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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050805 ID=TCONS_00050805|Name=TCONS_00050805|organism=Clytia hemisphaerica|type=transcript|length=1275bp
TCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGGAAGACAAAGG
AAGATTATAGCAATTCGGAATATTCAACATATGGAGATGATCGAAGCAGA
TCTGAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCGTTGAGAAAAG
AGGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCTGATAGCATTC
TCAAGACATTACGAAAAGAAAGCGATATCGACCGCCGCGGTAACGAAATT
CGACCGCGCAACAAAACTGAAAATAGTTTCTTAAGCACTGATCTGTCATC
AGGTAACCAAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAA
CATGTGATTGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCG
GCCTCTATAGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCA
TCGGCGCCGAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaag
gaaagaAGTCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaata
atagaagtcaatttacagaaaatgaagaagatttCACAGACGAGTACAGA
GTCTTTTTCTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGA
GGTCTGGGAATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACA
GAAACTAAGGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGG
GATAGATAATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCAC
CTCTACAAGTAACTTAAGATTGTGTTCGTTTGGAAAAGGATGTTTAGAGG
TTCCAATTAAAAAAAAGCAATGAAGGCGTTAACGTCTCGAACAACAGGTT
TGACTATGGTTCAAATCATCGCTTATTATAATGTGTTCCGTGCAGGTCAT
AAATAGACAAGCCGTCTGGTCTTGGACCCCGTTTAAAGGTTTAAATTTAA
GAGAGCGATGTCCAAGGCGTCAGCTCCTCAATCAAGGGGTTTGACTATTG
TTCGAATTCTTGCTCCCACTTATATGTTCCGTGCAGTTTATGAATAGCCA
AGCccgctggccgtggaccccttGAAAAATCCTCGATTCCTCGGGTATCC
ACGTAAATAATTGAATGACTCTATCTATTTATTCTAAGTATCCCCGGACT
CTATGCGCCACGGATATGAATTCAGGGGTATATAACAATATGCGGAGTCT
CACTTTGGAGTATGTGGTTACACNN Run BLAST on NCBI protein sequence of TCONS_00050805-protein >TCONS_00050805-protein ID=TCONS_00050805-protein|Name=TCONS_00050805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
LYHLLFPYDREKGKTKEDYSNSEYSTYGDDRSRSESMFEVARKIYIVEKR
GSIDHNLNVGTPPDSILKTLRKESDIDRRGNEIRPRNKTENSFLSTDLSS
GNQGTQTEDERPKRKETCDCATYTEHDIPTLVAASIGQLKDRNDSKKAYH
RRRKTWNWFESSKKSKGKKSYDIEQKSKEKNEIIEVNLQKMKKISQTSTE
SFSNPIHDEIKAETKSRSGNSNQITIHTQTASTETKDFDMDLDRDILECG
IDNEAYSRSESVNLPSPLQVT Run BLAST on NCBI transcript from alignment at scaffold_189:214582..217738+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050805 ID=TCONS_00050805|Name=TCONS_00050805|organism=Clytia hemisphaerica|type=transcript|length=3157bp|location=Sequence derived from alignment at scaffold_189:214582..217738+ (Clytia hemisphaerica)
TCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGGAAGACAAAGG
AAGATTATAGCAATTCGGAATATTCAACATATGGAGATGATCGAAGCAGA
TCTGAGGTACAACATCTTTTAGAATAACACCATGAGAATACCAAAGCTCA
AAATGCTCAAaactaagaacaatttaagacaaCCCTTAGCCTGGAATTAA
TGAAATTAGTGTCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtcg
tttttcattatttttactcaattttattttgttagaatttggtccaaaaa
tgctcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAATTAATGA
AATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtcgttt
ttcattatttttactcaattttattttgttagaatttggtccaaaaatgc
tcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAATTAATGAAAT
TAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtcgtttttc
attatttttactcaattttattttgttagaatttggtccaaaaatgctca
aaactaagaacaatttaagacaGCCCTTAGCCTGGAATTAATGAAATTAG
TATCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtcgtttttcatt
atttttactcaattttattttgttagaATTTGGTCCAAGCTATTCCTCAT
