TCONS_00050816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050816
Unique NameTCONS_00050816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050816 ID=TCONS_00050816|Name=TCONS_00050816|organism=Clytia hemisphaerica|type=transcript|length=1607bp
ATTATGCAAACAGGTCATCGATAAAAAAGAAGACTACAACAAAGAAATTA
ACTGAAAGACATAGATAGAAAATGAGGGGACTGATCATTTTGCTGGCTTG
TGTTGTCAACTTTACGTTCGCATCACATGGATCCCATGGTTACAAAGCAA
GTGATGCTTGTACCACTTTCTCCGAATTCGCTCTTGTTTTGGACGAATCG
AAATCCATTCAACCAGACGATTGGAAAGCTGTAAAAAACTTCGCCAGCGA
AATAATCCAGACTGTTGGGATTTCGGCTGCCGGCAATAGAGCTGGTATTG
CATCATTCTCTGACGAAGCAAGGATCAGAATCACGTGTAAAGAACATGAT
AATACGAAGGACTTTGAAAAAGCAATTGAAGGCTTGAATCAGACAGGCGA
TTATACGAACATGGAAGATGGCTTGATTAAAGgaaaatcattATTGGAGA
AGGGGTCAGGCTGTGGAGAACGTCCTTCAGTTTTCTCAAAAGTATTGGTC
ATTCTATCTGATGGTATTCCAAATAAAAGACCAAGAGGGTCTGATGGTGA
TGGGTTTGACTCACTCTTCCAAAGAGCCAAAGAAATCCGCGGTGACGGCA
CCAAAATCATTGCTATCGGCGTTGGAGATGAATTCGAAGAATCCAAACAG
CAAAAACGCGATTTCACTGGTTTAGGCATCCTCCGTAAAATTACTGGAAG
CCCAATGTACGTTTTCACGAGTCAAACATTCAGTCAATTAACCAATAGTG
ATTTCATCAAACAAGTTATCGACCCTATTTGTACAGATCCTTTAAAGACA
TCTGTTAAACCATTCCCAAGAACGAAACCGAAGCCTACTCAACCAGGTGG
TGGATCTAAAACAAAGTCGCCAACTACAAAACCAGTCACTCAAGACCCGA
CAAAAGCAACAACAAAGGCTACAGAACCAGCTTCAGAGCCGTCCACAGTC
AAACCTAACCATCGAACAAAACAAACTCCCAAAACTCCTTCCACTAAAAA
ACCTACACCTACACAAAAGAAACCAGATACAACTAAGGGTCCAGCACCAC
GACCTACGACCTCAAAACCAGGTCCCCCAGGTCCAACTGAAGACCCAGAC
ACTGGAATATGTAGATGTATTGGTGCAACTGAAAGTCACTTCCCAGCATT
GAGTTTATCTGTCTTCGATATCGAAGAGTTCCCAGGtaaatatttttcga
attttttagcCTAAGTNGACACTGGAATATGTAGATGCACTGGTGCAACT
GAAAGTCACTTCCCAGCATTGAGTTTATCTGTCTTCGATATCGAACAGTT
CCCAGGAGAAGCTCGAAAAGACAAATTAAAAGCAGCCATTACAAGTATCA
TTAAACAACGACGTCAAATCAAAGTGCTCCGTGCGCAATACAACGGTTGC
AAAAAATCTTTACGTAACATGCTACTCAAGactgtcaaaaaattcaagga
CGGCACTGATCTTTTCCTTAACATTGATGAATGCACTGCAAAGGCTGAAT
GTAAATTCCCAACATGGATTATGAGGTTGGAACAGAAGAAATGTAAATTA
GAAGATGAATTGAGATGGTATGAAGGAACCTTTGGACGCATTTATGATTA
TGGTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_189:128822..133780-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050816 ID=TCONS_00050816|Name=TCONS_00050816|organism=Clytia hemisphaerica|type=transcript|length=4959bp|location=Sequence derived from alignment at scaffold_189:128822..133780- (Clytia hemisphaerica)
ATTATGCAAACAGGTCATCGATAAAAAAGAAGACTACAACAAAGAAATTA
ACTGAAAGACATAGATAGAAAATGAGGGGACTGATCATTTTGCTGGCTTG
TGTTGTCAACTGTAAGTATCTGAACTTGATTATTCATTTACAAGACCTGC
