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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050833 ID=TCONS_00050833|Name=TCONS_00050833|organism=Clytia hemisphaerica|type=transcript|length=1425bp
CTGCCCTGCCAGTCCCAATTTTTGACCTTGCGCCATGCCCCTATAACTTA
ATAATTTGTGCCATGTCCTGATACACGATTCTGCACGAGCTCATGTTTCA
TTTTTTGGCTAGACCCCCATTAGGTACATAGTTTACTGTTTTCTCATTGA
TAAGGTATCACCTCTCTCTTTTCTCTTTCCTCTTAATACCTTTTTCTCTC
TGTTTTTACCCCCCCTCCTTTTGTTATGCCTATAAGAAACAAGAAAGGTA
AGAAACAACGTAACATAAAAAACCCCTGTGGAATTTGTAGTAACCCtgta
gcaaaaaatcataatgctGTATGGTGTGACCTTTGCAACCTTTGGATTCA
CATCAAATGCAACAACACGTCTCTGGATGTCTANTGACCTTTGCAAATTT
TGGATTCACATCAAATGCAACAAAACGTCTCTGGATGTCTACCACCGACt
tcaaaatgatgaaaactcATGGTTCTGCCACAAATGCTACAATCATGCAG
TACCATTTGGAGACATATCCCATGAAGACCTAAAACTCACCCTACAAGGT
aagaattttgatttctttctcgATCCTCTTAATGATATTAATGTGCAATT
CTACAGAGATATAGATGAGGCTCTTGACAGCGGTGAGACACAAGAATTGG
GTTGTCCTTATTTGGCCTTGAGTGAGGTTAATGAAAAGTACGACAAAAAC
AATCCCTGCTTAGCTTCAATGCACCTCAATATAGCATCACTTAACTTACA
TTTTGATGACCTCACAACTTTACTGGGTAGCTGTTCCCTTCCTTTTAACT
TCATTGGAATCACTGAAACAGGCTTCAAAGACTTGAACAAAGCCAAAAAC
TCTTCTAGCTTGATCAATTACAATCACTTTGACTGCTGTACTGTGTCTAA
CCGAGGTGGAGCCAGAATCTATATCTCTGCAGGATTTGACTCAACCCCAA
GAGACGATCTGGTCCTTTATCAAGAAAATGAGATTGAGTCAGTGGTCCGG
GAGATTGTGTATGAAAATGACAATAACTTTATAGTTGCATGTATATACAA
ACATCCAAATGCTGACTCTGAAAATTTCCTTTCTCTCTACTCAAATCTTC
TCGACAAAataatttcagaaaataaaaaagcaattaTCATGGGAGATTTC
AACTTTGATTTACTGATGGCTGATTCAAAACAGCCCACTGATGAGTTTCT
CACTACAAATTTAACTCACTGTTTCATTCCAACCATTACCAGGCCTACCA
GAATAACTCCTCATTCAAAAACTTTGATAGATAACATTTTTACGAACTTC
ATCACAGCAAAACCACAGGCATGCAATCTCATATGCAGTATCTCGGACCA
TCTGCCTCAGTTACTTAAATTGGATCTGAAACCATCTAAGTCTCTTCAAG
TCAAATCGTCTAAGAGAGATTTCAG Run BLAST on NCBI protein sequence of TCONS_00050833-protein >TCONS_00050833-protein ID=TCONS_00050833-protein|Name=TCONS_00050833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MLYGVTFATFGFTSNATTRLWMSXDLCKFWIHIKCNKTSLDVYHRLQNDE
NSWFCHKCYNHAVPFGDISHEDLKLTLQGKNFDFFLDPLNDINVQFYRDI
DEALDSGETQELGCPYLALSEVNEKYDKNNPCLASMHLNIASLNLHFDDL
TTLLGSCSLPFNFIGITETGFKDLNKAKNSSSLINYNHFDCCTVSNRGGA
RIYISAGFDSTPRDDLVLYQENEIESVVREIVYENDNNFIVACIYKHPNA
DSENFLSLYSNLLDKIISENKKAIIMGDFNFDLLMADSKQPTDEFLTTNL
THCFIPTITRPTRITPHSKTLIDNIFTNFITAKPQACNLICSISDHLPQL
LKLDLKPSKSLQVKSSKRDF Run BLAST on NCBI transcript from alignment at scaffold_189:36950..38374 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050833 ID=TCONS_00050833|Name=TCONS_00050833|organism=Clytia hemisphaerica|type=transcript|length=1425bp|location=Sequence derived from alignment at scaffold_189:36950..38374 (Clytia hemisphaerica)
CTGAAATCTCTCTTAGACGATTTGACTTGAAGAGACTTAGATGGTTTCAG
ATCCAATTTAAGTAACTGAGGCAGATGGTCCGAGATACTGCATATGAGAT
TGCATGCCTGTGGTTTTGCTGTGATGAAGTTCGTAAAAATGTTATCTATC
AAAGTTTTTGAATGAGGAGTTATTCTGGTAGGCCTGGTAATGGTTGGAAT
GAAACAGTGAGTTAAATTTGTAGTGAGAAACTCATCAGTGGGCTGTTTTG
AATCAGCCATCAGTAAATCAAAGTTGAAATCTCCCATGAtaattgctttt
ttattttctgaaattatTTTGTCGAGAAGATTTGAGTAGAGAGAAAGGAA
ATTTTCAGAGTCAGCATTTGGATGTTTGTATATACATGCAACTATAAAGT
TATTGTCATTTTCATACACAATCTCCCGGACCACTGACTCAATCTCATTT
