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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050820 ID=TCONS_00050820|Name=TCONS_00050820|organism=Clytia hemisphaerica|type=transcript|length=999bp
ATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCTTGATATTC
TATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTACCATTCAAA
CACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGGTTTGACGG
AGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAAAAACTTCa
ctcattgtgaatatgtacaACATAAACAAATGACCACAACAACATGGCTT
TGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTGGTTTCACA
AACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGGCTGTGAAG
ATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGATTTTCTAC
AACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCAGATTCGTG
GACATTGATAGACAAACGACAAGATGGTTCGGTCAGTTTCAATCGTTTAT
GGCAAGAATACAAAGACGGTTTCGGAGATCTGAGCGGTGAATTTTATTTG
GGTAATGAAAAAATCCATCTCTTAACAAAAGACCGTGAAATGATGGTTTA
TCTGCAACTTTGGGCTTTTGATGGTACGAAGTATGCAGTCGGGTTTAAAG
GCTTCTTTATCGAAGATGAAGCTAATAAATATAGGTTACACTCAGGTACA
TATGATTTCGGTGACCCAAACTTCGGGAGCGAATGGACTGACATGAACGG
AAGTAAATTTTCAACCCGAGACGACGACAATGACAGAGCCACAACAATGC
ATTGTGGAGATAAATGGAAAACAGGTTGGTGGTTTACGAATTGTGGAGGT
TGTTATCTCCATAATGTTTATTCTGGTGTACCCGACGTACCGAAACGACA
CGGAATTACTTGCGGAAGATTGAGAGGTGACtttgaaagcttcaaaaaac
tCGTGATATCTATTCGACCCGTTGGCTAATTAATTTTAATTGATTTATT Run BLAST on NCBI transcript from alignment at scaffold_189:207264..212779- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050820 ID=TCONS_00050820|Name=TCONS_00050820|organism=Clytia hemisphaerica|type=transcript|length=5516bp|location=Sequence derived from alignment at scaffold_189:207264..212779- (Clytia hemisphaerica)
ATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCTTGATATTC
TATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTACCATTCAAA
CACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGGTTTGACGG
AGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAAAAACTTCA
CTCATTGTGAATATGTACAACATAAACAAATGACCACAACAACATGGCTT
TGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTGGTTTCACA
AACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGGCTGTGAAG
ATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGATTTTCTAC
AACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCAGATTCGTG
GACATTGATAGACAAACGTNCGGGTATTTACTGGATTTTCTACAACAGAA
ATAAGTTCAAAGTATATTGTGGCTTAGGCGGTCCAGATTCGTGGACATTG
ATAGACAAACGACAAGATGGTTCGGTCAGTTTCAATCGTTTATGGCAAGA
ATACAAAGACGGTTTCGGAGATCTGAGCGGTGAATTTTATTTGGGTAATG
AAAAAATCCATCTCTTAACAAAAGACCGTGAAATGATGGTTTATCTGCAA
CTTTGGGCTTTTGATGGTACAAAGTATGCAGTCGGGCTTAAAGGCTTCTT
TATCGAAGATGAAGCTAATAAATATAGGTTATGCTCAGGTACATATGATT
TCGGTGACCCAAACTTCGGGAGCGAATGGACTGGCATAAGTGGAAGTAAA
TTTTCAACCCGAGACGATGACAATGACATAACCACAAATATCCATTGTGG
AGATAAATGGAAAACAGGCTGGTGGTTTAAGAGTTGTGGAGGTTGTTATC
TCCATAATGTTTATTCCAGTGTACCCGACGTACCGAAACGACACGGAATT
ACTTGCGGAAGATTGAGAGGTGACTTTGAAAGCTTCAAAAAACTCGTGAT
ATCTATTCGACCCGTTGGCTAATTTTAATTGATCTATTTTTACGCCAATA
TTCAATCAATAAGATTTAATCGATATAAAAAAGCAGTGAGTTTTAACTTC
CTTATTGGTATTATATTTGGTGTGTATTAAATTTCGCGATTGCCAGTTTC
