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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050824 ID=TCONS_00050824|Name=TCONS_00050824|organism=Clytia hemisphaerica|type=transcript|length=2124bp
NNTGTCAAATTTACCAGTCGCGCTAGGGTCttagcgggtctgtgacacag
ggacaCCTtaatgaaaacaattaaaaattatGTACAATCATAACATTTTT
GGGATACCGTCAGCTTGATAACATTAAATATTCACAATTTGTAAATCAAC
ATATTACAATAATTCGTCGGTCACATGACTTAAGGTACAATCTCAGAATA
AGTTACTTGGTATATTGAAAACCTTGCCCCCCTACAGTACTTTAATAGGA
TATATTTTCGTGGAGATTTTCGGGAATTTCACAGATTtaggtgtcatccg
cgaaaataagtctcAAAGGAAATTTGGAAAAGGCCGATTcgagaatattt
tttgaacaaaagtggaaaaatgtcaaataactaCTTTTATTAAAATGTTA
ACTGGCATCAAAATAGCGCTAACAATGCATATTCTAACGACCAATCAGTA
TAATTTGGCAAATAAATAGacacaaaatcataaaaatattgTCTCTTGAT
AAGATCATCGATGATAAGAGACCATAAGACCctccgcgaaatcttaaaat
ttcgcggatgagctcaaatGGGAAATTTAATCCCCATGAAAATTTATCCC
TTTTGAAGTATTTTGTTCGTGTGATTAAACTTTTTATCCGGAGAGAGGAT
CACTTAAAAGTAAATaacctaccgtacgtgcggaTCTTAAGAATCCTTTT
TCCAAGTTTccaaaagtgcactgtaagggtcgaaagtACACTCTAAGGtg
tgaaatttggaaaatctgaccattttttgccttaaaatggtCAAATCCTT
AAGAAAGTGAACCCCTTTCGCCCCAAGTTTACtcaaattttgctaaattt
tccctACGCTGAAAGGTTATTGATCGCAAATAGTCACACAAGAACTATTT
GATTTTGTAAAGCATTTTTAGATTAAATTATAAGATTATAAGattataag
aaaatattataattATAAGAAAGGTCCTTGTGATGAAGCACATTGGCTAA
AGTTGACTTTTAATATCgtgtaaataatttttgaaaactaatttCCTTGC
TTCAATTGCTTTGGTGAAACATTTCATGTTTGGCATATGAGAATTACCAT
GTTTCCCACCAGGGATCACAAACTGATCCAGCAACCTTCCAGCACGTCTT
AAACGATTCGCCAGGCGGGTTGCTTCAGTGATATACATATCAAATTCGAC
TGTATCAAGCACAGTAGGTACAAATTTCTGCAACAACTCATCTGAGGCTT
TCCCAGGGAATAGCAAGGGATCAGACTTCTGTTTCTCCCAATCATCAGCA
ATTAAATGTTTCCATATTTTCCTCATCATTGGTGCAGATTCGCGTTCCTC
TTTCGTCATTGGTTCCACGTCTGCAAAACTATAATCATCCACCATTGGGA
TACTGACAATCGCCATCCTGACCAGGGCTGATTCTTCACGTTGTGCCAAC
AAAACCATTGCACCCAAACAAATATATCCACCTCCACTCTCTCCTCCAAT
GGCAATCCTCCTTGCATCAATTCCCAATTCGTCAGCATTCTTGACAACGT
ATTTGATAGCCTCATAAAAGTCCTTTACATTGTTAGGGCACTTGGTTTCA
GGGGCCAGTCGATAATCAACATTGAACACAACTACATCCAACTCGTCAGC
GAAGTACGCTAATGCTGGTTTAAAAGTAGCAGCATCTAAAGCAAAACCGC
CACCACCGTGGGCGTAAATATAAGCTGCCCTCTTGACgcttttatcttca
aatttcttTGGTGTGTATTGAAAGACAGGGACTTCGAAATCTCCAcagtg
attggttgaaactttGAGAATCGTTTCATCGACATTCTGATTAGCAGTGG
TATAGGGTTCTTGATTCGCACTTGCTTTAACCATCATATCAAACAACCCT
CTAAACATAACAACAAATTCTTTGTTAGTTTCCTCGTCATTCACAGCGAA
CAATTTTTGCATGTGTTCTGATTGTTTTGGGTCGATAGATTGTGATATTT
GTTGAGTCTTTGTATCATGAGCTGCTACATCATCGTCGTAAAATCCTTGT
AGTTGGAAATTGAACAAGTTCTTTGACTTGACGCGACCTCctgacatttt
ttttgttttatctttCTATACTAA Run BLAST on NCBI transcript from alignment at scaffold_189:288534..290719- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050824 ID=TCONS_00050824|Name=TCONS_00050824|organism=Clytia hemisphaerica|type=transcript|length=2186bp|location=Sequence derived from alignment at scaffold_189:288534..290719- (Clytia hemisphaerica)
NNTGTCAAATTTACCAGTCGCGCTAGGGTCTTAGCGGGTCTGTGACACAG
GGACACCTTAATGAAAACAATTAAAAATTATGTACAATCATAACATTTTT
GGGATACCGTCAGCTTGATAACATTAAATATTCACAATTTGTAAATCAAC
ATATTACAATAATTCGTCGGTCACATGACTTAAGGTACAATCTCAGAATA
AGTTACTTGGTATATTGAAAACCTTGCCCCCCTACAGTACTTTAATAGGA
TATATTTTCGTGGAGATTTTCGGGAATTTCACAGATTTAGGTGTCATCCG
CGAAAATAAGTCTCAAAGGAAATTTGGAAAAGGCCGATTCGAGAATATTT
