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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050818 ID=TCONS_00050818|Name=TCONS_00050818|organism=Clytia hemisphaerica|type=transcript|length=1275bp
GGCTGAGCATGGGATGGAGAATGTCGACTTAGAGAGCGtcaatttccacc
attatggaaggaaatttttgaatCTATTAAGGCgatcccttacgcaaatc
gaacgcttgctttcataatggcggaaatttcGATTTAAAATACCGATATC
CAAACCAACTTATAATATCATTTCAATCATAGaagaataaaatacaaacc
aCGCTATGACAACCACTCAAACATTAAGGTACTTGGTCACACTGGCCATA
TTAACGACGATTACAACTGGCTTTCCCATTGGTCATCACAGTAAGGGACT
GAGCACTACTTGTGCATACTTCTCATGGGTATTATGCGACGCGCCGAAGA
AGAGAGACAATATTGAAACTAATGAAGAATCAAACAATTTGACGATGCTA
ACTGACGGAAAAACAGATACCAAAGAAGAAGTAGGCGAAaacgaaggaac
gaaggaaTCAACGAACGAAAGAACGAATGAATCAGTTAACGAGGAAGAGA
TGGAACAACAGATCGAGAAATCATTAGTTGATTTACAAATCGAACATATC
AGGAAATATGTACTGAATGAAATTTTAGACAGTAAAAACATGACGCTACC
TGAAAAAGAACATTTGCTAGATGAGGCTCTGGAACTAAGATGATATAGAA
GTCTACCTGACATGCATAACACgttttcttttctataaaaacgcCAGAAA
TGTTTTAAGCCTAAAGGGAATCATcctgaaattttcttatttcaagCATT
TGGAGAGTATAACTTAAAAATTTCacgttttagagtctgcaatgccttaa
aatgtccttagaatattcttgattttttttggctgTGTTCtaatatactt
tgttcttataaaaacagcgTGTGTTATAATACCACCCAATACCTTCTTAG
TTGGTACGAAACGTCACAAATACATCCAATTAACATCCATAAGTCGTTCA
GAAGCTTGGCTCGGTTAACACAATGCACGTCTTTAAAGGCGAAAACCAAA
ATCAACAATGTCAATATGGAAAATTGGATGAGGTCATTATAATcctccaa
aaattaaaactcaTTAAACTTGTAAATAATCATTCAATAATTCCCTTATC
AAGACAATTAATTTAATGTGAATTTTAAACGTGATtgtattttggacttt
ttattCCACCCTCTTTCTATGCCGAACAATTCTTAGTATCCTGAAGTCTT
TGGTCTTGAGGGGGCGGGTTTCATGCTTGGCGGAGGAGcagaatcggccc
ttttttggGAAGGAGTGgcgaaatt Run BLAST on NCBI protein sequence of TCONS_00050818-protein >TCONS_00050818-protein ID=TCONS_00050818-protein|Name=TCONS_00050818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MTTTQTLRYLVTLAILTTITTGFPIGHHSKGLSTTCAYFSWVLCDAPKKR
DNIETNEESNNLTMLTDGKTDTKEEVGENEGTKESTNERTNESVNEEEME
QQIEKSLVDLQIEHIRKYVLNEILDSKNMTLPEKEHLLDEALELR Run BLAST on NCBI transcript from alignment at scaffold_189:156729..159089- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050818 ID=TCONS_00050818|Name=TCONS_00050818|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at scaffold_189:156729..159089- (Clytia hemisphaerica)
GGCTGAGCATGGGATGGAGAATGTCGACTTAGAGAGCGTCAATTTCCACC
ATTATGGAAGGAAATTTTTGAATCTATTAAGGCGATCCCTTACGCAAATC
GAACGCTTGCTTTCATAATGGCGGAAATTTCGATTTAAAATACCGATATC
