TCONS_00050803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050803
Unique NameTCONS_00050803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050803 ID=TCONS_00050803|Name=TCONS_00050803|organism=Clytia hemisphaerica|type=transcript|length=158bp
AATACCCATGAGAAGTATGCACAAGTAGTGCTCAGTCCCTTACTGTGATG
ACCAATGGGAAAGCCAGTTGTAATCGTCGTTAATATGGCCAGTGTGACCA
AGTACCTTAATGTTTGAGTGGTTGTCATAGCGtgGGTTTCCATTGACTCG
TCAACCAA
Run BLAST on NCBI

transcript from alignment at scaffold_189:158757..165462+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050803 ID=TCONS_00050803|Name=TCONS_00050803|organism=Clytia hemisphaerica|type=transcript|length=6706bp|location=Sequence derived from alignment at scaffold_189:158757..165462+ (Clytia hemisphaerica)
AATACCCATGAGAAGTATGCACAAGTAGTGCTCAGTCCCTTACTGTGATG
ACCAATGGGAAAGCCAGTTGTAATCGTCGTTAATATGGCCAGTGTGACCA
AGTACCTTAATGTTTGAGTGGTTGTCATAGCGtggtttgtattttattct
tCTATGATTGAAATGATATTATAAGTTGGTTTGGATATCGGTATTTTAAA
TCgaaatttccgccattatgaaagcaagcgttcgatttgcgtaagggatc
GCCTTAATAGattcaaaaatttccttccataatggtggaaattgaCGCTC
TCTAAGTCGACATTCTCCATCCCATGCTCAGCCCCTTCAACGTGCAtatc
caattttttacaaagataTTTCTAATAATATACTTTAGTACATAGGGCAT
AGCATGTAATTGAGCCATTCAATGACGTCATGCCGAGATGCTGACACCAT
TAATGACTGATATATTATTATAAAGGAACAGTTTACCTCCATTTAAGAGT
AAAGTGGTAGTTAGATTAACCTTTCCAACgtgcaagattttttaaaaatt
gtgaaaacTTTCAAGAATTGATTTTAATCACAAAAGATACATATTTTata
gattttgaagattttaataGAATCTAAATACTAAAATGCGGATATATATT
GTATACATCATAGGATTGcatgaaataattttcaagtgaTATTCTTAATT
CTTGAATTATATTTAatagaaacaatagaaagaaatcTTAACATGTTTCT
TATAATcatgattttatttcaaatctttATATAGTGCCTTTTTATAGTGG
CATTCCTCACAATTTATTTTCAGAATGATTCAATACGCCATCAATATAGA
ATGGGATATATAATCCGCTTTTNATAGTGGCATTCCTCACAATTTATTTT
CAGAATGATTCAATACGCCATCAATATAGAATGGGATATAATCCGCTTTT
TTACAGAAAAGCTTTAAATAATACTCTGTAACATTAAATCCTAACAACGA
ATTATAAATATATATTGAGCCGTTGATCCTACTCTTGCCTATTCTCGGCT
TGGCAATGTCAATGAGTTggtatatttttagaaaagctTTTGAATGAGGA
ATTTACAAAGCAGTTTCCGTATTTAGTAGTACATACTTTAAGTCTTATTG
CCGAAGTGCATGACAACCGTATAAGCTCTAAAGGATAGGAAAAGAATCTT
TCCAATCATTCCCAGTTAAAAATTAGCTAAGAAATTTCCTACTTTGTGTC
AAATATTATGGCTATTGTTGTACATTGTTGTCTTTTCTAGAAAAGGGAAT
CGATGTTAGCTCCAAATTTGGAACCCCTGTATGTAACACAACCTCAGTTT
TTGAATTACACTGTATTATCAGTGTCTTTTGTCTTTTGTGGAATATCatc
ttatattttattgttaacaAAATTTCTGAATAACTGCATACCAAGAGCAA
AGCTGGCAAATCTTAGTGAATATAACATTTTGTAGCCATACgtgtaaaag
ttaatctaaagTAATGTAAGATGACTACTTTGGTTTACATTAATTCTGAT
CTAACGATCCTATTATGATTGAGTCCTGCCCCCTTCCCTCATTCAACGTC
ActcataaaagaaaaagaatggaCCCTCGCCAAGTTGAATTTCTAATATT
