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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050822 ID=TCONS_00050822|Name=TCONS_00050822|organism=Clytia hemisphaerica|type=transcript|length=1610bp
TTTAGATCATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCT
TGATATTCTATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTAC
CATTCAAACACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGG
TTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAA
AAACTTCactcattgtgaatatgtacaACATAAACAAATGACCACAACAA
CATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTG
GTTTCACAAACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGG
CTGTGAAGATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGA
TTTTCTACAACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCA
GATTCGTGGACATTGATAGACAAACGACAAGATGGTTCGGTCAGTTTCAA
TCGTTTATGGCAAGAATACAAAGACGGTTTCGGAGATCTGAGCGGTGAAT
TTTATTTGGGTAATGAAAAAATCCATCTCTTAACAAAAGACCGTGAAATG
ATGGTTTATCTGCAACTTTGGGCTTTTGATGGTACAAAGTATGCAGTCGG
GCTTAAAGGCTTCTTTATCGAAGATGAAGCTAATAAATATAGGTTATGCT
CAGGTACATATGATTTCGGTGACCCAAACTTCGGGAGCGAATGGACTGGC
ATAAGTGGAAGTAAATTTTCAACCCGAGACGATGACAATGACATAACCAC
AAATATCCATTGTGGAGATAAATGGAAAACAGGCTGGTGGTTTAAGAGTT
GTGGAGGTTGTTATCTCCATAATGTTTATTCCAGTGTACCCGACGTACCG
AAACGACACGGAATTACTTGCGGAAGATTGAGAGGTGACtttgaaagctt
caaaaaactCGTGATATCTATTCGACCCGTTGGCTAATTTTAATTGATCT
ATTTTTACGCCAATATTCAATCAATAAGATTTAATCGATATAAAAAAGCA
GTGAGTTTTAACTtccttattggtattatatttggtgtgtattaaatttc
gcgattgccagtttctggaaattttcgcgtgtattaaatttcgcaattCA
TTAAATTATGCATCTTCAAAAATTGTAATCGTTATAGTAATCATCTTGTG
GATTAACTGTTTGTGATTGCACGTTTTCTTCAATTCAAGTctatgtacag
ggtgtccctaattaaagtatcgagtcgaaacacaactatgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctccttcttttttct
ttgtcattacgattaatttatacgttgtaactaccttttgtaataagcct
gtgtgatggagaacgttcttatattttagcgataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattagggacaccctgta
gttcAAAATCGATGTTTATTCCAGTGTatgaatgtaaacattgcactAAC
CACTTGTcgttaaagagaacaattaaaatcacgtgtccaaaacaaacttg
taaaacaatt Run BLAST on NCBI transcript from alignment at scaffold_189:211085..212787- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050822 ID=TCONS_00050822|Name=TCONS_00050822|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_189:211085..212787- (Clytia hemisphaerica)
TTTAGATCATTTATTATCGTCAGAAAAATGGTGGGATTGGCAATTTTTCT
TGATATTCTATGTCTTCACTTGTCTTTTGGACAATTTATGCCATTTCTAC
CATTCAAACACCTCCATACAAACACTGCTATCGATGGTCCCCAACCATGG
TTTGACGGAGAAGTAGCTTCCAAGGATCATTGCTTCGATAAATGCCTCAA
AAACTTCACTCATTGTGAATATGTACAACATAAACAAATGACCACAACAA
CATGGCTTTGCAGGCTTTTCAATGTCATCTCTGGTCTGTCAAATTATTTG
GTTTCACAAACCGGAGAAATGTTGGCTCAAGCTGTCCACGAAAATATTGG
CTGTGAAGATTGGAGATCTAGAGGACACACACAGTCGGGTATTTACTGGA
TTTTCTACAACAGAAATAAGTTCAAAGTATTTTGCAACTTTGCTGGTCCA
GATTCGTGGACATTGATAGACAAACGTNCGGGTATTTACTGGATTTTCTA
CAACAGAAATAAGTTCAAAGTATATTGTGGCTTAGGCGGTCCAGATTCGT
GGACATTGATAGACAAACGACAAGATGGTTCGGTCAGTTTCAATCGTTTA
TGGCAAGAATACAAAGACGGTTTCGGAGATCTGAGCGGTGAATTTTATTT
