TCONS_00050822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050822
Unique NameTCONS_00050822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050822 ID=TCONS_00050822|Name=TCONS_00050822|organism=Clytia hemisphaerica|type=transcript|length=1610bp
TTTAGATCATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCT
TGATATTCTATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTAC
CATTCAAACACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGG
TTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAA
AAACTTCactcattgtgaatatgtacaACATAAACAAATGACCACAACAA
CATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTG
GTTTCACAAACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGG
CTGTGAAGATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGA
TTTTCTACAACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCA
GATTCGTGGACATTGATAGACAAACGACAAGATGGTTCGGTCAGTTTCAA
TCGTTTATGGCAAGAATACAAAGACGGTTTCGGAGATCTGAGCGGTGAAT
TTTATTTGGGTAATGAAAAAATCCATCTCTTAACAAAAGACCGTGAAATG
ATGGTTTATCTGCAACTTTGGGCTTTTGATGGTACAAAGTATGCAGTCGG
GCTTAAAGGCTTCTTTATCGAAGATGAAGCTAATAAATATAGGTTATGCT
CAGGTACATATGATTTCGGTGACCCAAACTTCGGGAGCGAATGGACTGGC
ATAAGTGGAAGTAAATTTTCAACCCGAGACGATGACAATGACATAACCAC
AAATATCCATTGTGGAGATAAATGGAAAACAGGCTGGTGGTTTAAGAGTT
GTGGAGGTTGTTATCTCCATAATGTTTATTCCAGTGTACCCGACGTACCG
AAACGACACGGAATTACTTGCGGAAGATTGAGAGGTGACtttgaaagctt
caaaaaactCGTGATATCTATTCGACCCGTTGGCTAATTTTAATTGATCT
ATTTTTACGCCAATATTCAATCAATAAGATTTAATCGATATAAAAAAGCA
GTGAGTTTTAACTtccttattggtattatatttggtgtgtattaaatttc
gcgattgccagtttctggaaattttcgcgtgtattaaatttcgcaattCA
TTAAATTATGCATCTTCAAAAATTGTAATCGTTATAGTAATCATCTTGTG
GATTAACTGTTTGTGATTGCACGTTTTCTTCAATTCAAGTctatgtacag
ggtgtccctaattaaagtatcgagtcgaaacacaactatgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctccttcttttttct
ttgtcattacgattaatttatacgttgtaactaccttttgtaataagcct
gtgtgatggagaacgttcttatattttagcgataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattagggacaccctgta
gttcAAAATCGATGTTTATTCCAGTGTatgaatgtaaacattgcactAAC
CACTTGTcgttaaagagaacaattaaaatcacgtgtccaaaacaaacttg
taaaacaatt
Run BLAST on NCBI

transcript from alignment at scaffold_189:211085..212787-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050822 ID=TCONS_00050822|Name=TCONS_00050822|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_189:211085..212787- (Clytia hemisphaerica)
TTTAGATCATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCT TGATATTCTATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTAC CATTCAAACACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGG TTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAA AAACTTCACTCATTGTGAATATGTACAACATAAACAAATGACCACAACAA CATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTG GTTTCACAAACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGG CTGTGAAGATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGA TTTTCTACAACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCA GATTCGTGGACATTGATAGACAAACGTNCGGGTATTTACTGGATTTTCTA CAACAGAAATAAGTTCAAAGTATATTGTGGCTTAGGCGGTCCAGATTCGT GGACATTGATAGACAAACGACAAGATGGTTCGGTCAGTTTCAATCGTTTA TGGCAAGAATACAAAGACGGTTTCGGAGATCTGAGCGGTGAATTTTATTT GGGTAATGAAAAAATCCATCTCTTAACAAAAGACCGTGAAATGATGGTTT ATCTGCAACTTTGGGCTTTTGATGGTACAAAGTATGCAGTCGGGCTTAAA GGCTTCTTTATCGAAGATGAAGCTAATAAATATAGGTTATGCTCAGGTAC ATATGATTTCGGTGACCCAAACTTCGGGAGCGAATGGACTGGCATAAGTG