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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050808 ID=TCONS_00050808|Name=TCONS_00050808|organism=Clytia hemisphaerica|type=transcript|length=1577bp
AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca
tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT
AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGAATGGTCGGCAACG
AAAATGGGATTACGTTAAAGTTCACGATTCGGTATCCATTTTGATTTACA
ACAAGACCAGAGATGCATTTGTGTTGGTAAGACAATTCAGACCAGCACCT
TATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacattga
aaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTGAGC
TTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTCCT
CTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAACGT
AGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGATATT
CAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATGttg
ataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatttgtc
aaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAAATA
GTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTTTGA
GCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataatcAAAT
ATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACCAATAAA
ATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGGAGCCTT
GTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCAAGTTGA
AAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATTCTACAT
GGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaaagtcaa
aaaaattttatataaactaaaatcctcataatttgtgccaaattttagTC
CACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCTTTGGGA
ATTTGgatatctattgattgaacagagaattattgtcttatttcaattat
tctatACCCAGTTTAGATgttgagttttgaggattttactgTGTATtaaa
atttgtccgcttttttttgggacacgctgtaaaattaattttagctATTC
TTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATAaacttt
tctcaattttttttcccaAAGAGATATTATATTATGAAGTTTATGTATTG
ACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTTTGATCT
TTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTTAAATCA
AGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTACTATGA
AAAAtctctattttattttatattttagtatttttcgCAGTAATCCTTTG
GTGGGTTATTGTATTTTATATTTGAAT Run BLAST on NCBI transcript from alignment at scaffold_189:247720..252652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050808 ID=TCONS_00050808|Name=TCONS_00050808|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at scaffold_189:247720..252652+ (Clytia hemisphaerica)
AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca
tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT
AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGGTAAAAATGACAAT
ACAGGATTTGTTTTGTTTCCCATAGTGGTTCATTTATGtctgtttttgta
tatttttggatgaaTGAGAtgggatttttaatttttaagtagAGTTATGA
TATTTTTCTGTTTAACTTGGCTTTTATCTTTACtcaatttttaaagtttt
ctttttttgtcttgAATCGGGATTCTTTCTCTATTTCTCCTCAAAACTTG
AAAGATACAAAGGAATGTGTATTGCATTGAAGTTTGGATTTGTATTGTTT
GCATTAActcaaaaatttttcttcactCTTTTCTCTTAGAATGGTCGGCA
ACGAAAATGGGATTACGTTAAAGTTCACGATTCGTAGGTTTCCTTTCTCT
TAAACatagtattcatgatatgcaccctTGCAATGTCTTCACACGTCGCA
TTGCGTAATATTACGTAATCTGTTCTTGCCGCCATGTTGGTTTGAATAAA
AAATCCGCGGCAAAATAATCAGGTGGCAAATTCAATGTGTTTTGTCTCCC
AAACCCTTAAAATACACCCAGACCCCTACCTCTCCTTTCTGGGAACTTGA
TATCTCAAAATTCAGATTTTACAAGTCACGTCAAATAACATGAAGATAGC
AGGTGCATCCGATATTTCTAAGATATTCTGCACAATGAAAAGAATAAGAA
GATTATGATGAATTCTATTGCTTTTTTACCTCAAATGATCGATCTGTGta
ccaaataaaaaaagaattcctTTAATCAAAGAACTCGACGGTTGTCCTGG
AATAATTAAATTATACTCTTATTTATTAGCACTTACTTTTTCATTATCAT