TCTTGATAAAGGACCAGATCGTCTCTTGGGGTTGAGTCAAATCCTGCAGA
GATATAGATTCTGGCTCCACCTCGGTTAGACACAGTACAGCAGTCAAAGT
GATTGTAATTGATCAAGCTAGAAGAGTTTTTGGCTTTGTTCAAGTCTTTG
AAGCCTGTTTCAGTGATTCCAATGAAGTTAAAAGGAAGGGAACAGCTACC
CAGTAAAGTTGTGAGGTCATCAAAATGTAAGTTAAGTGATGCTATATTGA
GGTGCATTGAAGCTAAGCAGGGATTGTTTTTGTCGTACTTTTCATTAACC
TCACTCAAGGCCAAATAAGGACAACCCAATTCTTGTGTCTCACCGCTGTC
AAGAGCCTCATCTATATCTCTGTAGAATTGCACATTAATATCATTAAGAG
GATcgagaaagaaatcaaaattcttACCTTGTAGGGTGAGTTTTAGGTCT
TCATGGGATATGTCTCCAAATGGTACTGCATGATTGTAGCATTTGTGGCA
GAACCATgagttttcatcattttgaaGTCGGTGGTAGACATCCAGAGACG
TTTTGTTGCATTTGATGTGAATCCAAAATTTGCAAAGGTCANTAGACATC
CAGAGACGTGTTGTTGCATTTGATGTGAATCCAAAGGTTGCAAAGGTCAC
ACCATACagcattatgattttttgctacaGGGTTACTACAAATTCCACAG
GGGTTTTTTATGTTACGTTGTTTCTTACCTTTCTTGTTTCTTATAGGCAT
AACAAAAGGAGGGGGGGTAAAAACAGAGAGAAAAAGGTATTAAGAGGAAA
GAGAAAAGAGAGAGGTGATACCTTATCAATGAGAAAACAGTAAACTATGT
ACCTAATGGGGGTCTAGCCAAAAAATGAAACATGAGCTCGTGCAGAATCG
TGTATCAGGACATGGCACAAATTATTAAGTTATAGGGGCATGGCGCAAGG
TCAAAAATTGGGACTGGCAGGGCAG Coding sequence (CDS) from alignment at scaffold_189:36950..38374 >TCONS_00050833 ID=TCONS_00050833|Name=TCONS_00050833|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_189:36950..38374 (Clytia hemisphaerica)
GAAATCTCTCTTAGACGATTTGACTTGAAGAGACTTAGATGGTTTCAGAT
CCAATTTAAGTAACTGAGGCAGATGGTCCGAGATACTGCATATGAGATTG
CATGCCTGTGGTTTTGCTGTGATGAAGTTCGTAAAAATGTTATCTATCAA
AGTTTTTGAATGAGGAGTTATTCTGGTAGGCCTGGTAATGGTTGGAATGA
AACAGTGAGTTAAATTTGTAGTGAGAAACTCATCAGTGGGCTGTTTTGAA
TCAGCCATCAGTAAATCAAAGTTGAAATCTCCCATGAtaattgctttttt
attttctgaaattatTTTGTCGAGAAGATTTGAGTAGAGAGAAAGGAAAT
TTTCAGAGTCAGCATTTGGATGTTTGTATATACATGCAACTATAAAGTTA
TTGTCATTTTCATACACAATCTCCCGGACCACTGACTCAATCTCATTTTC
TTGATAAAGGACCAGATCGTCTCTTGGGGTTGAGTCAAATCCTGCAGAGA
TATAGATTCTGGCTCCACCTCGGTTAGACACAGTACAGCAGTCAAAGTGA
TTGTAATTGATCAAGCTAGAAGAGTTTTTGGCTTTGTTCAAGTCTTTGAA
GCCTGTTTCAGTGATTCCAATGAAGTTAAAAGGAAGGGAACAGCTACCCA
GTAAAGTTGTGAGGTCATCAAAATGTAAGTTAAGTGATGCTATATTGAGG
TGCATTGAAGCTAAGCAGGGATTGTTTTTGTCGTACTTTTCATTAACCTC
ACTCAAGGCCAAATAAGGACAACCCAATTCTTGTGTCTCACCGCTGTCAA
GAGCCTCATCTATATCTCTGTAGAATTGCACATTAATATCATTAAGAGGA
TcgagaaagaaatcaaaattcttACCTTGTAGGGTGAGTTTTAGGTCTTC
ATGGGATATGTCTCCAAATGGTACTGCATGATTGTAGCATTTGTGGCAGA
ACCATgagttttcatcattttgaaGTCGGTGGTAGACATCCAGAGACGTT
TTGTTGCATTTGATGTGAATCCAAAATTTGCAAAGGTCANTAGACATCCA
GAGACGTGTTGTTGCATTTGATGTGAATCCAAAGGTTGCAAAGGTCACAC
CATACagcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050833-exon-scaffold_189-1491911889:36950..38374 | TCONS_00050833-exon-scaffold_189-1491911889:36950..38374 | Clytia hemisphaerica | exon |
| TCONS_00050833-exon-scaffold_189-1510915933:36950..38374 | TCONS_00050833-exon-scaffold_189-1510915933:36950..38374 | Clytia hemisphaerica | exon |
| TCONS_00050833-exon-scaffold_189-1575043694:36950..38374 | TCONS_00050833-exon-scaffold_189-1575043694:36950..38374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:36950..38374 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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