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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050796 ID=TCONS_00050796|Name=TCONS_00050796|organism=Clytia hemisphaerica|type=transcript|length=661bp
GGGATATCAATGAAATTacattcaaaaccaaaaatgtATTTGCTGATGAA
GACCGTTATATCTATTTTTTTGCTGATCCACCACATCTCATGAAAACAAG
TCGAAATTGTCTGTGGAAGTCTGGATCAGCTTCATCTTCAAGATATATGT
GGAATGACGGTAAATATCTCCTTTGGCAACACATTGTCGACCTTTACAAC
GAGGATATGGAATATGGATTAAAACTACTCCCCAAGTTAACCACTGACCA
TGTGCTTCTAAATTCCTACTCTGTCATGAGAGTTTATTTGGCTACTCAAA
TCCTTAGTGAATCAGTTGCAACTACGTTGAAAGAGTTTGGCCCAGAAACT
GCGTCTGGAACCAGCGAGTTTTGTCTAATGATGGACAAATTCTTTGACTG
CCTTAATGTTCGGAACCCAGATGAATGGAAATCAAAGGGTAAAAAATACC
TGAAGCCTTATAAGAGTGTTAACGATGAAAGATTAAAAGAAAACGATAAC
GGAGAAAAAGCGTTTTTGGATCTATTCCTTTCCTACTTGGATAAATGGAA
GAAAAGTATCGACAAGAGAAAAGGAGAATTTGCCACAACGGATAGAAATA
ACATGTTCCTGTCACAGCAGACCTATGCAGGACTGCAGATGACTGTTCAC
tctttaaaaga Run BLAST on NCBI protein sequence of TCONS_00050796-protein >TCONS_00050796-protein ID=TCONS_00050796-protein|Name=TCONS_00050796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
DINEITFKTKNVFADEDRYIYFFADPPHLMKTSRNCLWKSGSASSSRYMW
NDGKYLLWQHIVDLYNEDMEYGLKLLPKLTTDHVLLNSYSVMRVYLATQI
LSESVATTLKEFGPETASGTSEFCLMMDKFFDCLNVRNPDEWKSKGKKYL
KPYKSVNDERLKENDNGEKAFLDLFLSYLDKWKKSIDKRKGEFATTDRNN
MFLSQQTYAGLQMTVHSLK Run BLAST on NCBI transcript from alignment at scaffold_189:40686..41607+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050796 ID=TCONS_00050796|Name=TCONS_00050796|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at scaffold_189:40686..41607+ (Clytia hemisphaerica)
GGGATATCAATGAAATTacattcaaaaccaaaaatgtATTTGCTGATGAA
GACCGTTATATCTATTTTTTTGCTGATCCACCACATCTCATGAAAACAAG
TCGAAATTGTCTGTGGAAGTCTGGATCAGCTTCATCTTCAAGATATATGT
GGAATGACGGTATGTTTTTCTATCAGACATGCAGTTTTAGCTTAGCGTCT
AATATGTCAGGTTATCGACCCCTCTGAAAATCACCAAAATCATGTTTAAA
ACAATAGACAAAGTGTCCTTTCTTTGCCAAAATAAATTGCATTTTGTTAA
TGCTCTGTTTAACTTTTACTTTAAAGCTACCTTTTCTGctcttttttaga
atctttcTTAAATTCatgttcaaaaaatttcaaaattttaacttcTGAAA
TTGCTCTTCTGTTTCTTCAGGTAAATATCTCCTTTGGCAACACATTGTCG
ACCTTTACAACGAGGATATGGAATATGGATTAAAACTACTCCCCAAGTTA
ACCACTGACCATGTGCTTCTAAATTCCTACTCTGTCATGAGAGTTTATTT
GGCTACTCAAATCCTTAGTGAATCAGTTGCAACTACGTTGAAAGAGTTTG
GCCCAGAAACTGCGTCTGGAACCAGCGAGTTTTGTCTAATGATGGACAAA
TTCTTTGACTGCCTTAATGTTCGGAACCCAGATGAATGGAAATCAAAGGG
TAAAAAATACCTGAAGCCTTATAAGAGTGTTAACGATGAAAGATTAAAAG
AAAACGATAACGGAGAAAAAGCGTTTTTGGATCTATTCCTTTCCTACTTG
GATAAATGGAAGAAAAGTATCGACAAGAGAAAAGGAGAATTTGCCACAAC
GGATAGAAATAACATGTTCCTGTCACAGCAGACCTATGCAGGACTGCAGA