TTGAGGCTtgaagtacacgcttttttacgAGAATATTTATAATGAAATTG
TAATTGGCCaaagaattaagaatatggtaaagaatgtcatttttatagca
ttttaccattaaattgccaattatgccCCAACAATGCTAAAAGGTTCCAC
AAAAATGGCAAATATTTGCTAGAGTTATGCATTGAAAAACacttataata
taaaataagcGTGTGTATCAAGTTTGAAGAAATGccttactttttacttt
attGTCCAATAGCGGATGCTAATAGACTAGAGTGTTAACGAAATCTACCT
ACCTAAATAACTTCTACCTTTTTAACAATTGAAAGCTGTAAATCTATGAT
TTTAtaaaattcagatttttaaatttacatttgcatttttttgtaCAGAG
CATGTTCGAAGTGGCACGAAAAATTTACATCGTTGAGAAAAGAGGTTCGA
TCGATCACAACCTCAATGTTGGTACACCTCCTGGTAAGTGTTTAATCTTT
TACTTTAATGGGTAGaactttcgcgaggattaaatttcgcggattacGCG
GATTttggtgtcatccgcgaaattaagtcccaatgaaatttggaagggtc
tcatccgcaaaatatttctaaacaaaactcaaaatatgtcaaataaatac
tatttggaatggttacttgcatcaaagaggtgcaaataatgtgtatttca
acaaccaacatgcatgatttgacagtaaaagtcacaaaatcgtgaaaata
ttaccacccaatacacgtttttttttttataagaacgtcaaaagttttcg
aagccttcggatgttcttagttttttggatttgaagcttaaattcttaaa
atgttcttattttaagcattttttgagcattttgatgtaatttcttaaga
aaatgcatgtttttaagtctccaaagccttagaatgttcttagaatgttc
ttaaatttttgggcctcgaagccttatgttcttatatagtttgttcttat
aaacaaaaaaacgtgtagtgcaacccgcgaaattaagtccccaaaatttt
tgaatttcgcggataggctcAACTGCaaaatataatccccgcgaaggttt
atcccattaaagtaagaAATTATATcgcactttcgctttccataTTTTTG
CCTGTTCTGGTTTTCGCACATTTTCGAGTACAATCGAAGATTAATTACGA
GTAACATCAAGAAGTCTATTAATTTGTATTAAAGAGGTGTCTTTCCATCA
TACAACCAGTACCATTTTTACCATGAACGTTCTGCGTCTCCCCCATAAAT
GCTGATAATCTTCGTTTTTCTAGATAGCATTCTCAAGACATTACGAAAAG
AAAGCGATATCGACCGCCGCGGTAACGAAATTCGACCGCGCAACAAAACT
GAAAATAGTTTCTTAAGCACTGATCTGTCATCAGGTAACCAAGGAACACA
AACCGAGGACGAACGACCGAAACGAAAAGAAACATGTGATTGTGCTACGT
ATACCGAACACGATATCCCAACCCTAGTTGCGGCCTCTATAGGCCAACTC
AAGGACCGTAACGACTCCAAAAAAGCGTATCATCGGCGCCGAAAGACATG
GAATTGGTTTGAATcgtcaaagaaatcaaaaggaaagaAGTCGTATGATA
TTGAACAAAAAtctaaagagaaaaatgaaataatagaagtcaatttacag
aaaatgaagaagatttCACAGACGAGTACAGAGTCTTTTTCTAACCCTAT
ACATGATGAAATAAAGGCTGAAACGAAATCGAGGTCTGGGAATAGTAACC
AAATCACGATACATACTCAAACTGCTAGTACAGAAACTAAGGATTTTGAT
ATGGATCTGGATCGTGATATCTTGGAATGCGGGATAGATAATGAGGCGTA
TAGTCGATCAGAATCCGTGAATCTACCTTCACCTCTACAAGTAACTTAAG
ATTGTGTTCGTTTGGAAAAGGATGTTTAGAGGTTCCAATTAAAAAAAAGC
AATGAAGGCGTTAACGTCTCGAACAACAGGTTTGACTATGGTTCAAATCA
TCGCTTATTATAATGTGTTCCGTGCAGGTCATAAATAGACAAGCCGTCTG
GTCTTGGACCCCGTTTAAAGGTTTAAATTTAAGAGAGCGATGTCCAAGGC
GTCAGCTCCTCAATCAAGGGGTTTGACTATTGTTCGAATTCTTGCTCCCA
CTTATATGTTCCGTGCAGTTTATGAATAGCCAAGCccgctggccgtggac
cccttGAAAAATCCTCGATTCCTCGGGTATCCACGTAAATAATTGAATGA
CTCTATCTATTTATTCTAAGTATCCCCGGACTCTATGCGCCACGGATATG
AATTCAGGGGTATATAACAATATGCGGAGTCTCACTTTGGAGTATGTGGT
TACACNN Coding sequence (CDS) from alignment at scaffold_189:214582..217738+ >TCONS_00050805 ID=TCONS_00050805|Name=TCONS_00050805|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_189:214582..217738+ (Clytia hemisphaerica)
CTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGGAAGACAAAGGA
AGATTATAGCAATTCGGAATATTCAACATATGGAGATGATCGAAGCAGAT
CTGAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCGTTGAGAAAAGA
GGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCTGATAGCATTCT
CAAGACATTACGAAAAGAAAGCGATATCGACCGCCGCGGTAACGAAATTC
GACCGCGCAACAAAACTGAAAATAGTTTCTTAAGCACTGATCTGTCATCA
GGTAACCAAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAAC
ATGTGATTGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCGG
CCTCTATAGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCAT
CGGCGCCGAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaagg
aaagaAGTCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaataa
tagaagtcaatttacagaaaatgaagaagatttCACAGACGAGTACAGAG
TCTTTTTCTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGAG
GTCTGGGAATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACAG
AAACTAAGGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGGG
ATAGATAATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCACC
TCTACAAGTAACTTAACTATATCATCTCCTATTTCCTTATGATAGGGAGA
AAGGGAAGACAAAGGAAGATTATAGCAATTCGGAATATTCAACATATGGA
GATGATCGAAGCAGATCTGAGAGCATGTTCGAAGTGGCACGAAAAATTTA
CATCGTTGAGAAAAGAGGTTCGATCGATCACAACCTCAATGTTGGTACAC
CTCCTGATAGCATTCTCAAGACATTACGAAAAGAAAGCGATATCGACCGC
CGCGGTAACGAAATTCGACCGCGCAACAAAACTGAAAATAGTTTCTTAAG
CACTGATCTGTCATCAGGTAACCAAGGAACACAAACCGAGGACGAACGAC
CGAAACGAAAAGAAACATGTGATTGTGCTACGTATACCGAACACGATATC
CCAACCCTAGTTGCGGCCTCTATAGGCCAACTCAAGGACCGTAACGACTC
CAAAAAAGCGTATCATCGGCGCCGAAAGACATGGAATTGGTTTGAATcgt
caaagaaatcaaaaggaaagaAGTCGTATGATATTGAACAAAAAtctaaa
gagaaaaatgaaataatagaagtcaatttacagaaaatgaagaagatttC
ACAGACGAGTACAGAGTCTTTTTCTAACCCTATACATGATGAAATAAAGG
CTGAAACGAAATCGAGGTCTGGGAATAGTAACCAAATCACGATACATACT
CAAACTGCTAGTACAGAAACTAAGGATTTTGATATGGATCTGGATCGTGA
TATCTTGGAATGCGGGATAGATAATGAGGCGTATAGTCGATCAGAATCCG
TGAATCTACCTTCACCTCTACAAGTAACTTAACTATATCATCTCCTATTT
CCTTATGATAGGGAGAAAGGGAAGACAAAGGAAGATTATAGCAATTCGGA
ATATTCAACATATGGAGATGATCGAAGCAGATCTGAGAGCATGTTCGAAG
TGGCACGAAAAATTTACATCGTTGAGAAAAGAGGTTCGATCGATCACAAC
CTCAATGTTGGTACACCTCCTGATAGCATTCTCAAGACATTACGAAAAGA
AAGCGATATCGACCGCCGCGGTAACGAAATTCGACCGCGCAACAAAACTG
AAAATAGTTTCTTAAGCACTGATCTGTCATCAGGTAACCAAGGAACACAA
ACCGAGGACGAACGACCGAAACGAAAAGAAACATGTGATTGTGCTACGTA
TACCGAACACGATATCCCAACCCTAGTTGCGGCCTCTATAGGCCAACTCA
AGGACCGTAACGACTCCAAAAAAGCGTATCATCGGCGCCGAAAGACATGG
AATTGGTTTGAATcgtcaaagaaatcaaaaggaaagaAGTCGTATGATAT
TGAACAAAAAtctaaagagaaaaatgaaataatagaagtcaatttacaga
aaatgaagaagatttCACAGACGAGTACAGAGTCTTTTTCTAACCCTATA
CATGATGAAATAAAGGCTGAAACGAAATCGAGGTCTGGGAATAGTAACCA
AATCACGATACATACTCAAACTGCTAGTACAGAAACTAAGGATTTTGATA
TGGATCTGGATCGTGATATCTTGGAATGCGGGATAGATAATGAGGCGTAT
AGTCGATCAGAATCCGTGAATCTACCTTCACCTCTACAAGTAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050805-exon-scaffold_189-1491911889:214582..214687 | TCONS_00050805-exon-scaffold_189-1491911889:214582..214687 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1510915933:214582..214687 | TCONS_00050805-exon-scaffold_189-1510915933:214582..214687 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1575043694:214582..214687 | TCONS_00050805-exon-scaffold_189-1575043694:214582..214687 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1491911889:215730..215814 | TCONS_00050805-exon-scaffold_189-1491911889:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1510915933:215730..215814 | TCONS_00050805-exon-scaffold_189-1510915933:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1575043694:215730..215814 | TCONS_00050805-exon-scaffold_189-1575043694:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1491911889:216655..217738 | TCONS_00050805-exon-scaffold_189-1491911889:216655..217738 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1510915933:216655..217738 | TCONS_00050805-exon-scaffold_189-1510915933:216655..217738 | Clytia hemisphaerica | exon |
| TCONS_00050805-exon-scaffold_189-1575043694:216655..217738 | TCONS_00050805-exon-scaffold_189-1575043694:216655..217738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:214582..217738 + |
Blast
The following BLAST results are available for this feature:
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