CAAACCAACTTATAATATCATTTCAATCATAGAAGAATAAAATACAAACC
ACGCTATGACAACCACTCAAACATTAAGGTACTTGGTCACACTGGCCATA
TTAACGACGATTACAACTGGCTTTCCCATTGGTCATCACAGTAAGGGACT
GAGCACTACTTGTGCATACTTCTCATGGGTATTATGCGACGCGCCGAAGA
AGAGAGACAATATTGAAACTAATGAAGAATCAAACGTGAGTAGCGTCCAA
GCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTTATATGGACGTTG
TGAACGTTAGATAAACGTTGAAACAACGTTGTGTGCCAGCTTGGGTTTAA
GTCATAAACCGTTTAAGTAATTTTTTCGAACGGAGTAGGAACAAAAGGCT
CTTCTTTTTCTAATCTCCGAGCAGATTTTGATACTCTGCGCATGAGACCA
ATAACAAACATAATAATCAGAAGCCAGTCGCTTTCACTTTCGTTTTCAAG
CAAAAAGAAACGCGGGTTTTGATTGTTTTGACAACTGTGTCAAACCGTCA
TATTTGCCATGCGCAGAATGAATGATCTGTTATGAGATTATTCTTTTTCT
AACTAACTTCCCGAAAGTAGGGGAAAGGGTACCTGCTTACCCTATATCCT
CCTCCTCAATCTAAGAAGAAAAACATTAACCAACTTTTTTATTAAGTTCC
TGGTAAGTCTTTGACCTGACGTCCAACCCTGGTCTGGAAGCCTTTTGTTT
CCTTCCATTGTTTCTTAGTTGAACTTGCGTTCAGAAGTCAGTTTGTTTTG
CTCACTTTTTGATCATGTGATTAAATCTTAAACCAATCCCAAGTACTCCC
CGTACTTGGTAACGTGATCAAAAACTGAGCAAGTCGATTTTTATCTTTTG
ATATCAAAAAAGGAAAAAGCTAACAAAAAGTTAAAACAATAAGCTTTCAG
ACCAGTGTTTTTCATAGGGACTTATGGTCTTACGCACCTAACTAAATGGA
AAATGTTAGATAACAATTTTGTACCCGCACTGGTTGGGAAAATACCGATC
TTCCAACAGAAATATGGTCACGATGTCTCGAATTCGCACTTTACATTTAA
ATGGAAGTAAAGTGTTTCTGGAAACATCTAAGTAACCTTTTCCACTTAAA
AATAATGTTAGAACAATCCAAATCTTAGAAATGGCTACGAAATGCTAATT
TTAAGCCCTTTTTTAAGCAAAAAAGTCAATAACAAAAGTAGAATAAAACT
TTATTAAATAAGCCTACAATGAATCTGATGGCTTGTACACACTGAAATTT
TAATTTGTATTCTTTTTCTAGAATTTGACGATGCTAACTGACGGAAAAAC
AGATACCAAAGAAGAAGTAGGCGAAAACGAAGGAACGAAGGAATCAACGA
ACGAAAGAACGAATGAATCAGTTAACGAGGAAGAGATGGAACAACAGATC
GAGAAATCATTAGTTGATTTACAAATCGAACATATCAGGAAATATGTACT
GAATGAAATTTTAGACAGTAAAAACATGACGCTACCTGAAAAAGAACATT
TGCTAGATGAGGCTCTGGAACTAAGATGATATAGAAGTCTACCTGACATG
CATAACACGTTTTCTTTTCTATAAAAACGCCAGAAATGTTTTAAGCCTAA
AGGGAATCATCCTGAAATTTTCTTATTTCAAGCATTTGGAGAGTATAACT
TAAAAATTTCACGTTTTAGAGTCTGCAATGCCTTAAAATGTCCTTAGAAT
ATTCTTGATTTTTTTTGGCTGTGTTCTAATATACTTTGTTCTTATAAAAA
CAGCGTGTGTTATAATACCACCCAATACCTTCTTAGTTGGTACGAAACGT
CACAAATACATCCAATTAACATCCATAAGTCGTTCAGAAGCTTGGCTCGG
TTAACACAATGCACGTCTTTAAAGGCGAAAACCAAAATCAACAATGTCAA
TATGGAAAATTGGATGAGGTCATTATAATCCTCCAAAAATTAAAACTCAT
TAAACTTGTAAATAATCATTCAATAATTCCCTTATCAAGACAATTAATTT
AATGTGAATTTTAAACGTGATTGTATTTTGGACTTTTTATTCCACCCTCT
TTCTATGCCGAACAATTCTTAGTATCCTGAAGTCTTTGGTCTTGAGGGGG
CGGGTTTCATGCTTGGCGGAGGAGCAGAATCGGCCCTTTTTTGGGAAGGA
