaaacTGTC
TAAAAGAAAGGGTTTCCTTCGTTAGCTCGAAAATGGATCTTGTAATTCat
cgtttaaagcactaatttcggtatttaaaggtgtaaaaaaattattagat
ttaaattttggttgtggtataaaattttgggtaaaagttttggtcgggga
taaaaaaatcggatACACCCGACCAAAGGTGATAAAATGTTGGGAAaata
tttcgtcggggaaaaattcaacccttcaaaattttcgtcactttcccccc
gATAAAGTGTGATAAAGTgagaataatgaaaaataatgaaaatattgaca
aagtattttagagaaaaatatgGCAAATCTAAGTTAATAAACTAAATAAA
TTCTTACCAACTTGCCAGAAATATATGTGGTGTGAGTTCTGTCCACGAAA
GTAGAACGAAAATTGATCATGAAATTTGTGTTGAA Run BLAST on NCBI transcript from alignment at scaffold_185:274806..276790 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050773 ID=TCONS_00050773|Name=TCONS_00050773|organism=Clytia hemisphaerica|type=transcript|length=1985bp|location=Sequence derived from alignment at scaffold_185:274806..276790 (Clytia hemisphaerica)
TTCAACACAAATTTCATGATCAATTTTCGTTCTACTTTCGTGGACAGAAC
TCACACCACATATATTTCTGGCAAGTTGGTAAGAATTTATTTAGTTTATT
AACTTAGATTTGCcatatttttctctaaaatactttgtcaatattttcat
tatttttcattattctcACTTTATCACACTTTATcggggggaaagtgacg
aaaattttgaagggttgaatttttccccgacgaaatattTTCCCAACATT
TTATCACCTTTGGTCGGGTGTatccgatttttttatccccgaccaaaact
tttacccaaaattttataccacaaccaaaatttaaatctaataatttttt
tacacctttaaataccgaaattagtgctttaaacgatGAATTACAAGATC
CATTTTCGAGCTAACGAAGGAAACCCTTTCTTTTAGACAgtttagtcggg
tgaaagtgacgagtttgaaattttggtcggggaaaagtgacaacATGCCT
ctaagtgacgaaatttttcccggCCAAATAAAAAaaccgactaaataaaa
ctccgacattccCCCCCCCCGATAAGGTAGATTAAATCTGGTCATTCTTT
TATTCATTCAGtttgaatcaaaagttacgaaTACATGTGTCCATTCATTT
TCTGTCCGGCTACAAGTATGGTATCCCTTTGTAAACACGAAGAGgtttat
ttttttatgttttttgagatttttttgtgactttttattttgcattttca
ttttgactttttaccTCACAAAATTGattgtttgtatttttttttgcgat
ttctttgattattttgtaattattaATGATTAATTAATTTTccttgatat
tttgaaaagtgTATGTGATTTTTGTGTTAAAGAGTTTTGCGAAGATCAGG
CATGCAAGATGTTAACCTATAATGGGAAAGGAAAAGCtaagtactagtaa
taacatggtttgtAGGGTGATTTGGGAATAATAATCCAGAGGTTCatcga
aaatatttcaaaatatttgaattaaaattcagCCACTCCTCCTTTTTACt
tacttttttcataaattttttcgATCTTCCTTTTGTCACTTAATAAAAGT
TCGAATGACAACTAACATATtaaatacaataaaaatattCGAATTGTCGT
GTTTCAATGAAATTCTGAACACACCACTAAATGAACCTTTGGATTCGTAC
AGAGACCCGAGGTTACATAATCTCAGGAAACCATTTATCCCTTCCCCATT
TCCCCGTCTTCCCATAATTGAAGTCAATATCAAACTATATTTGCTCATCA
GAAGGCGATTTGCCATTACCTCTTTTGTTTGACCCCTTTAACTACTTTCA
ATCCCTTTATTTAATTACCTTCCTGTTAAGCCTTCTTTATATTCATTTTA
CGActatgttattttgaaatgCTAAGGCTAACGCCATTAACCCCGAACTC
ATTATGTAATCAAGTAATACAATTTATTTTAAGAGTAGGGACCTAGTATA
TATAGAggtcaaattttctttgtaagtAGACAAGTAGACAAGTGAagtta
ttttcaacttttatcgATTATTTTCACAATGTAAGTGTAACATTTCTTTT
GTATCTTTAGGACCTAGTATATATAGAggtcaaattttctttgtaagtAG
ACAAGTAGACAAGTGAagttattttcaacttttatcgATTATTTTCACAA
TGTAAGTGTAACATTTCTTTTGTATCTTTAGGACCTAGTATATATAGAgg
tcaaattttctttgtaagtAGACAAGTAGACAAGTGAagttattttcaac
ttttatcgATTATTTTCACAATGTAAGTGTAACATTTCTTTTGTATCTTT
AGGACCTAGTATATATAGAggtcaaattttctttgtaagtAGACAAGTAG
ACAAGTGAagttattttcaacttttatcgATTATTTTCACAATGTAAGTG
TAACATTTCTTTTGTATCTTTAGGAGCTGGCTatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050773-exon-scaffold_185-1491911889:274806..276790 | TCONS_00050773-exon-scaffold_185-1491911889:274806..276790 | Clytia hemisphaerica | exon |
| TCONS_00050773-exon-scaffold_185-1510915933:274806..276790 | TCONS_00050773-exon-scaffold_185-1510915933:274806..276790 | Clytia hemisphaerica | exon |
| TCONS_00050773-exon-scaffold_185-1575043694:274806..276790 | TCONS_00050773-exon-scaffold_185-1575043694:274806..276790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:274806..276790 . |
Blast
The following BLAST results are available for this feature:
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