ATTCGTACTCTCTCTTATTTGGAAATTCAGTCAAATATTTTAACATATGT
CCTAGTGAAAAGAGCATTTTCAATCATTATTTTGGATTCTTTGCAACATC
CTTGTTGGTGATTTTTATTCGAAATTTGACACTGGTTTAAAGCACTTTTA
TACTGAAGATACTTAAAGAGCGAGAAACGTTGTTCAAAAATCATATAACA
TTATGAATTTTCATCTGTTGACTCTCATGTTTGTAACTAGTGGATCTTCT
CGAATTAACGCAAAAATATTTAATTCGGCTCCCATTAACATATGGGCATG
GCATTCATGAAAGCAAGTATTAAAAGAGGATATACTGCAGAAGGGGGATA
ATTTCACTAAATCAGTCAAAAAATGCAAAAAGATATACAAAAAATAAAAA
ATCCGCTTTCATTTTCAATCTTCAATCAAAATTCTTCACTACAAAATGGC
GTCGATTTCGATTTCTTTCCTGTTTACACTCTTTCGGTCAATCTTAACAT
ATCTTTATCAAATCCGGCGATTTAAAATACACCTGCTTCAATATACGCAT
ATTTCATAATGGTATTATCAATCACGTAACAAGATTTAGCTTTGATTAAT
CAGAAAGCCATTTAAAGCATTACACTCGTACGGTAATTCCATAAACTTAA
GTCCTCTCTAATTAAGAAAAGAATTGATGCTATCAAATCCCTAAAATATC
AGCTTCAGTAATTACTAAGAATAAAATGAAAAAAATAATACTTTTAAGTG
TTTTTTTAAAGCAGGTAATACGGGCGGATCATCTCCAAGTAGATCCTGAT
TGCTCCATTGAATTTTGCATGAGGAGCCAGTATATGCAGGGGGGTTATCC
ATGTATCAATATCAGTGTCTACTCGGAAACTACTAATGTGGAGGTTTAGG
TACGCAACCAATTTAAATGCTTCGATAGAAGGCCCTGCTTAGTAGGGTTG
TTGCCAAAAAGCAAATCCTTCAGTCTAAATCATCTGCGAAAGACTTTTTT
CTGAGTCGCTTGCTGTGGAAAAATAATTCAATATCAAATTAAAATTTCCA
TCACATCTGTTTTTTATTCTAAAGTTACGTTCGCATCACATGGATCCCAT
GGTTACAAAGCAAGTGATGCTTGTACCACTTTCTCCGAATTCGCTCTTGT
TTTGGACGAATCGAAATCCATTCAACCAGACGATTGGAAAGCTGTAAAAA
ACTTCGCCAGCGAAATAATCCAGACTGTTGGGATTTCGGCTGCCGGCAAT
AGAGCTGGTATTGCATCATTCTCTGACGAAGCAAGGATCAGAATCACGTG
TAAAGAACATGATAATACGAAGGACTTTGAAAAAGCAATTGAAGGCTTGA
ATCAGACAGGCGATTATACGAACATGGAAGATGGCTTGATTAAAGGTATA
TTGATTGTTCATTACTTTAGATAATGATTAGGAGAGAACTCTAAACAGAA
CATCCTTTCTCTAAACGTTTCGGCCTCAACAGTAAAATATTTTGTTGTAA
TCAACAATTCAACATTACAACAAAATTTTTTGCTGATGATGGTACTCTGT
TGAGGCCGAAACGTTTTGAAAAATAAATTTCAAAAATGAACCAAAAGCAG
CTTCTGTTATTTAATCTTTTACTGAAATTGTATATGGAAGGATTGATTTA
TTTAACATCCTTTCTATAGTACCTAACAGTTTCTTGGCAAGGTCTTGTTC
TTGGTACGAAATTGCAAGGTATGACAAACAAAATCCAAACAGCATTGAAG
ACAAACAGATACCCAGAGAGACAGACATTCTAAAATTCTAGTTACTTCTT
TAGTATAAATAGGGAAATTGCGACTATTGAACTCTTCTTTTTATATTCAT
TTTTTTAGGAAAATCATTATTGGAGAAGGGGTCAGGCTGTGGAGAACGTC
CTTCAGTTTTCTCAAAAGTATTGGTCATTCTATCTGATGGTATTCCAAAT
AAAAGACCAAGAGGGTCTGATGGTGATGGGTTTGACTCACTCTTCCAAAG
AGCCAAAGAAATCCGCGGTGACGGTAAGTTCAACCACTGGAATCCGTGAA
TTAATAGCGAGTTTATGTATTTCAACTTTTGAGGACGGTAGAGTGACTGA
AGCAATTTGGAATAACCCGCACAGGGGGGGGGGCACGCAGTTACTACAAG
ACATGATGTGTAGTAAGTGCTTTTTCAACACTTTTTTTCAGGACCACCAC
CCTTTGCAGTTACTACACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTGAC
CCGCACACAAATCGAGGACAGTAAAAGTGCTAATTTACTGTCGTCCTGAG
