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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050836 ID=TCONS_00050836|Name=TCONS_00050836|organism=Clytia hemisphaerica|type=transcript|length=971bp
tCCTATCCCAGATAATCCAAAAATTAGATCCTACTTCCGAAAAACATCCA
CAGACCTTAcccgttttttgaaaaaactcaacAAGAGACCAACAACAAAA
AACTTAACACATCATGAATATAAAGCACTAAAAAGACTGAGTACCAATAA
ATCAATTGTTATTAAAAAAGCCGACAAAGGCGGCTCTATTGTAATCCTTG
ACAAGGAGGATTACAAACAAAAAGTATTTGATCATCTGACTGATACAACT
TCTTACGGAATGACGGAAGTTAATCCTTTAAAAGATATCCAAACAAATTT
AACTGCCTTCCTGGAAACTATACTTTACCATTACCACATAAACGAAGACA
CCTTTAAGTATCTTCTACCCCCAAATGAACCACGAATCAACCTTTTCTAT
ATCCTACCTAAAATCCACAAAGCAGGAATTCCAGGAAGGCCCATTGTATC
TTCTGTAAACTCGTTAACAGAAAACGTATCACAATTCTTAACAAAATGCA
TACAGCCACTAACACCAAACTCACACTCCTTCATTAAAGACACAAAagac
tttttaaaaagattgaTGACAAAGAAACACCTAGctaaacaaacaaaata
ccTCCTCACTATTGATGTCAAATCATTATACACCAATATACCCCATAACG
AGGGCATTGAAGCATGCCTTCATTATACAAAATTACATAAAAAGTCACTC
CCTACTTATACACCGAACAACAAAATTTTAGAGACACTCTTTAAATTTGT
CCTAGAAAACAACTACTTCACTTTTGAAGAAACACTCTACCACCAACGCT
TCGGGACAGCGATGGGAACCAAAATGGCGCCGCAGTACGCGACCTTATTT
CTCGGAAAACTAGAAGAAGAAAAGATTCTTATAAACCCATTTCTGGAATA
CATACTAGAATATGTAAGATTTCTAGATGACATCTTTATTCTTTGGGCTG
GAAGCCTTCAGAAattaaaag Run BLAST on NCBI protein sequence of TCONS_00050836-protein >TCONS_00050836-protein ID=TCONS_00050836-protein|Name=TCONS_00050836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
PIPDNPKIRSYFRKTSTDLTRFLKKLNKRPTTKNLTHHEYKALKRLSTNK
SIVIKKADKGGSIVILDKEDYKQKVFDHLTDTTSYGMTEVNPLKDIQTNL
TAFLETILYHYHINEDTFKYLLPPNEPRINLFYILPKIHKAGIPGRPIVS
SVNSLTENVSQFLTKCIQPLTPNSHSFIKDTKDFLKRLMTKKHLAKQTKY
LLTIDVKSLYTNIPHNEGIEACLHYTKLHKKSLPTYTPNNKILETLFKFV
LENNYFTFEETLYHQRFGTAMGTKMAPQYATLFLGKLEEEKILINPFLEY
ILEYVRFLDDIFILWAGSLQKLK Run BLAST on NCBI transcript from alignment at scaffold_189:48344..49314 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050836 ID=TCONS_00050836|Name=TCONS_00050836|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at scaffold_189:48344..49314 (Clytia hemisphaerica)
cttttaatTTCTGAAGGCTTCCAGCCCAAAGAATAAAGATGTCATCTAGA
AATCTTACATATTCTAGTATGTATTCCAGAAATGGGTTTATAAGAATCTT
TTCTTCTTCTAGTTTTCCGAGAAATAAGGTCGCGTACTGCGGCGCCATTT
TGGTTCCCATCGCTGTCCCGAAGCGTTGGTGGTAGAGTGTTTCTTCAAAA
GTGAAGTAGTTGTTTTCTAGGACAAATTTAAAGAGTGTCTCTAAAATTTT
GTTGTTCGGTGTATAAGTAGGGAGTGACTTTTTATGTAATTTTGTATAAT
GAAGGCATGCTTCAATGCCCTCGTTATGGGGTATATTGGTGTATAATGAT
TTGACATCAATAGTGAGGAggtattttgtttgtttagCTAGGTGTTTCTT
