TCONS_00050811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050811
Unique NameTCONS_00050811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050811 ID=TCONS_00050811|Name=TCONS_00050811|organism=Clytia hemisphaerica|type=transcript|length=421bp
AGCTACTGAACCGTTAATGTGTAATTAAGGCATACTTTCACAATGTTCTT
TACAGCTTATCACTAGATCTACGTTATGCTGTATCTATTTGTAAAATGTT
TATAGGACGTTATAATAAAATATATGATTGGTGTTGAAATAAATATGTTA
TTTTCGTTTGAGGtacgaattagaaaataataTGTAAACCATGATGATCT
ACGCGTCTTTCAAAAACACACCGACCGGCATTAAAGTCTTTGTGAATTCA
ACGGCATCAAGTTTACCAACAATTTCATTCAAATTAACGTAACATTCGCC
ATAACATTTCGATTTATGATGTTTCAAACCTTTTTGTTTCCCATACATTT
GTATACAAATGGAAGTATTTAAAATCTCTACATTTGTGACCGGTCCCAAC
ATAAATGATGAAGCTAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_189:293794..298428+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050811 ID=TCONS_00050811|Name=TCONS_00050811|organism=Clytia hemisphaerica|type=transcript|length=4635bp|location=Sequence derived from alignment at scaffold_189:293794..298428+ (Clytia hemisphaerica)
AGCTACTGAACCGTTAATGTGTAATTAAGGCATACTTTCACAATGTTCTT
TACAGCTTATCACTAGATCTACGTTATGCTGTATCTATTTGTAAAATGTT
TATAGGACGTTATAATAAAATATATGATTGGTGTTGAAATAAATATGTTA
TTTTCGTTTGAGGtacgaattagaaaataataTGTAAACCATGATGATCT
ACGCGTCTTTCAAAAACACACCGACCGGCATTAAAGTCTTTGTGAATTCA
ACGGCATCAAGTTTACCAACAATTTCATTCAAATTAACGTAACATTCGCC
ATAACATTTCGATTTATGATGTTTCAAACCTTTTTGTTTCCCATACATTT
GTATACAAATGGAAGTATTTAAAATCTCTACATTCGAAACAGGTCCCAAC
ATAAAAGATAAAGCTAAAACAGATTCTTGGTTTTGGCCATCATGTAGTTT
TTTGCTCGCTGTCATAGCCTGTGATTTCACTTTAGATGTTGTCCATGCTT
TAAACTTTACCGATTGTAACACTTTCGGTAAATGATGCACATCAATTGAT
TTCACAACTCCttcaattttctcattttcttgaaaatatcttAAAGAAAC
CACAAGTGAAGTTTTAGAACCACCTTCAAAAACCTCTTCGGGGGAGATCT
CCTTATAAGGAGCAGTTGTAGTCTGTTGAGTCCCGGTCTGCACTTCTTCG
TTGTTGTTTTCTGACACGTTTACCTCATCATTtgcatcttctttttcttc
atcttcatcaacTTTTATGTAATCACCATTGATATATTTTGAAGCGATTC
GATTGATGATAAGTAGTAACAGCAATGAAAGTCCGATGAAACCAAAGAAA
ATGATCAAACCTGAATAGTAATATTAAACACAGCAGGATTTTTATAAGCG
AAACTTTTATTGGCATAAACCAGGCTTGAATTATATAGCTGTAAAACAAT
AGTAATGGAAATTAAAACATAAGATTATCCTTCTtcatacccctgtgtca
cagcgGGTtaccccatccccactggaaaattcggCAAAAATTTCGCCCCC
GGTTGGAAAAATAttctagaatttcagccccactgaaaaattgactttga
tttcatcccaattcaaaattgattGTTTAGAAATTGCGCTCCAAAACCAT
Tatccactggattttttaactttgaaacaataaaatttttatccccgctg
taggaaatggtttcaccggggctgagagacaggggtgtatttacaCACAA
AACATTTATTAGCATACATAAACCAGGCTTGGATTCTATAGCTGTCCCGG
GGGGAGGGCACTCATGTGGTCCAACCCATGGCATgtaccgcccttaaggg
taggttttacGAGACCcttgaaatgcactgtaagggcgtacttttgatag
agtgcactatTACAATGGTCCTCatttagctggatacactgtaagggtgt
ttTTGGGGACTAGTGAATTGCAAGACTGACAGTAAAAATCACTTATCTAA
AGCAATAAAATTCCGATGAAACCAAAGAAAATGATCAACTCTGAAAAGTA
ATAAACGCAACAGAGGATTTTAATTTATAAGCATTCACaacttttataag
cataaagaCCATAAACCAGGCATGAATTCTATAGCTGTAGAACAATAGTA
ATGGAAATTAAAGCATAAGGTTATACATATTGGTTTTAATCATCCTAAAG
TAAGATACGTGTACtgtaacacccccttctcacagatccagtagaatttt
ttcagggcagggataaaaataacggactgaaagtctattaggattgatat
tcccattttTTCATGGCTGAGAATtccaattattttgttttcaagccaga
aaattcagttggTATTGGAAAAATGGCATAATTTTTTACAGTTACAGTGA
