TCONS_00050793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050793
Unique NameTCONS_00050793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050793 ID=TCONS_00050793|Name=TCONS_00050793|organism=Clytia hemisphaerica|type=transcript|length=235bp
TAAATAATGACGAAATGGAGTTTCTGATAGAAGAAAATAGCACTGAAGAG
CACGCGGACAGCCAGTTAGAAATAGAAACAGCAAATCGATCAACTTTTAG
CCAAGAACACAGTAGATTAGAAACATCATCATCTCCCTCTATCCAAGAAC
ACAGTAAATCAGAACCATCTCCCTCTATCCAAGAACACAGTAAATCAGAA
CCATCTCCATCTATCCAAGaTGAAAAGGACAAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_188:11844..13018-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050793 ID=TCONS_00050793|Name=TCONS_00050793|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_188:11844..13018- (Clytia hemisphaerica)
TAAATAATGACGAAATGGAGTTTCTGATAGAAGAAAATAGCACTGAAGGT
ATTTTTCTTGCAAGTAGATTCTATTTGATGATCAATCTCCTCTAATAAAG
TCTAATAATTCATAAGTTATAAATATGTGAAGAGTTTTACTTTAATATTT
TTTCAATAAATTGAAATTTAAAAAATATTCACATTTAAAATCGCCAAAGT
TTCCCTTACATTGGTCTAAAGTTTATTGTCATAATACCCGTAGAAAATGT
TCCATCGATGTTCATTACCTTAAAGGTATTTAACTTCGCAGGTATTTAAT
TGATGAAAGAAATTGGTGAAAAGCAGTTAAAATCACGAAATTAAATACCC
GTGAAATTAAATACCTTTAAGGTATATATTGTTTCCTTACAGAGCACGCG
GACAGCCAGTTAGAAATAGAAACAGCAAATCGATCAACTTTTAGCCAAGG
TATTGAAACTTAAAAACATATTTAATATTGAGATAATGATTCAAAACGGT
GAGACCTATGGACGTAAACATAATGTAATGTTTTTGAGATTTTTTCTCTT
TTTACAGAACACAGTAGATTAGAAACATCATCATCTCCCTCTATCCAAGG
TATTGAAATTAAAATAAACATTTAATTTTCAAATGTCTTTATAAACCTCC
TATAAGATTTTATTGTGTATTGCCCATTATTTTCACTGACACATAATGTA
ATGTTTTGAGATTTTTTCTCTTTATTATAGAACACAGTAAATCAGAACCA
TCTCCCTCTATCCAAGGTATTGACACTACTTAAAATCATATTTAATCTTC
AGGTGTTTTTATAAACCTCCAATAAGATTTTGCTGTGTATTGCCCATTAT
TTTCTTATTACGTTACGATTGCTGGTAAANATGTTGTTATAAACTTCCAA
TAAGATTTTGTTGTGTATTGCCCATTATTTTCTTATTACGTTACGATTGC
TAGATTGGTAAACCTAAACATCTAGAAACATCATGTAATTTTTTTGAGAT
TTTTTCTCTTTATTATAGAACACAGTAAATCAGAACCATCTCCATCTATC
CAAGGTATTGACACTTTGTAACATTTTAGTACATGTTGGTAATCTTCTGT
GTGCTTGTTATTTTACTCTTGGTGAAATAAAAGTTACTGAGTTTTTTTTT
CTGATTTAGATGAAAAGGACAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032174XLOC_032174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050793-exon-scaffold_188-1575043694:12971..13018TCONS_00050793-exon-scaffold_188-1575043694:12971..13018Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1575043694:12570..12626TCONS_00050793-exon-scaffold_188-1575043694:12570..12626Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1575043694:12420..12461TCONS_00050793-exon-scaffold_188-1575043694:12420..12461Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1575043694:12253..12288TCONS_00050793-exon-scaffold_188-1575043694:12253..12288Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1575043694:11965..12000TCONS_00050793-exon-scaffold_188-1575043694:11965..12000Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1575043694:11844..11859TCONS_00050793-exon-scaffold_188-1575043694:11844..11859Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:12971..13018TCONS_00050793-exon-scaffold_188-1510915933:12971..13018Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:12570..12626TCONS_00050793-exon-scaffold_188-1510915933:12570..12626Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:12420..12461TCONS_00050793-exon-scaffold_188-1510915933:12420..12461Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:12253..12288TCONS_00050793-exon-scaffold_188-1510915933:12253..12288Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:11965..12000TCONS_00050793-exon-scaffold_188-1510915933:11965..12000Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1510915933:11844..11859TCONS_00050793-exon-scaffold_188-1510915933:11844..11859Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:12971..13018TCONS_00050793-exon-scaffold_188-1491911889:12971..13018Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:12570..12626TCONS_00050793-exon-scaffold_188-1491911889:12570..12626Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:12420..12461TCONS_00050793-exon-scaffold_188-1491911889:12420..12461Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:12253..12288TCONS_00050793-exon-scaffold_188-1491911889:12253..12288Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:11965..12000TCONS_00050793-exon-scaffold_188-1491911889:11965..12000Clytia hemisphaericaexon
TCONS_00050793-exon-scaffold_188-1491911889:11844..11859TCONS_00050793-exon-scaffold_188-1491911889:11844..11859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_188supercontigscaffold_188:11844..13018 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.821464	2.03503	1.97525	0.649226	1.29665	3.36645	3.87475	2.37612	2.19539	3.00027	1.03626	3.25311	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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