TCONS_00050839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050839
Unique NameTCONS_00050839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050839 ID=TCONS_00050839|Name=TCONS_00050839|organism=Clytia hemisphaerica|type=transcript|length=429bp
GTAATTTATCACTTGTTGGCAGCTGACATATAATGCACTTAGTCTTGTCA
TATGGCTCTGTCATTGATCTCGTTCGAACACCTTCATCCTCATTTTCCAC
ATTCACCACGCTTGGTCTTCCTGCCTTTCGTTTACTAACAGAAGGGTCTC
CGGTTTCGACGGACGTTGAGAAACGTTTTCTTGCTCGATTCAACTTCTCC
ACGTTTGTATATAACATATAACATGTTCTATGATATTGACAATGTTTATC
AATTAATTCCTGTGCTGTTACATTATGTGTACTTTGGACGAAATCTGCAA
CAGCGTGATCTTTGAAATCGTCTCTTTCTCTCGCCCTACTCAGCAGTTTC
TCAACAGATTCAATCGAGGGTTCCGAGACAAGCTTTTCTTTCGCAGTCTT
GCCTTTAGTTTTCCCACAAATAATGCAAC
Run BLAST on NCBI

protein sequence of TCONS_00050839-protein

>TCONS_00050839-protein ID=TCONS_00050839-protein|Name=TCONS_00050839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
CIICGKTKGKTAKEKLVSEPSIESVEKLLSRARERDDFKDHAVADFVQST
HNVTAQELIDKHCQYHRTCYMLYTNVEKLNRARKRFSTSVETGDPSVSKR
KAGRPSVVNVENEDEGVRTRSMTEPYDKTKCIICQLPTSDKL
Run BLAST on NCBI

transcript from alignment at scaffold_189:72641..73069

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050839 ID=TCONS_00050839|Name=TCONS_00050839|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_189:72641..73069 (Clytia hemisphaerica)
GTTGCATTATTTGTGGGAAAACTAAAGGCAAGACTGCGAAAGAAAAGCTT
GTCTCGGAACCCTCGATTGAATCTGTTGAGAAACTGCTGAGTAGGGCGAG
AGAAAGAGACGATTTCAAAGATCACGCTGTTGCAGATTTCGTCCAAAGTA
CACATAATGTAACAGCACAGGAATTAATTGATAAACATTGTCAATATCAT
AGAACATGTTATATGTTATATACAAACGTGGAGAAGTTGAATCGAGCAAG
AAAACGTTTCTCAACGTCCGTCGAAACCGGAGACCCTTCTGTTAGTAAAC
GAAAGGCAGGAAGACCAAGCGTGGTGAATGTGGAAAATGAGGATGAAGGT
GTTCGAACGAGATCAATGACAGAGCCATATGACAAGACTAAGTGCATTAT
ATGTCAGCTGCCAACAAGTGATAAATTAC

Coding sequence (CDS) from alignment at scaffold_189:72641..73069

>TCONS_00050839 ID=TCONS_00050839|Name=TCONS_00050839|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_189:72641..73069 (Clytia hemisphaerica)
TGCATTATTTGTGGGAAAACTAAAGGCAAGACTGCGAAAGAAAAGCTTGT
CTCGGAACCCTCGATTGAATCTGTTGAGAAACTGCTGAGTAGGGCGAGAG
AAAGAGACGATTTCAAAGATCACGCTGTTGCAGATTTCGTCCAAAGTACA
CATAATGTAACAGCACAGGAATTAATTGATAAACATTGTCAATATCATAG
AACATGTTATATGTTATATACAAACGTGGAGAAGTTGAATCGAGCAAGAA
AACGTTTCTCAACGTCCGTCGAAACCGGAGACCCTTCTGTTAGTAAACGA
AAGGCAGGAAGACCAAGCGTGGTGAATGTGGAAAATGAGGATGAAGGTGT
TCGAACGAGATCAATGACAGAGCCATATGACAAGACTAAGTGCATTATAT
GTCAGCTGCCAACAAGTGATAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032209XLOC_032209Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050839-proteinTCONS_00050839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050839-exon-scaffold_189-1491911889:72641..73069TCONS_00050839-exon-scaffold_189-1491911889:72641..73069Clytia hemisphaericaexon
TCONS_00050839-exon-scaffold_189-1510915933:72641..73069TCONS_00050839-exon-scaffold_189-1510915933:72641..73069Clytia hemisphaericaexon
TCONS_00050839-exon-scaffold_189-1575043694:72641..73069TCONS_00050839-exon-scaffold_189-1575043694:72641..73069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:72641..73069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296236	0.00141682	0	0	0	0	0.672043	1.18858	0	0.33665	0.262131	0.712937	0.415584	1.22519	0	0.0982688	0	0.248163	0	0.179385	0.0323073	0	0	0	1.90454	1.78174	0	0	0.178989	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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