TGGAAATTTTCGCGTGTATTAAATTTCGCAATTCATTAAATTATGCATCT
TCAAAAATTGTAATCGTTATAGTAATCATCTTGTGGATTAACTGTTTGTG
ATTGCACGTTTTCTTCAATTCAAGTCTATGTACAGGGTGTCCCTAATTAA
AGTATCGAGTCGAAACACAACTATGAGTAGAAAGTTTTATGTGCGTGTTC
ACAAAATTGTATTTTAAGCTCTCCTTCTTTTTTCTTTGTCATTACGATTA
ATTTATACGTTGTAACTACCTTTTGTAATAAGCCTGTGTGATGGAGAACG
TTCTTATATTTTAGCGATAACACACACAAACTTTTCTACTCAATCGCATG
TTCAAACTCGATACTTTAATTAGGGACACCCTGTAGTTCAAAATCGATGT
TTATTCCAGTGTATGAATGTAAACATTGCACTAACCACTTGTCGTTAAAG
AGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATTGAAAC
AATCATTTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCCA
CTGCAAACGGATTGTTTACAAATTTCGTCAGTACTTTTATGTCCCTTTAA
ACGAAGCAACGTTGTCAATGTAACGACAGAGAAAATGTTTTGAAATCCCA
TCCCAGCTGGCACACAATAGTAGAGGGCATTTTGTAAAATCGCTTGACTG
TTTTGTTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGG
AATCGAAATTACTATGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATCATAGGGTTAAAAATTAATGAAAATTTTAGCT
CGAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTA
AGATTAGAGATATATTGGAAGTATAGGTGATTTCAGTACCTAACTCGGGA
TATTGAGCTTCACAAAGCGCAAAAACTGGACAAAATAGGTGTTTCTGGCT
GAAAAACACGGTTTTCAAGGATTAATATCTCGAGTTAGGTACAGAAATCA
CCTATACTTGCAATATATCTCTAATCTTAATTTTTTGAGAGCTTTCCAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTTTTAACCCTATGATTTTTGCCTGAGACCGTCAT
ATTTGTCCGAAAATCACACCAAAGTGTCCGAAAAAAAATTGGAAACATAG
TAATTTTGATTCCCCTAACCCTTAGCTTTCCAAAAATGCATAACAAGTGC
TTCTAACAAAACAGTCGAGCGATTCCAAAAAATCGAACAAAATTCCCCTA
CTACAACGTTGTTTCAACGTTTATCTAATGTTCATAACGTCCATATAACG
TTAGATGAACGTTGAAACAACGTTGAGTGCCAGCTTAACCTCCAAGCAGT
TCTTCGTGCTCCACGCATTCCACGCATGCGCTCTAAGGGGAATGGTTCTG
CAAGAAGACCTGCGAAGGTTCTCGGCTTTTCTTTGATGGCCGACACTCTG
AAATTTCAGAGTACTTTTCACGATTCAATCGCGACATTCGCATAAAATTT
ATCGATTTGCTCGGGCCGTCTTTGGATGCGTGGGCTAAACAAAACCGATT
CTACTGCGACCGTGGCTTTCTTTCTCCGAACCAAATCCAAGATGGCGCCT
GAAATTCACGTTTTGGCTCTTGGTCAATGTTTTGATTTTTTTATGGATTT
TGAGACTTATGAAGGAAAATTCAATGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCAAACACCAACCAAATTATTACAGGTATGTTCTCTTATGT
AATGATTACTTTTCTCTTGCTATCTGCTTGATTATTAGGAGGAATGAAGC
ATTTTATCAGAATAATGATAACTTAACGTGTGCGAAATGTCTGTCAGACA
TTCAACCGACAAAAAATTGATTCAAACACCAAGAGGTTGACTATTTTAGG
CTCTATATGTATTGTTGGATATTTGGATACTCTAATTCTTGGAAAATATT
CAATATTTCAAAAGATACAGAGTATTTTGCTACTCAGTTCTTACAAAAAA
TTGTTTCCTATAAAATGATAAATAAATCTTGAAAACTGGGCCAATCGGAT
ACCGGTATCTGGTCACGTGTCNATTATAAAGAAAACACTGTGTCTTTTCT
TCTGTGGGTATGGGAGTCGGGAGTTTAGGGTGTGGGAAGTTACTATGGTT
TAGAGTTAGAGGAGAAATAGTTTTTCCCAGACCCCGACGAACGCGGTTTT
GTAAAATTCCGCTGAATAAACTTTTCAGATCATCATATGCCCTAGCAATG
GTGATAGGTTATGAGATTAGTGCCAGCTGAGATTTCATATTCATACAGCA
CAGGGAGTGATTGGACATTTAAAGGAGATATTCAGAGAAGAATTTCCGGG
GGTCAGGGAAGTTAATAATTTTTCGCAAGAGTTTGATTTAAATTGATTTT
ATTAAAATTCAAAGGAGTACTACCAGAAGATAAATTTCCAAGAGTTTCCA
AGAATCTGAAACCTTTTCCTGGGTGCTAAATGTTATTATAAAATTTTCAG
GGCGTAAATGAAAGGTTCATCTACCCCGCCCCCTGTTTTGTTTTGTTTTG
TTAAAACAACACCCAAACCCCATCAATCAAAGTAATATCAAATAGAAAAA
CCTTCATGATAAATAAACTCAAACCGATTCATGATTTGAACTAGTAAATG
ACTTTAATTCATTATTTAGTAAGATTTACCATGACAGCAAAAATGTTATT
ACAAAATTTTCAGGGCGTAAATGAAAGGTTCATCTACCCCACCCCCTGTT
TTGTTTTTGTTAAAACAACACCCAAACCCCATCAATCAAAGTATAGAAAA
ACCTTCATGATCAATAAAATTCAAATCTGAACTAGTATTGAACTAGTAAA