GAAGTAAATTTTCAACCCGAGACGATGACAATGACATAACCACAAATATC CATTGTGGAGATAAATGGAAAACAGGCTGGTGGTTTAAGAGTTGTGGAGG TTGTTATCTCCATAATGTTTATTCCAGTGTACCCGACGTACCGAAACGAC ACGGAATTACTTGCGGAAGATTGAGAGGTGACTTTGAAAGCTTCAAAAAA CTCGTGATATCTATTCGACCCGTTGGCTAATTTTAATTGATCTATTTTTA CGCCAATATTCAATCAATAAGATTTAATCGATATAAAAAAGCAGTGAGTT TTAACTTCCTTATTGGTATTATATTTGGTGTGTATTAAATTTCGCGATTG CCAGTTTCTGGAAATTTTCGCGTGTATTAAATTTCGCAATTCATTAAATT ATGCATCTTCAAAAATTGTAATCGTTATAGTAATCATCTTGTGGATTAAC TGTTTGTGATTGCACGTTTTCTTCAATTCAAGTCTATGTACAGGGTGTCC CTAATTAAAGTATCGAGTCGAAACACAACTATGAGTAGAAAGTTTTATGT GCGTGTTCACAAAATTGTATTTTAAGCTCTCCTTCTTTTTTCTTTGTCAT TACGATTAATTTATACGTTGTAACTACCTTTTGTAATAAGCCTGTGTGAT GGAGAACGTTCTTATATTTTAGCGATAACACACACAAACTTTTCTACTCA ATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGTAGTTCAAA ATCGATGTTTATTCCAGTGTATGAATGTAAACATTGCACTAACCACTTGT CGTTAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACA ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032196XLOC_032196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050822-exon-scaffold_189-1575043694:212327..212787TCONS_00050822-exon-scaffold_189-1575043694:212327..212787Clytia hemisphaericaexon
TCONS_00050822-exon-scaffold_189-1575043694:211085..212233TCONS_00050822-exon-scaffold_189-1575043694:211085..212233Clytia hemisphaericaexon
TCONS_00050822-exon-scaffold_189-1510915933:212327..212787TCONS_00050822-exon-scaffold_189-1510915933:212327..212787Clytia hemisphaericaexon
TCONS_00050822-exon-scaffold_189-1510915933:211085..212233TCONS_00050822-exon-scaffold_189-1510915933:211085..212233Clytia hemisphaericaexon
TCONS_00050822-exon-scaffold_189-1491911889:212327..212787TCONS_00050822-exon-scaffold_189-1491911889:212327..212787Clytia hemisphaericaexon
TCONS_00050822-exon-scaffold_189-1491911889:211085..212233TCONS_00050822-exon-scaffold_189-1491911889:211085..212233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:211085..212787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151798 0.0872365 0.284443 0.267132 0.518473 0.373767 0.746899 0.48946 0.28995 0.357699 0.465411 0.291622 1.81698 1.74747 0.319039 0.364964 0.416724 0.488424 2.71994 1.76411 1.13098 0.842657 0.188671 0.830885 1.291 1.39078 0.46274 0.354889 0.810157 0.649531
Blast
BLAST of TCONS_00050822 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.480e-25
Identity = 81/227 (35.68%), Postives = 117/227 (51.54%), Query Frame = 1
Query:  352 CEDWRSRGHTQSGIYWIFYN--RNKFKVFCNFAG-PDSWTLIDKRQDGSVSFNRLWQEYKDGFGDLSGEFYLGNEKIHLLTKDREMMVYLQLWAFDGTKYAVGLKGFFIEDEANKYRLCSGTYD--FGDPNFGSEWTGISGSKFSTRXXXXXXXXXXHCGDKWKTGWWFKSC-----GGCYLHNVYSSVPDVPKRHGITCGRLRGDFE--------SFKKLVISIRP 978
            C D+ + G   S  Y +  +   + F+V+C+       WT++  R DGS +F R WQ+YK GFG+L  EF+LGN+KIHLLTK +EM++ + L  F+G +       F++ +E  KYRL  G Y+   GD    ++        F+T D DND   + +CG  + +GWWF +C      G Y H  Y  V     R+GI  G   G  E        SFK+  + IRP
Sbjct:  213 CSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGV-----RNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRP 434          
The following BLAST results are available for this feature:
BLAST of TCONS_00050822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL23.480e-2535.68Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
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