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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050819 ID=TCONS_00050819|Name=TCONS_00050819|organism=Clytia hemisphaerica|type=transcript|length=2174bp
CAATGGTGATAGGTTATGAGATTAGTGCCAGCTGAGATTTCATATTCATA
CAGCACAGGGAGTGATTGGACATTTAAAGGAGATATTCAGAGAAGAATTT
CCGGGGGTCAGGGAAGTTAATAATTTTTCGCAAGAGTTTGatttaaattg
attttattaaaattcaaagGAGTACTACCAGAAGATAAATTTCCAAGAGT
TTCCAAGAATCTGAAACCTTTTCCTGGGTGCTAAATGTTATTATAAAATT
TTCAGGGCGTAAATGAAAGGTTCATCTACCCCGCCccctgttttgttttg
ttttgttaaaaCAACACCCAAACCCCATCAATCAAAGTAATATCAAATAG
AAAAACCTTCATGATAAATAAACTCAAACCGATTCATGATTTGAACTAGT
AAATGACTTTAATTCATTATTTAGTAAGATTTACCATGACAGCAAAAATG
TTATTACAAAATTTTCAGGGCGTAAATGAAAGGTTCATCTACCCCACCcc
ctgttttgtttttgttaaaaCAACACCCAAACCCCATCAATCAAAGTATA
GAAAAACCTTCATGatcaataaaattcaaatctGAACTAGTATTGAACTA
GTAAATGACTTTAATTCATTATTTAGTAGGACTTACCATGACagcaaaat
tgaatgaaaattgtaaaaaaaggagaaaaaaatccccatcagaaattaat
tttagtatcaaaaatttctaatttctaaaTGCATAAAGATGGATGCTTCT
GTACTTTGGTTTGGCCTCCTTTTATGTGTTCATTTCTCATTTGGGCAATT
TATGCCATTTCTACCATTCAAACATCTCCATACAAACACTGCTATCGATG
GACCTCAACCATGGTTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTC
GATAAATGCCTCAAAAACTTCACTCACTGTGAATATGTACAACATAAACA
AATGACCACTACAACATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTC
TGTCAAATTATTTGGTTTCACAAACCGGAGAAATGCTGGCTCAAGCTGTC
CACGAAAACATTGGCTGTGAAGATTGGAGATCTAGAGGTTATACAAAGTC
GGATATTTACTGGATTTTCTACAACAGAAATAAGTTCAAAGTATATTGTG
GCTTAGGCGGTCCAGATTCGTGGACATTGATAGACAAACGACAAGATGGT
TCGGTCAGTTTCAATCGTTTATGGCAAGAATACAAAGACGGTTTCGGAGA
TCTGAGCGGTGAATTTTATTTGGGTAATGAAAAAATCCATCTCTTAACAA
AAGACCGTGAAATGATGGTTTATCTGCAACTTTGGGCTTTTGATGGTACG
AAGTATGCAGTCGGGTTTAAAGGCTTCTTTATCGAAGATGAAGCTAATAA
ATATAGGTTACACTCAGGTACATATGATTTCGGTGACCCAAACTTCGGGA
GCGAATGGACTGACATGAACGGAAGTAAATTTTCAACCCGAGACGACGAC
AATGACAGAGCCACAACAATGCATTGTGGAGATAAATGGAAAACAGGTTG
GTGGTTTACGAATTGTGGAGGTTGTTATCTCCATAATGTTTATTCTGGTG
TACCCGACGTACCGAAACGACACGGAATTACTTGCGGAAGATTGAGAGGT
GACtttgaaagcttcaaaaaactCGTGATATCTATTCGACCCGTTGGCTA
ATTAATTTTAATTGATTTATTTAATCACCAAATATTCaatcaataaaatt
taattGATAGAAAAAAGCAGTGAGTTTataactacacgttttttataaga
acaaactatataagaacatgaggcttcgatggccaaaatgttaagaacaa
gctaagaacattttaaggcttcgcgggctctaaaaacacccgatttctta
ggaaaattgacaaaattactcaaaaaaggatcaaaataagaacattttta
gtcttaaaactcaaaaagttaagaacattcgaaggctttaaaagttttgg
atgttcttataaaaaaacgtgtatgtcatgtcatgctttattcgatAAGC
GTTATCTATTATTATCCGTCGTCAGTGTTGTAATTTTTGGAAAGGTGATT
GTAACATGAACTGAGCAACCAAAAGAGGGAGAGAAACTGACGGTAGCGAA
TTACTGTCTTTCCCTTGGAAAGAG Run BLAST on NCBI transcript from alignment at scaffold_189:206811..208984- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050819 ID=TCONS_00050819|Name=TCONS_00050819|organism=Clytia hemisphaerica|type=transcript|length=2174bp|location=Sequence derived from alignment at scaffold_189:206811..208984- (Clytia hemisphaerica)
CAATGGTGATAGGTTATGAGATTAGTGCCAGCTGAGATTTCATATTCATA
CAGCACAGGGAGTGATTGGACATTTAAAGGAGATATTCAGAGAAGAATTT
CCGGGGGTCAGGGAAGTTAATAATTTTTCGCAAGAGTTTGATTTAAATTG
ATTTTATTAAAATTCAAAGGAGTACTACCAGAAGATAAATTTCCAAGAGT
TTCCAAGAATCTGAAACCTTTTCCTGGGTGCTAAATGTTATTATAAAATT
TTCAGGGCGTAAATGAAAGGTTCATCTACCCCGCCCCCTGTTTTGTTTTG
TTTTGTTAAAACAACACCCAAACCCCATCAATCAAAGTAATATCAAATAG
AAAAACCTTCATGATAAATAAACTCAAACCGATTCATGATTTGAACTAGT
AAATGACTTTAATTCATTATTTAGTAAGATTTACCATGACAGCAAAAATG
