TCONS_00050786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050786
Unique NameTCONS_00050786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050786 ID=TCONS_00050786|Name=TCONS_00050786|organism=Clytia hemisphaerica|type=transcript|length=477bp
aaacaaaaaaaacaaaaacatacaGTTGACGGCAAACTGCAGTTGACCTT
TTGTTTTTTGCTGTTCAGGATATCTTGTTGAACTAGGTCACAGTTTGCTT
CAGAGCAAACTGATCCATTGTATACAGCTTCCTGATATTCCATATCCTTC
AAGTTTCTTCAGCAAACACAAGTGACGGTAGGGAACAGTATCGAGGGCTT
TTAATAAtagcaaaatcgaaatatatatCATTGTAATCAACTACTTTACT
TACTCACTTCAGTATACTTcagtttgatttgatgatattcATCTGTCCAG
CTCATTGAGCCCAACACGtataatttgatcgaaaagaGCATTTGATTCAG
CCAATCTTGTTTGTCGCGACGTAGTAGTGTGAGGCTCGTCAGAATAGAGC
ACAGATATTTATTGAGTCGTTTCTTGAATGAATCTTTTAAACAGCCAGTG
ATATTTCGTATGTCAGAGGGAATACTG
Run BLAST on NCBI

transcript from alignment at scaffold_187:29179..29655+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050786 ID=TCONS_00050786|Name=TCONS_00050786|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at scaffold_187:29179..29655+ (Clytia hemisphaerica)
aaacaaaaaaaacaaaaacatacaGTTGACGGCAAACTGCAGTTGACCTT
TTGTTTTTTGCTGTTCAGGATATCTTGTTGAACTAGGTCACAGTTTGCTT
CAGAGCAAACTGATCCATTGTATACAGCTTCCTGATATTCCATATCCTTC
AAGTTTCTTCAGCAAACACAAGTGACGGTAGGGAACAGTATCGAGGGCTT
TTAATAAtagcaaaatcgaaatatatatCATTGTAATCAACTACTTTACT
TACTCACTTCAGTATACTTcagtttgatttgatgatattcATCTGTCCAG
CTCATTGAGCCCAACACGtataatttgatcgaaaagaGCATTTGATTCAG
CCAATCTTGTTTGTCGCGACGTAGTAGTGTGAGGCTCGTCAGAATAGAGC
ACAGATATTTATTGAGTCGTTTCTTGAATGAATCTTTTAAACAGCCAGTG
ATATTTCGTATGTCAGAGGGAATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032169XLOC_032169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050786-exon-scaffold_187-1491911889:29179..29655TCONS_00050786-exon-scaffold_187-1491911889:29179..29655Clytia hemisphaericaexon
TCONS_00050786-exon-scaffold_187-1510915933:29179..29655TCONS_00050786-exon-scaffold_187-1510915933:29179..29655Clytia hemisphaericaexon
TCONS_00050786-exon-scaffold_187-1575043694:29179..29655TCONS_00050786-exon-scaffold_187-1575043694:29179..29655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_187supercontigscaffold_187:29179..29655 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639407	0.592328	0.760294	1.11845	12.7049	11.319	4.43221	8.25556	1.25446	2.34056	3.68048	3.67263	1.96393	1.39378	0.517137	1.61967	2.20938	2.23879	0	1.64409	2.56245	0.680364	0.692917	0.780137	2.75076	2.62524	0.750493	0.98939	0.575604	0.224482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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