TGTCAtcaatctttttaaaaagtctTTTGTGTCTTTAATGAAGGAGTGTG
AGTTTGGTGTTAGTGGCTGTATGCATTTTGTTAAGAATTGTGATACGTTT
TCTGTTAACGAGTTTACAGAAGATACAATGGGCCTTCCTGGAATTCCTGC
TTTGTGGATTTTAGGTAGGATATAGAAAAGGTTGATTCGTGGTTCATTTG
GGGGTAGAAGATACTTAAAGGTGTCTTCGTTTATGTGGTAATGGTAAAGT
ATAGTTTCCAGGAAGGCAGTTAAATTTGTTTGGATATCTTTTAAAGGATT
AACTTCCGTCATTCCGTAAGAAGTTGTATCAGTCAGATGATCAAATACTT
TTTGTTTGTAATCCTCCTTGTCAAGGATTACAATAGAGCCGCCTTTGTCG
GCTTTTTTAATAACAATTGATTTATTGGTACTCAGTCTTTTTAGTGCTTT
ATATTCATGATGTGTTAAGTTTTTTGTTGTTGGTCTCTTgttgagttttt
tcaaaaaacgggTAAGGTCTGTGGATGTTTTTCGGAAGTAGGATCTAATT
TTTGGATTATCTGGGATAGGa Coding sequence (CDS) from alignment at scaffold_189:48344..49314 >TCONS_00050836 ID=TCONS_00050836|Name=TCONS_00050836|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_189:48344..49314 (Clytia hemisphaerica)
ttttaatTTCTGAAGGCTTCCAGCCCAAAGAATAAAGATGTCATCTAGAA
ATCTTACATATTCTAGTATGTATTCCAGAAATGGGTTTATAAGAATCTTT
TCTTCTTCTAGTTTTCCGAGAAATAAGGTCGCGTACTGCGGCGCCATTTT
GGTTCCCATCGCTGTCCCGAAGCGTTGGTGGTAGAGTGTTTCTTCAAAAG
TGAAGTAGTTGTTTTCTAGGACAAATTTAAAGAGTGTCTCTAAAATTTTG
TTGTTCGGTGTATAAGTAGGGAGTGACTTTTTATGTAATTTTGTATAATG
AAGGCATGCTTCAATGCCCTCGTTATGGGGTATATTGGTGTATAATGATT
TGACATCAATAGTGAGGAggtattttgtttgtttagCTAGGTGTTTCTTT
GTCAtcaatctttttaaaaagtctTTTGTGTCTTTAATGAAGGAGTGTGA
GTTTGGTGTTAGTGGCTGTATGCATTTTGTTAAGAATTGTGATACGTTTT
CTGTTAACGAGTTTACAGAAGATACAATGGGCCTTCCTGGAATTCCTGCT
TTGTGGATTTTAGGTAGGATATAGAAAAGGTTGATTCGTGGTTCATTTGG
GGGTAGAAGATACTTAAAGGTGTCTTCGTTTATGTGGTAATGGTAAAGTA
TAGTTTCCAGGAAGGCAGTTAAATTTGTTTGGATATCTTTTAAAGGATTA
ACTTCCGTCATTCCGTAAGAAGTTGTATCAGTCAGATGATCAAATACTTT
TTGTTTGTAATCCTCCTTGTCAAGGATTACAATAGAGCCGCCTTTGTCGG
CTTTTTTAATAACAATTGATTTATTGGTACTCAGTCTTTTTAGTGCTTTA
TATTCATGATGTGTTAAGTTTTTTGTTGTTGGTCTCTTgttgagtttttt
caaaaaacgggTAAGGTCTGTGGATGTTTTTCGGAAGTAGGATCTAATTT
TTGGATTATCTGGGATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050836-exon-scaffold_189-1491911889:48344..49314 | TCONS_00050836-exon-scaffold_189-1491911889:48344..49314 | Clytia hemisphaerica | exon |
| TCONS_00050836-exon-scaffold_189-1510915933:48344..49314 | TCONS_00050836-exon-scaffold_189-1510915933:48344..49314 | Clytia hemisphaerica | exon |
| TCONS_00050836-exon-scaffold_189-1575043694:48344..49314 | TCONS_00050836-exon-scaffold_189-1575043694:48344..49314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:48344..49314 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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