TTTGAACAAAAGTGGAAAAATGTCAAATAACTACTTTTATTAAAATGTTA
ACTGGCATCAAAATAGCGCTAACAATGCATATTCTAACGACCAATCAGTA
TAATTTGGCAAATAAATAGACACAAAATCATAAAAATATTGTCTCTTGAT
AAGATCATCGATGATAAGAGACCATAAGACCCTCCGCGAAATCTTAAAAT
TTCGCGGATGAGCTCAAATGGGAAATTTAATCCCCATGAAAATTTATCCC
TTTTGAAGTATTTTGTTCGTGTGATTAAACTTTTTATCCGGAGAGAGGAT
CACTTAAAAGTAAATAACCTACCGTACGTGCGGATCTTAAGAATCCTTTT
TCCAAGTTTCCAAAAGTGCACTGTAAGGGTCGAAAGTACACTCTAAGGTG
TGAAATTTGGAAAATCTGACCATTTTTTGCCTTAAAATGGTCAAATCCTT
AAGAAAGTGAACCCCTTTCGCCCCAAGTTTACTCAAATTTTGCTAAATTT
TCCCTACGCTGAAAGGTTATTGATCGCAAATAGTCACACAAGAACTATTT
GATTTTGTAAAGCATTTTTAGATTAAATTATAAGATTATAAGATTATAAG
AAAATATTATAATTATAAGAAAGGTCCTTGTGATGAAGCACATTGGCTAA
AGTTGACTTTTAATATCGTGTAAATAATTTTTGAAAACTAATTTCCTTGC
TTCAATTGCTTTGGTGAAACATTTCATGTTTGGCATATGAGAATTACCAT
GTTTCCCACCAGGGATCACAAACTGATCCAGCAACCTTCCAGCACGTCTT
AAACGATTCGCCAGGCGGGTTGCTTCAGTGATATACATATCAAATTCGAC
TGTATCAAGCACAGTAGGTACAAATTTCTGCAACAACTCATCTGAGGCTT
TCCCAGGGAATAGCAAGGGATCAGACTTCTGTTTCTCCCAATCATCAGCA
ATTAAATGTTTCCATATTTTCCTCATCATTGGTGCAGATTCGCGTTCCTC
TTTCGTCATTGGTTCCACGTCTGCAAAACTATAATCATCCACCATTGGGA
TACTGACAATCGCCATCCTGACCAGGGCTGATTCTTCACGTTGTGCCAAC
AAAACCATTGCACCCAAACAAATATATCCACCTCCACTCTCTCCTCCAAT
GGCAATCCTCCTTGCATCAATTCCCAATTCGTCAGCATTCTTGACAACGT
ATTTGATAGCCTCATAAAAGTCCTTTACATTGTTAGGGCACTTGGTTTCA
GGGGCCAGTCGATAATCAACATTGAAGACAACTACATCCAACTCGNAGGG
CACTTGGTTTCAGGGGCCAGTCGATAATCAACATTGAACACAACTACATC
CAACTCGTCAGCGAAGTACGCTAATGCTGGTTTAAAAGTAGCAGCATCTA
AAGCAAAACCGCCACCACCGTGGGCGTAAATATAAGCTGCCCTCTTGACG
CTTTTATCTTCAAATTTCTTTGGTGTGTATTGAAAGACAGGGACTTCGAA
ATCTCCACAGTGATTGGTTGAAACTTTGAGAATCGTTTCATCGACATTCT
GATTAGCAGTGGTATAGGGTTCTTGATTCGCACTTGCTTTAACCATCATA
TCAAACAACCCTCTAAACATAACAACAAATTCTTTGTTAGTTTCCTCGTC
ATTCACAGCGAACAATTTTTGCATGTGTTCTGATTGTTTTGGGTCGATAG
ATTGTGATATTTGTTGAGTCTTTGTATCATGAGCTGCTACATCATCGTCG
TAAAATCCTTGTAGTTGGAAATTGAACAAGTTCTTTGACTTGACGCGACC
TCCTGACATTTTTTTTGTTTTATCTTTCTATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050824-exon-scaffold_189-1575043694:289100..290719 | TCONS_00050824-exon-scaffold_189-1575043694:289100..290719 | Clytia hemisphaerica | exon |
| TCONS_00050824-exon-scaffold_189-1575043694:288534..289037 | TCONS_00050824-exon-scaffold_189-1575043694:288534..289037 | Clytia hemisphaerica | exon |
| TCONS_00050824-exon-scaffold_189-1510915933:289100..290719 | TCONS_00050824-exon-scaffold_189-1510915933:289100..290719 | Clytia hemisphaerica | exon |
| TCONS_00050824-exon-scaffold_189-1510915933:288534..289037 | TCONS_00050824-exon-scaffold_189-1510915933:288534..289037 | Clytia hemisphaerica | exon |
| TCONS_00050824-exon-scaffold_189-1491911889:289100..290719 | TCONS_00050824-exon-scaffold_189-1491911889:289100..290719 | Clytia hemisphaerica | exon |
| TCONS_00050824-exon-scaffold_189-1491911889:288534..289037 | TCONS_00050824-exon-scaffold_189-1491911889:288534..289037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:288534..290719 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016787 |
hydrolase activity |
Blast
The following BLAST results are available for this feature:
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