TTATTACAAAATTTTCAGGGCGTAAATGAAAGGTTCATCTACCCCACCCC
CTGTTTTGTTTTTGTTAAAACAACACCCAAACCCCATCAATCAAAGTATA
GAAAAACCTTCATGATCAATAAAATTCAAATCTGAACTAGTATTGAACTA
GTAAATGACTTTAATTCATTATTTAGTAGGACTTACCATGACAGCAAAAT
TGAATGAAAATTGTAAAAAAAGGAGAAAAAAATCCCCATCAGAAATTAAT
TTTAGTATCAAAAATTTCTAATTTCTAAATGCATAAAGATGGATGCTTCT
GTACTTTGGTTTGGCCTCCTTTTATGTGTTCATTTCTCATTTGGGCAATT
TATGCCATTTCTACCATTCAAACATCTCCATACAAACACTGCTATCGATG
GACCTCAACCATGGTTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTC
GATAAATGCCTCAAAAACTTCACTCACTGTGAATATGTACAACATAAACA
AATGACCACTACAACATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTC
TGTCAAATTATTTGGTTTCACAAACCGGAGAAATGCTGGCTCAAGCTGTC
CACGAAAACATTGGCTGTGAAGATTGGAGATCTAGAGGTTATACAAAGTC
GGATATTTACTGGATTTTCTACAACAGAAATAAGTTCAAAGTATATTGTG
GCTTAGGCGGTCCAGATTCGTGGACATTGATAGACAAACGACAAGATGGT
TCGGTCAGTTTCAATCGTTTATGGCAAGAATACAAAGACGGTTTCGGAGA
TCTGAGCGGTGAATTTTATTTGGGTAATGAAAAAATCCATCTCTTAACAA
AAGACCGTGAAATGATGGTTTATCTGCAACTTTGGGCTTTTGATGGTACG
AAGTATGCAGTCGGGTTTAAAGGCTTCTTTATCGAAGATGAAGCTAATAA
ATATAGGTTACACTCAGGTACATATGATTTCGGTGACCCAAACTTCGGGA
GCGAATGGACTGACATGAACGGAAGTAAATTTTCAACCCGAGACGACGAC
AATGACAGAGCCACAACAATGCATTGTGGAGATAAATGGAAAACAGGTTG
GTGGTTTACGAATTGTGGAGGTTGTTATCTCCATAATGTTTATTCTGGTG
TACCCGACGTACCGAAACGACACGGAATTACTTGCGGAAGATTGAGAGGT
GACTTTGAAAGCTTCAAAAAACTCGTGATATCTATTCGACCCGTTGGCTA
ATTAATTTTAATTGATTTATTTAATCACCAAATATTCAATCAATAAAATT
TAATTGATAGAAAAAAGCAGTGAGTTTATAACTACACGTTTTTTATAAGA
ACAAACTATATAAGAACATGAGGCTTCGATGGCCAAAATGTTAAGAACAA
GCTAAGAACATTTTAAGGCTTCGCGGGCTCTAAAAACACCCGATTTCTTA
GGAAAATTGACAAAATTACTCAAAAAAGGATCAAAATAAGAACATTTTTA
GTCTTAAAACTCAAAAAGTTAAGAACATTCGAAGGCTTTAAAAGTTTTGG
ATGTTCTTATAAAAAAACGTGTATGTCATGTCATGCTTTATTCGATAAGC
GTTATCTATTATTATCCGTCGTCAGTGTTGTAATTTTTGGAAAGGTGATT
GTAACATGAACTGAGCAACCAAAAGAGGGAGAGAAACTGACGGTAGCGAA
TTACTGTCTTTCCCTTGGAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050819-exon-scaffold_189-1575043694:206811..208984 | TCONS_00050819-exon-scaffold_189-1575043694:206811..208984 | Clytia hemisphaerica | exon |
| TCONS_00050819-exon-scaffold_189-1510915933:206811..208984 | TCONS_00050819-exon-scaffold_189-1510915933:206811..208984 | Clytia hemisphaerica | exon |
| TCONS_00050819-exon-scaffold_189-1491911889:206811..208984 | TCONS_00050819-exon-scaffold_189-1491911889:206811..208984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:206811..208984 - |
Blast
BLAST of TCONS_00050819 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.192e-32 Identity = 87/229 (37.99%), Postives = 125/229 (54.59%), Query Frame = 1
Query: 1066 CEDWRSRGYTKSDIYWIFYN--RNKFKVYCGL---GGPDSWTLIDKRQDGSVSFNRLWQEYKDGFGDLSGEFYLGNEKIHLLTKDREMMVYLQLWAFDGTKYAVGFKGFFIEDEANKYRLHSGTYD--FGDPNFGSEWTDMNGSKFSTRDDDNDRATTMHCGDKWKTGWWFTNC-----GGCYLHNVYSGVPDVPKRHGITCGRLRGDFE--------SFKKLVISIRP 1692
C D+ + G S+ Y + + + F+VYC + GG WT++ R DGS +F R WQ+YK GFG+L EF+LGN+KIHLLTK +EM++ + L F+G + + F++ +E KYRLH G Y+ GD ++ + + F+T D DNDR + +CG + +GWWF C G Y H Y GV R+GI G G E SFK+ + IRP
Sbjct: 213 CSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGG--GWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGV-----RNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRP 434
The following BLAST results are available for this feature:
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