TGACTTTAATTCATTATTTAGTAGGACTTACCATGACAGCAAAATTGAAT
GAAAATTGTAAAAAAAGGAGAAAAAAATCCCCATCAGAAATTAATTTTAG
TATCAAAAATTTCTAATTTCTAAATGCATAAAGATGGATGCTTCTGTACT
TTGGTTTGGCCTCCTTTTATGTGTTCATTTCTCATTTGGGCAATTTATGC
CATTTCTACCATTCAAACATCTCCATACAAACACTGCTATCGATGGACCT
CAACCATGGTTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTCGATAA
ATGCCTCAAAAACTTCACTCACTGTGAATATGTACAACATAAACAAATGA
CCACTACAACATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTCTGTCA
AATTATTTGGTTTCACAAACCGGAGAAATGCTGGCTCAAGCTGTCCACGA
AAACATTGGCTGTGAAGATTGGAGATCTAGAGGTTATACAAAGTCGGATA
TTTACTGGATTTTCTACAACAGAAATAAGTTCAAAGTATATTGTGGCTTA
GGCGGTCCAGATTCGTGGACATTGATAGACAAACGACAAGATGGTTCGGT
CAGTTTCAATCGTTTATGGCAAGAATACAAAGACGGTTTCGGAGATCTGA
GCGGTGAATTTTATTTGGGTAATGAAAAAATCCATCTCTTAACAAAAGAC
CGTGAAATGATGGTTTATCTGCAACTTTGGGCTTTTGATGGTACGAAGTA
TGCAGTCGGGTTTAAAGGCTTCTTTATCGAAGATGAAGCTAATAAATATA
GGTTACACTCAGGTACATATGATTTCGGTGACCCAAACTTCGGGAGCGAA
TGGACTGACATGAACGGAAGTAAATTTTCAACCCGAGACGACGACAATGA
CAGAGCCACAACAATGCATTGTGGAGATAAATGGAAAACAGGTTGGTGGT
TTACGAATTGTGGAGGTTGTTATCTCCATAATGTTTATTCTGGTGTACCC
GACGTACCGAAACGACACGGAATTACTTGCGGAAGATTGAGAGGTGACTT
TGAAAGCTTCAAAAAACTCGTGATATCTATTCGACCCGTTGGCTAATTAA
TTTTAATTGATTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050820-exon-scaffold_189-1575043694:212327..212779 | TCONS_00050820-exon-scaffold_189-1575043694:212327..212779 | Clytia hemisphaerica | exon |
| TCONS_00050820-exon-scaffold_189-1575043694:207264..207809 | TCONS_00050820-exon-scaffold_189-1575043694:207264..207809 | Clytia hemisphaerica | exon |
| TCONS_00050820-exon-scaffold_189-1510915933:212327..212779 | TCONS_00050820-exon-scaffold_189-1510915933:212327..212779 | Clytia hemisphaerica | exon |
| TCONS_00050820-exon-scaffold_189-1510915933:207264..207809 | TCONS_00050820-exon-scaffold_189-1510915933:207264..207809 | Clytia hemisphaerica | exon |
| TCONS_00050820-exon-scaffold_189-1491911889:212327..212779 | TCONS_00050820-exon-scaffold_189-1491911889:212327..212779 | Clytia hemisphaerica | exon |
| TCONS_00050820-exon-scaffold_189-1491911889:207264..207809 | TCONS_00050820-exon-scaffold_189-1491911889:207264..207809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:207264..212779 - |
Blast
BLAST of TCONS_00050820 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.445e-33 Identity = 84/227 (37.00%), Postives = 122/227 (53.74%), Query Frame = 2
Query: 344 CEDWRSRGHTQSGIYWIFYN--RNKFKVFCNFAG-PDSWTLIDKRQDGSVSFNRLWQEYKDGFGDLSGEFYLGNEKIHLLTKDREMMVYLQLWAFDGTKYAVGFKGFFIEDEANKYRLHSGTYD--FGDPNFGSEWTDMNGSKFSTRDDDNDRATTMHCGDKWKTGWWFTNC-----GGCYLHNVYSGVPDVPKRHGITCGRLRGDFE--------SFKKLVISIRP 970
C D+ + G S Y + + + F+V+C+ WT++ R DGS +F R WQ+YK GFG+L EF+LGN+KIHLLTK +EM++ + L F+G + + F++ +E KYRLH G Y+ GD ++ + + F+T D DNDR + +CG + +GWWF C G Y H Y GV R+GI G G E SFK+ + IRP
Sbjct: 213 CSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGV-----RNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRP 434
The following BLAST results are available for this feature:
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