CAAAGTTTTCTAGGTagataccgggtgacccacgaaaaagttcggaagtt
tctcggcgtcttgaggccgaacaaatgtcccaaagtgcttggagttttNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtctactttttaaataccaaaattccgagcacttt
gggacatttgttcggcctcaagacgccgagaaaggtccgaactttttcgt
gggtcacccggtatatcgTTTGAACTTGTTCGCAGTCCCCACAAgtctct
taaaatactttcattAATTAATACGAATCGTActgtaattcgaacaattt
AGATATTCCCCAGAGCTCAAATTATTGAGAGTCAAAGGGTTTCTATTACA
ACGATTAGGTACCAAGTCTACTCCCATAGCAATCAGTGGTAGGGCAAAGG
TACACCCACTTAACTGCTATTAAATCATAGCACCGAATGGAAATCGAACC
TTACTCCaaggtcccgaatagacgtccccacccgcttactttaatgggat
aaactttcgcgggggttaaatttcgcggttgggcctatacgcgaaattca
aaaatttcgcggggacttaattttgcggatggcactattaggtggcaata
ttttcacgattttgtgacttttactgtcaaatcatgcatgttggttgttg
aaatacacattgtttgcgcctctttgatgcaagtaacaaTTCAAATAgga
tttatttgacatattttgagttttgtttagaaatatttcgcccttacaaa
tttccattgggatttaatttcgcggattttcgcagatgacacccaaatcG
GCGAAATCCGTGAAATGtaatccccgcaaaagtttatcccattaaagtat
taattttcaaaatttttcggaccccccccccccccgttcttatttggacc
ccctccccccgtttatttattttccattttttttgttttcgagtTGAAGT
GCTTAATTTCGAACGACGTTAGAGTACTGCAAACCAGGTCAAATACGTTT
CAAATGATGATGATTTTCAGCCCCCCCCTTGTTTAAATTCAGACCCTCCC
TTctattatattttgcaaaaatttcggaacccccccccttttattcagac
cccctATTATTCGGAACCTTAGAGTACCTTCCTGATAAACCACTTCACTT
ACTACACTACTGCTCTAATTACTAGCATTTGATCAtccaaataatatttt
caaactaaatGTGTGTCTATAACCCTAAATTTTCCATTTAGTTTATTCCA
GGAAGCCTCAACTGAACCCAGTGACGTAATGATACCTTTTTATCAATTTG
ACGTCAttatgtttttttcaatttatttctaGAGAGAGGAAAATATCCCA
CGCCTAAATGAGGCACATCCAGTCAcgctaaatttctttttgtcaaaaat
atgGTATTgtctattttgattttttgatgccTAGACGTAattcttttcaa
acttttatctGTCGCAGCTCCTTCCACGAAGACCCAGTTCAAATCGAAac
taaacatatcaaaacattaTCCCCACAACAAGTACAAGTCCATACCTTTG
TAGCCAACCTACTTTGTTTCCTCAAAAAGACCAAAAACCCCGGTCAAAAT
TCCATTAAACAGCTCAGCACCATACCAAACTCAGGTCCTCCCATATTGTT
ACTGCCTTaataaagaaaacaatagaaCCAACATATAAACTCATTCTTCt
ttaaaagttgataaaatatcccTAAAACAGTTCTTTATCTTTTAGGGGCC
CTTCCTTTTTGGACTAGAACtttaaaattaggaaatttcCTCTTTGAATA
AATTTCGGGGGTGTATTATGTATTCTAGGTGATATATCAAATTTAGTTTG
TCCCTTAAGCGAAATAACAGAACCAATAAACCTTAATAATAGTCTATACT
CTAAACCCGTTCTTTTTGGTCTCATAAGACTAAAAGAGGTTTATTAGGTC
TTGTTCTTTTGCTGAATTTCAGGGTTTTGCATATTCAATATGTTTCCCCT
TTTCAAAGCAGTTTTCCCAATAAAGTCCTTGGATGATGTTAATGGACGAA
ATCATGAAGGAAATTTGCATGTAGTATATAAAAAGGCAAAGAGATACGAA
AAACTAAGCAAACCTGAGAAAGAGTGAGAAAGAGTGAAATAAAAGTGAAA
TAAGTGAAAAAGTGATTGTATTGACCTTAACATAAACTCTTAGCCCCAAA
AGGAATGGGCCGAGTATTTAATTCTGATCTAGGGTAGTCTGTccaataag
aacatccaacaagAACACATTTGCAAAACTAGTTTAAAACTTTCTGGTTA
TATATGGTTGTTTATTGTCTTTCCAATTAGTGAAATTCCATGAATCCGCA
ACTGTGATTAGAATAAATGGCGATATTGCAAACATCAGTTGATCAGTAAA