ATAATTTAGGGTATCCATTTTGATTTACAACAAGACCAGAGATGCATTTG
TGTTGGTAAGACAATTCAGACCAGGTAAAAGGATTAAGTTCACATAATTT
TTACTCTCCCGCAGTGTGATGATGGGTCTTTCCTTTgaatcaaacaaaaa
tatacAAACTGGCACCAATTTTGACCTGTTAATACAAACTTGTTGCCATT
ATTGTAGGTTTATGCTAACAAATCTAGCTCCTAAGAGGCCTTGTTAAcat
aaaaaggtcaaattaGAAAGATACTGTATACACTTCTTAATACTTGGAAC
GTTGAACCTTGCGTCAATTTCTTGGTGCGAGCATTGTGGGGCAACTTACT
GTCAACCGGATATGCCATTTTATCATAAAGAAAGCCGGTCATGATTAATA
ATAGATATAATAGATCTTTTTCACGCGCAATGCTTACCTCGTTTACtaaa
tattgctatggtaactAATTGAAGATTCGAAGAGGAGTTCGTGAGAAGTT
TACTCtataaacaaaattaacaatTGAAGACTTTCAGAgagtcgttgcac
tcaaaatattttatgaaacaaTTAGTTTTTATTACTTGTTTTCGTTCTTA
CGTTGATCATCAATCACGATAAAAACCTTCTTCGTGTTCTTGTAATTCCA
GCACCTTATCTGAACATCAATTCCAAAATGTTGAAAGAAGAAGTTTCAga
cattgaaaataaatcatctgaaaagaaagatttcaaaacagTTGCTCCCT
TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA
CGTTCTTTAGTTGAAATAGCACAAAGTGAAATTGAAGAAGAGACAGGTTA
TATTGTCCCTTTGGAAAACATCAAACAAATATTCAGACATACTGCGACAG
GACATTCAGGGAATATGGGTACTGCATTTTATGCTGAGGTGACAGATGAC
ATGAAAACAGCCAAAGGTGGTGGTGTCCAAGATTCTGGTGAATTCATTGA
TCTGTATTACCTACCAAGGACTGATGCTAAAGATTTTGCTCTTGATGAGA
GATATGTAAAGCCTTCAAGCTTCATTGCAGCCATAatgtggtttttcatc
aatcagcaaaaataaataaaaatgaaaaataatttttatttaagtttcat
tttcattttttttgtagtaTTTTGTAATCaatcagtttgaatgataaaaa
tcatttttatatttattgGACTGTTAGGGCTTTTCCTCATTTTATTTTCT
TCCTTAGAAATACAAtacaataaaatgaaaatgcttttgaTCTTTACCTG
TAATTTTTAATTAtagaataaacaaaacaaaacatggAAGAATTAAAAAT
CAGTGATATGCAACTGGCTCCTTTTGTTGACTCCGACGAATTACCAATCG
GACGCGTTGCTTTCAAACAGGTGAAACCAGTTAATAGTGGGTGTTCATTG
AAAAAGGGAAATTATATAAATGCAAATTCTGATAATTATGTCCTaacttt
tcaatttatttttcgaaaatccattATCATTACATTAAGAGTTGAATATC
TCTTGAACAAAGAGCTTCCATCtttatatttataatttttcgTTACTCCA
GTGagacaataaattttgagaattttaatcTGTTCCCACGTTATTCCAAA
AACAATCAATctcttattattattatttgacGAAAGTTTTCTTTTAGGTA
GATTTACATAGAATTCCCATTTCCGATCAAGATCTCCAAATTTTTATAAA
GCTGAtgaaaatcaatgttttttttctttcagaatgGATGCAAACGCCTT
TGGGATTACGTGGATTACAAAGATCAGTAAGCACTCGTGACAGCGTAttc
cacagatatcttatatgaaacaatagatagagctactctgtatttccctA
GCAACAACAGTTGAcgcaaaataatgcgccatcgTTGCTGAAAGTAGACc
acagttcggtaccggcaatttgcTCAAGCAAAATCATTGAATTCCAAAGT
CTATCGGCGCGAAAATGATTTAATGTCGACTTTTGCATATGATTTTGACG
AGATATTTAGCATCATTAGTTTAACATTCGTTCTTTTATCTTAGAATTCA
AGCTCTTGTCTACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAAT
TCAGACCTGGTATGAAAAATGTATTAAATTATAATCGGAAAGTGATGAGA
TTGAACAAGTTCCTTTCTTTCTCTCTCCCACTTTCAACGGAATTCGGCAT
TTTAGTTGCTGTACATCTTCTTATCCAATCTACAGGGTGTCCTTTTAAAA
AAGTACTTTGTCAGACCACTTCTTAGTTCTATAAGTAGAAGAATAATAAG
AAGTTTCTTCTAAATACAGATCACAATAATGCAACAATGAAGCACAAAAG
GTAGAGATTAACATTGTGATTACCGTAATAAAATAATTAACATTTCATTC
AATGAATgtcttttttaaaaaacaattaaagATCGAAGTAATTAAAAAGa
gtactttttatatttttgattgtGATACAAAcgcaaatattttttcaata
acgATTTTCAGGACACCCTGTAGTGTGAATCCATATCCTTGTACTTTGCG
AGTTTGGAGAAATACTCCAGGTAATTTTTTGTCTATTCCTTTTATTTACA
GCACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcaga
cattgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCT
TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA
CGTCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTA
TAACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTG
GATATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAA
ATGttgataaaagatttcaaaccTGATGCTGATCTcgttgaatattttta
tttgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGA
AAAATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATC
TTTTGAGCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataa
tcAAATATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACC
AATAAAATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGG
AGCCTTGTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCA
AGTTGAAAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATT
CTACATGGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaa
agtcaaaaaaattttatataaactaaaatcctcataatttgtgccaaatt
ttagTCCACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCT
TTGGGAATTTGgatatctattgattgaacagagaattattgtcttatttc
aattattctatACCCAGTTTAGATgttgagttttgaggattttactgTGT
ATtaaaatttgtccgcttttttttgggacacgctgtaaaattaattttag
ctATTCTTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATA
aacttttctcaattttttttcccaAAGAGATATTATATTATGAAGTTTAT
GTATTGACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTT
TGATCTTTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTT
AAATCAAGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTA
CTATGAAAAAtctctattttattttatattttagtatttttcgCAGTAAT
CCTTTGGTGGGTTATTGTATTTTATATTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050808-exon-scaffold_189-1491911889:247720..247855 | TCONS_00050808-exon-scaffold_189-1491911889:247720..247855 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1510915933:247720..247855 | TCONS_00050808-exon-scaffold_189-1510915933:247720..247855 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1575043694:247720..247855 | TCONS_00050808-exon-scaffold_189-1575043694:247720..247855 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1491911889:248159..248202 | TCONS_00050808-exon-scaffold_189-1491911889:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1510915933:248159..248202 | TCONS_00050808-exon-scaffold_189-1510915933:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1575043694:248159..248202 | TCONS_00050808-exon-scaffold_189-1575043694:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1491911889:248679..248743 | TCONS_00050808-exon-scaffold_189-1491911889:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1510915933:248679..248743 | TCONS_00050808-exon-scaffold_189-1510915933:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1575043694:248679..248743 | TCONS_00050808-exon-scaffold_189-1575043694:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1491911889:251321..252652 | TCONS_00050808-exon-scaffold_189-1491911889:251321..252652 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1510915933:251321..252652 | TCONS_00050808-exon-scaffold_189-1510915933:251321..252652 | Clytia hemisphaerica | exon |
| TCONS_00050808-exon-scaffold_189-1575043694:251321..252652 | TCONS_00050808-exon-scaffold_189-1575043694:251321..252652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:247720..252652 + |
Blast
BLAST of TCONS_00050808 vs. Swiss-Prot (Human)
Match: NUD14 (Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 7.954e-30 Identity = 66/207 (31.88%), Postives = 105/207 (50.72%), Query Frame = 2
Query: 89 CTQSKYVVPGRVTFNQNGRQRKWDYVKVHDSVSILIYNKTRDAFVLVRQFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFELGVTYELCAGIVDQKR-PLVEITKDAISQMMGYNVEEKQIKRIYQ-TNHVGYSGDRCDIYIVEVTDEMLI---KDFKPDADLVEYFYLSRNDAQEFATSDEYVKNSNVIASILWCFLHNI 694
C S Y+ P + + QNG Q+ WD++K HDSV++L++N +R + VLV+QFRPA Y + ++ ++ +E + P GVT ELCAG+VDQ L E+ + GY++ ++R+ + VG +G R ++ EVTD + +L+E +L AQ FA + K VI + W FL +
Sbjct: 12 CAASPYLRPLTLHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSW-FLSQV 215
The following BLAST results are available for this feature:
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