GGGTAATGAAAAAATCCATCTCTTAACAAAAGACCGTGAAATGATGGTTT
ATCTGCAACTTTGGGCTTTTGATGGTACAAAGTATGCAGTCGGGCTTAAA
GGCTTCTTTATCGAAGATGAAGCTAATAAATATAGGTTATGCTCAGGTAC
ATATGATTTCGGTGACCCAAACTTCGGGAGCGAATGGACTGGCATAAGTG
GAAGTAAATTTTCAACCCGAGACGATGACAATGACATAACCACAAATATC
CATTGTGGAGATAAATGGAAAACAGGCTGGTGGTTTAAGAGTTGTGGAGG
TTGTTATCTCCATAATGTTTATTCCAGTGTACCCGACGTACCGAAACGAC
ACGGAATTACTTGCGGAAGATTGAGAGGTGACTTTGAAAGCTTCAAAAAA
CTCGTGATATCTATTCGACCCGTTGGCTAATTTTAATTGATCTATTTTTA
CGCCAATATTCAATCAATAAGATTTAATCGATATAAAAAAGCAGTGAGTT
TTAACTTCCTTATTGGTATTATATTTGGTGTGTATTAAATTTCGCGATTG
CCAGTTTCTGGAAATTTTCGCGTGTATTAAATTTCGCAATTCATTAAATT
ATGCATCTTCAAAAATTGTAATCGTTATAGTAATCATCTTGTGGATTAAC
TGTTTGTGATTGCACGTTTTCTTCAATTCAAGTCTATGTACAGGGTGTCC
CTAATTAAAGTATCGAGTCGAAACACAACTATGAGTAGAAAGTTTTATGT
GCGTGTTCACAAAATTGTATTTTAAGCTCTCCTTCTTTTTTCTTTGTCAT
TACGATTAATTTATACGTTGTAACTACCTTTTGTAATAAGCCTGTGTGAT
GGAGAACGTTCTTATATTTTAGCGATAACACACACAAACTTTTCTACTCA
ATCGCATGTTCAAACTCGATACTTTAATTAGGGACACCCTGTAGTTCAAA
ATCGATGTTTATTCCAGTGTATGAATGTAAACATTGCACTAACCACTTGT
CGTTAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACA
ATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050822-exon-scaffold_189-1575043694:212327..212787 | TCONS_00050822-exon-scaffold_189-1575043694:212327..212787 | Clytia hemisphaerica | exon |
| TCONS_00050822-exon-scaffold_189-1575043694:211085..212233 | TCONS_00050822-exon-scaffold_189-1575043694:211085..212233 | Clytia hemisphaerica | exon |
| TCONS_00050822-exon-scaffold_189-1510915933:212327..212787 | TCONS_00050822-exon-scaffold_189-1510915933:212327..212787 | Clytia hemisphaerica | exon |
| TCONS_00050822-exon-scaffold_189-1510915933:211085..212233 | TCONS_00050822-exon-scaffold_189-1510915933:211085..212233 | Clytia hemisphaerica | exon |
| TCONS_00050822-exon-scaffold_189-1491911889:212327..212787 | TCONS_00050822-exon-scaffold_189-1491911889:212327..212787 | Clytia hemisphaerica | exon |
| TCONS_00050822-exon-scaffold_189-1491911889:211085..212233 | TCONS_00050822-exon-scaffold_189-1491911889:211085..212233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:211085..212787 - |
Blast
BLAST of TCONS_00050822 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.480e-25 Identity = 81/227 (35.68%), Postives = 117/227 (51.54%), Query Frame = 1
Query: 352 CEDWRSRGHTQSGIYWIFYN--RNKFKVFCNFAG-PDSWTLIDKRQDGSVSFNRLWQEYKDGFGDLSGEFYLGNEKIHLLTKDREMMVYLQLWAFDGTKYAVGLKGFFIEDEANKYRLCSGTYD--FGDPNFGSEWTGISGSKFSTRXXXXXXXXXXHCGDKWKTGWWFKSC-----GGCYLHNVYSSVPDVPKRHGITCGRLRGDFE--------SFKKLVISIRP 978
C D+ + G S Y + + + F+V+C+ WT++ R DGS +F R WQ+YK GFG+L EF+LGN+KIHLLTK +EM++ + L F+G + F++ +E KYRL G Y+ GD ++ F+T D DND + +CG + +GWWF +C G Y H Y V R+GI G G E SFK+ + IRP
Sbjct: 213 CSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGV-----RNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRP 434
The following BLAST results are available for this feature:
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