TCAGTCAGGATGAAGACAAATTTAGAGCTTTACCGTCTCTGTCGCAGAAA
AACACACATACATAAACTCGGTAATATCAGAGTGTGGTTTGCTTTTAAAG
TAGGCTATTGAATTTTAGAAAGTCATTTGGCCATTGATTCAATCATAAAT
TGCTACTAAGTACTTAATAACTTTCACTTAGGATTGCATACTAGTTAAGA
TTTTACCCGTAACAACGTCTCTTATGCAAATTAAGCAAAACTTTGTCGAT
TTTTGTGCGAGAGAAATTGGTAGATTGATTTTGCGATTGATTGCGATTGA
TCAGGTTCTACAGACAAGACAAAAAGACAACTTATTAATTTCCTCAATTC
AACAGGCACCAAAATCATTGCTATCGGCGTTGGAGATGAATTCGAAGAAT
CCAAACAGCAAAAACGCGATTTCACTGGTTTAGGCATCCTCCGTAAAATT
ACTGGAAGCCCAATGTACGTTTTCACGAGTCAAACATTCAGTCAATTAAC
CAATAGTGATTTCATCAAACAAGTTATCGACCCTATTTGTACAGATCCTT
TAAAGACATCTGTTAAACCATTCCCAAGAACGAAACCGAAGCCTACTCAA
CCAGGTGGTGGATCTAAAACAAAGTCGCCAACTACAAAACCAGTCACTCA
AGACCCGACAAAAGCAACAACAAAGGCTACAGAACCAGCTTCAGAGCCGT
CCACAGTCAAACCTAACCATCGAACAAAACAAACTCCCAAAACTCCTTCC
ACTAAAAAACCTACACCTACACAAAAGAAACCAGATACAACTAAGGGTCC
AGCACCACGACCTACGACCTCAAAACCAGGTCCCCCAGGTCCAACTGAAG
ACCCAGACACTGGAATATGTAGATGTATTGGTGCAACTGAAAGTCACTTC
CCAGCATTGAGTTTATCTGTCTTCGATATCGAAGAGTTCCCAGGTAAATA
TTTTTCGAATTTTTTAGCCTAAGTNGACACTGGAATATGTAGATGCACTG
GTGCAACTGAAAGTCACTTCCCAGCATTGAGTTTATCTGTCTTCGATATC
GAACAGTTCCCAGGTAAATATCTTTCGAATTTTTTAGCCTAAGTCAATCG
AACAACCTCTAACTAAAATTGTGGGTAAATTCTCTTGTTAGAGTGATACA
TAAACTGGATTAGAAGAACCTTAAACCTTTTTAGTTCGGATGGTTTAGAT
TTCAAAGTAAAATTTATTCAATGGATTACCCAGGGCAAGTGGGTGAGTAA
ACATGAAACTATAAAGCTGCTAACTTTCTAAATTTATATAGGAGAAGCTC
GAAAAGACAAATTAAAAGCAGCCATTACAAGTATCATTAAACAACGACGT
CAAATCAAAGTGCTCCGTGCGCAATACAACGGTTGCAAAAAATCTTTACG
TAACATGCTACTCAAGGTAAGTTTACGATTATGTTCAACACAAGTCACTA
ACTAAACAGTAAGCTCCAGACTACTGAAAGTGTATGGAGTTGGGGATCTG
GTTGTCGATACGATTTGACAGCCGGTAGAGTTAGCGGTCTTCTTCGAAAT
TAAGTCTGCCGCGGCAGATTTTCTGTCGATTTTCTTCATTAATAGCTGTA
AATTATGAACATAATTATTTTCCCGCGTGTAAAATTGCTGTAATATGGAA
GGTAACATCTTCTACGTAATTATGGAGTGAAAGTTCACCGTGTCATCAAA
TACTTCTTCCAAAAGATACGCGAAGGGCTCTCTCATTGTGTTTCTGTATG
ATGAATCATTTCATTTTTTCTTTAATTTTCAGACTGTCAAAAAATTCAAG
GACGGCACTGATCTTTTCCTTAACATTGATGAATGCACTGCAAAGGCTGA
ATGTAAATTCCCAACATGGATTATGAGGTTGGAACAGAAGAAATGTAAAT
TAGAAGATGAATTGAGATGGTATGAAGGAACCTTTGGACGCATTTATGAT
TATGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032193XLOC_032193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050816-exon-scaffold_189-1575043694:133670..133780TCONS_00050816-exon-scaffold_189-1575043694:133670..133780Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1575043694:132236..132556TCONS_00050816-exon-scaffold_189-1575043694:132236..132556Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1575043694:131608..131772TCONS_00050816-exon-scaffold_189-1575043694:131608..131772Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1575043694:129718..130425TCONS_00050816-exon-scaffold_189-1575043694:129718..130425Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1575043694:129365..129489TCONS_00050816-exon-scaffold_189-1575043694:129365..129489Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1575043694:128822..128998TCONS_00050816-exon-scaffold_189-1575043694:128822..128998Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:133670..133780TCONS_00050816-exon-scaffold_189-1510915933:133670..133780Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:132236..132556TCONS_00050816-exon-scaffold_189-1510915933:132236..132556Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:131608..131772TCONS_00050816-exon-scaffold_189-1510915933:131608..131772Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:129718..130425TCONS_00050816-exon-scaffold_189-1510915933:129718..130425Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:129365..129489TCONS_00050816-exon-scaffold_189-1510915933:129365..129489Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1510915933:128822..128998TCONS_00050816-exon-scaffold_189-1510915933:128822..128998Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:133670..133780TCONS_00050816-exon-scaffold_189-1491911889:133670..133780Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:132236..132556TCONS_00050816-exon-scaffold_189-1491911889:132236..132556Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:131608..131772TCONS_00050816-exon-scaffold_189-1491911889:131608..131772Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:129718..130425TCONS_00050816-exon-scaffold_189-1491911889:129718..130425Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:129365..129489TCONS_00050816-exon-scaffold_189-1491911889:129365..129489Clytia hemisphaericaexon
TCONS_00050816-exon-scaffold_189-1491911889:128822..128998TCONS_00050816-exon-scaffold_189-1491911889:128822..128998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:128822..133780 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.19265	1.06283	0	0	0	0	0	0	0.265544	3.08319	4.05128	0.967517	0	0	0	0	0	0.035904	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top