TGACTGTTCACtctttaaaaga Coding sequence (CDS) from alignment at scaffold_189:40686..41607+ >TCONS_00050796 ID=TCONS_00050796|Name=TCONS_00050796|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_189:40686..41607+ (Clytia hemisphaerica)
GATATCAATGAAATTacattcaaaaccaaaaatgtATTTGCTGATGAAGA
CCGTTATATCTATTTTTTTGCTGATCCACCACATCTCATGAAAACAAGTC
GAAATTGTCTGTGGAAGTCTGGATCAGCTTCATCTTCAAGATATATGTGG
AATGACGGTAAATATCTCCTTTGGCAACACATTGTCGACCTTTACAACGA
GGATATGGAATATGGATTAAAACTACTCCCCAAGTTAACCACTGACCATG
TGCTTCTAAATTCCTACTCTGTCATGAGAGTTTATTTGGCTACTCAAATC
CTTAGTGAATCAGTTGCAACTACGTTGAAAGAGTTTGGCCCAGAAACTGC
GTCTGGAACCAGCGAGTTTTGTCTAATGATGGACAAATTCTTTGACTGCC
TTAATGTTCGGAACCCAGATGAATGGAAATCAAAGGGTAAAAAATACCTG
AAGCCTTATAAGAGTGTTAACGATGAAAGATTAAAAGAAAACGATAACGG
AGAAAAAGCGTTTTTGGATCTATTCCTTTCCTACTTGGATAAATGGAAGA
AAAGTATCGACAAGAGAAAAGGAGAATTTGCCACAACGGATAGAAATAAC
ATGTTCCTGTCACAGCAGACCTATGCAGGACTGCAGATGACTGTTCACtc
tttaaaaGATATCAATGAAATTacattcaaaaccaaaaatgtATTTGCTG
ATGAAGACCGTTATATCTATTTTTTTGCTGATCCACCACATCTCATGAAA
ACAAGTCGAAATTGTCTGTGGAAGTCTGGATCAGCTTCATCTTCAAGATA
TATGTGGAATGACGGTAAATATCTCCTTTGGCAACACATTGTCGACCTTT
ACAACGAGGATATGGAATATGGATTAAAACTACTCCCCAAGTTAACCACT
GACCATGTGCTTCTAAATTCCTACTCTGTCATGAGAGTTTATTTGGCTAC
TCAAATCCTTAGTGAATCAGTTGCAACTACGTTGAAAGAGTTTGGCCCAG
AAACTGCGTCTGGAACCAGCGAGTTTTGTCTAATGATGGACAAATTCTTT
GACTGCCTTAATGTTCGGAACCCAGATGAATGGAAATCAAAGGGTAAAAA
ATACCTGAAGCCTTATAAGAGTGTTAACGATGAAAGATTAAAAGAAAACG
ATAACGGAGAAAAAGCGTTTTTGGATCTATTCCTTTCCTACTTGGATAAA
TGGAAGAAAAGTATCGACAAGAGAAAAGGAGAATTTGCCACAACGGATAG
AAATAACATGTTCCTGTCACAGCAGACCTATGCAGGACTGCAGATGACTG
TTCACtctttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050796-exon-scaffold_189-1491911889:40686..40844 | TCONS_00050796-exon-scaffold_189-1491911889:40686..40844 | Clytia hemisphaerica | exon |
| TCONS_00050796-exon-scaffold_189-1510915933:40686..40844 | TCONS_00050796-exon-scaffold_189-1510915933:40686..40844 | Clytia hemisphaerica | exon |
| TCONS_00050796-exon-scaffold_189-1575043694:40686..40844 | TCONS_00050796-exon-scaffold_189-1575043694:40686..40844 | Clytia hemisphaerica | exon |
| TCONS_00050796-exon-scaffold_189-1491911889:41106..41607 | TCONS_00050796-exon-scaffold_189-1491911889:41106..41607 | Clytia hemisphaerica | exon |
| TCONS_00050796-exon-scaffold_189-1510915933:41106..41607 | TCONS_00050796-exon-scaffold_189-1510915933:41106..41607 | Clytia hemisphaerica | exon |
| TCONS_00050796-exon-scaffold_189-1575043694:41106..41607 | TCONS_00050796-exon-scaffold_189-1575043694:41106..41607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:40686..41607 + |
Blast
The following BLAST results are available for this feature:
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