GTGGCGAAATT Coding sequence (CDS) from alignment at scaffold_189:156729..159089- >TCONS_00050818 ID=TCONS_00050818|Name=TCONS_00050818|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_189:156729..159089- (Clytia hemisphaerica)
AATTTGACGATGCTAACTGACGGAAAAACAGATACCAAAGAAGAAGTAGG
CGAAAACGAAGGAACGAAGGAATCAACGAACGAAAGAACGAATGAATCAG
TTAACGAGGAAGAGATGGAACAACAGATCGAGAAATCATTAGTTGATTTA
CAAATCGAACATATCAGGAAATATGTACTGAATGAAATTTTAGACAGTAA
AAACATGACGCTACCTGAAAAAGAACATTTGCTAGATGAGGCTCTGGAAC
TAAGATGAATGACAACCACTCAAACATTAAGGTACTTGGTCACACTGGCC
ATATTAACGACGATTACAACTGGCTTTCCCATTGGTCATCACAGTAAGGG
ACTGAGCACTACTTGTGCATACTTCTCATGGGTATTATGCGACGCGCCGA
AGAAGAGAGACAATATTGAAACTAATGAAGAATCAAACAATTTGACGATG
CTAACTGACGGAAAAACAGATACCAAAGAAGAAGTAGGCGAAAACGAAGG
AACGAAGGAATCAACGAACGAAAGAACGAATGAATCAGTTAACGAGGAAG
AGATGGAACAACAGATCGAGAAATCATTAGTTGATTTACAAATCGAACAT
ATCAGGAAATATGTACTGAATGAAATTTTAGACAGTAAAAACATGACGCT
ACCTGAAAAAGAACATTTGCTAGATGAGGCTCTGGAACTAAGATGAATGA
CAACCACTCAAACATTAAGGTACTTGGTCACACTGGCCATATTAACGACG
ATTACAACTGGCTTTCCCATTGGTCATCACAGTAAGGGACTGAGCACTAC
TTGTGCATACTTCTCATGGGTATTATGCGACGCGCCGAAGAAGAGAGACA
ATATTGAAACTAATGAAGAATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050818-exon-scaffold_189-1575043694:158705..159089 | TCONS_00050818-exon-scaffold_189-1575043694:158705..159089 | Clytia hemisphaerica | exon |
| TCONS_00050818-exon-scaffold_189-1575043694:156729..157618 | TCONS_00050818-exon-scaffold_189-1575043694:156729..157618 | Clytia hemisphaerica | exon |
| TCONS_00050818-exon-scaffold_189-1510915933:158705..159089 | TCONS_00050818-exon-scaffold_189-1510915933:158705..159089 | Clytia hemisphaerica | exon |
| TCONS_00050818-exon-scaffold_189-1510915933:156729..157618 | TCONS_00050818-exon-scaffold_189-1510915933:156729..157618 | Clytia hemisphaerica | exon |
| TCONS_00050818-exon-scaffold_189-1491911889:158705..159089 | TCONS_00050818-exon-scaffold_189-1491911889:158705..159089 | Clytia hemisphaerica | exon |
| TCONS_00050818-exon-scaffold_189-1491911889:156729..157618 | TCONS_00050818-exon-scaffold_189-1491911889:156729..157618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:156729..159089 - |
Blast
The following BLAST results are available for this feature:
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