AACTACTAGTAGCACACAGtagccgtccacatagtacgtacgcactaaaa
tttCGACAATCGAATATCCCTCCCCCATGTACGCAAGGGTACGTAAATGG
CTATTCCCCCCtgtggtaagtacgtactttttcattNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCTTTTTtggaaaccccccccccccc
ttagtgcgtacgcaCATCCAAACCAAACATCCCATACCacctgattatcc
ctttaaatttCTAAAGGCTTATCTAAAATCAATCAACACTCAATGTTTTA
AAGTTCCACACTGTTGTACTAGATAGCAATTAAAAAGTTAATGATTAGCT
AACCCTAATGCTATggcaaacatttcaaaatacgaggtagagaaaaaaat
gtttgaaataaatGGTGACTTAATTAGCATTATTCTAGAAGACTTTGAAG
TtaataaaagttttgattttttgtataataTAGTAAAGCAAAAGGTCACA
TGCCAGGACTTGATCTGTTATGAGTTATATTCATTGATTAGACgtttata
aattttcatttgtcaTAATAGGTTAAAGGTAGGATGTCCACAGGGAACAG
TAGTTCTAAAGAATCGATAAGTCTCTAACTCGGGATTTTtagtagactag
agtctacttctgactgaactttgctttttgataatttttgagtCCAATAA
AGTACTTAATAGCGCCAACCAGTCTATAAAAGTTTTAAATGGACCCCTGG
CTAGATTGTTCGTAAACCACTATTCATGAATGGCGAATTAACCGTTATGA
AAGGTTGAAAATTAGcatcaaagaaaaatcaaaaaaaatcacagtCGCCT
TTTCGGTGAATACGGCAGAAGCTGCAATCTTTCAATACACagctatttta
taagaatattcaaaatgttcttaactttttgagctttaagcctggaaatg
ttctgaacttgttcttaatattttgaccatcgaagccttatgttcttata
taatttgttcttataaaaaagaaaaaatatggaACGAGTATTCTATCTAT
CTGGAAACCCCCCTCGGAAGGTTTGGAACCTGCCATTTGTTGTTCCTAGT
ATCTGTGTGAATGTTTTTGTGTTATATCTATTAGGGAACCCTTGGAACCT
TTGTAACCTGCCATTTGTCCCTTTATGTGTAAATGTATTTGTATTTTATC
TATGGGAACCCTCGGATCCTTTGGATCCACCTCTGGAAAGCAACTTCGTC
TTATGACTCAAAATTCAATTGCTTGTTTTAAGGGTTTCCATTGACTCGTC
AACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032184XLOC_032184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050803-exon-scaffold_189-1491911889:158757..158890TCONS_00050803-exon-scaffold_189-1491911889:158757..158890Clytia hemisphaericaexon
TCONS_00050803-exon-scaffold_189-1510915933:158757..158890TCONS_00050803-exon-scaffold_189-1510915933:158757..158890Clytia hemisphaericaexon
TCONS_00050803-exon-scaffold_189-1575043694:158757..158890TCONS_00050803-exon-scaffold_189-1575043694:158757..158890Clytia hemisphaericaexon
TCONS_00050803-exon-scaffold_189-1491911889:165439..165462TCONS_00050803-exon-scaffold_189-1491911889:165439..165462Clytia hemisphaericaexon
TCONS_00050803-exon-scaffold_189-1510915933:165439..165462TCONS_00050803-exon-scaffold_189-1510915933:165439..165462Clytia hemisphaericaexon
TCONS_00050803-exon-scaffold_189-1575043694:165439..165462TCONS_00050803-exon-scaffold_189-1575043694:165439..165462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:158757..165462 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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