TCTTATTATTTTCAgcagggacaaaaattagagtataattttccaccggg
acgatattttggcaaattttcccagtgggaaaggtttccagtgggtctgt
gagaagggggtgtgtttTCAAAGTTCCTTACCTATTTGAATCATAGTGTT
ATCCTTTAAGACAATCCAAATATTGATGATATGTTGTATTTACGTCTTTT
ACCAGTTGCTACATAGACTGTTATCAGCATTTTAGAAAATATCTAAAATG
GTATTCAGAAGTAAAATCTACACAGAGCAAATAGGTAAGAATTTTTGTTA
AACATCTTTTCTACGCTTCTGTggtttttcatataatttcatACATCAGA
CCAGTATCGATACTTCTATTGATGTAAATATTATACTGAACTTTTTGATA
CCTATATACGAAATGGATATTACTCTTTACAAAATCCGTAATACTGTTTA
AAGCAGAAACAACGTTATACAATTAAATGACATAAAAAGCGTGaaagaca
aaatatttaattagaTTTATCGTGAAAGCTTTTATAATGTTTTATCATCT
CGTATTCTAGATAATTCTTTTAACACTATATCTAGAAAGAGTTTTGGTCA
GAGAGCTGTATGACCTCTCAAGACAACATTTcttaGGGGGAGGGTACTGG
CCTTGAGAGTCGACGCCAAACGGTGACGTACCGCTGCTGTAGTTTGGAaa
ttggaccctgtcagatatcgaTCATTGGCAAATACTTCAACAGATGAATT
gtatcagaggaatgtaaagagatggaaaaacagcttcttgaaaacaatgg
aaaaacggctcgtcacataccaggtctcttgcccttaagggagtttatgt
cgagtaaataggtttcttctgttgtcgctataaaaaatctgcataattag
cgtgttatgacaaaattcttttgtttcaagcctgattatgcgcaaacttt
tagggcttgtATTTTGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNctgtcttttctggactttcatttaatgac
ctaatcaacgtttttacaatagaattttcaatagaagtgatcgttgaact
ttgagtaatcagaaaagctgtttatCTAtctgtttacattcctctgattg
TATCAAAAGTAAAGTTTATTCCCTTTTTGGACtacaataataaaacaaaa
ggTATCGTTAGTATTTTAGGATAATTACTCCAAAACCAATTATCACGGGA
CCTTCTAAGatgcaaaacttgaaaataattcaaatgtcATTCTGAAAGGT
TGACGGCTGTaatctttaaaatttctgaTTTGCGAACCTATACGATATTT
TAGATCGGCCATCAAAATCTTAACAGTTTCCATACGTTTCACTTATCCAA
CAATCTTATTCACCAGACTATTTCAAATTTATGATGTTTCAAACCTTTTT
GTTTCCCATACATTTGTATACAAATGGAAGTATTTAAATCTCTACATTTG
TGACCGGTCCCAACATAAATGATGAAGCTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032189XLOC_032189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050811-exon-scaffold_189-1491911889:293794..294174TCONS_00050811-exon-scaffold_189-1491911889:293794..294174Clytia hemisphaericaexon
TCONS_00050811-exon-scaffold_189-1510915933:293794..294174TCONS_00050811-exon-scaffold_189-1510915933:293794..294174Clytia hemisphaericaexon
TCONS_00050811-exon-scaffold_189-1575043694:293794..294174TCONS_00050811-exon-scaffold_189-1575043694:293794..294174Clytia hemisphaericaexon
TCONS_00050811-exon-scaffold_189-1491911889:298389..298428TCONS_00050811-exon-scaffold_189-1491911889:298389..298428Clytia hemisphaericaexon
TCONS_00050811-exon-scaffold_189-1510915933:298389..298428TCONS_00050811-exon-scaffold_189-1510915933:298389..298428Clytia hemisphaericaexon
TCONS_00050811-exon-scaffold_189-1575043694:298389..298428TCONS_00050811-exon-scaffold_189-1575043694:298389..298428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:293794..298428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8846	11.4221	12.4996	11.674	0.677034	0.356667	0	0.402846	0.141021	0.524031	0.169546	0.445811	2.00336	0.231168	0	0	6.78388	5.27933	1.95684	1.11692	16.9752	14.8941	14.5016	12.8252	3.95283	7.21596	45.1752	60.4702	3.9006	2.83864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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