TCONS_00050848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050848
Unique NameTCONS_00050848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050848 ID=TCONS_00050848|Name=TCONS_00050848|organism=Clytia hemisphaerica|type=transcript|length=404bp
CTGATGTTGAAATAGTACTTCTTTATGAACTCATACACAAGTATGGGGAG
TATAACAACTCTAAAATTCTAAAAGCCTTTAACTTACAGGCTGTTGAATT
GAGAAAGCTCTCATACCAGATAGACACTAAGTCGACAAATCAAATAAGTG
CTAAAGTTGCAAGCTCAGAATCAAGAGAGTGGTTTTCAGGTATTTTAACA
ATGATGTTGAAGTGTTAGTAATTGACGCTAAAAAACCAAAacttattttt
gttgtttctacatcttatttttctattatgTAGTATCCGAACTCtagatt
attttttattttgatgtttctgcCATTACAGCTCTGTCTAGCTAGATACT
TGCAGGGTTCGAAAATTTCTAGCTTCCCACAATATTTGACTTGTCAAACA
CGCA
Run BLAST on NCBI

transcript from alignment at scaffold_189:182711..183114

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050848 ID=TCONS_00050848|Name=TCONS_00050848|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at scaffold_189:182711..183114 (Clytia hemisphaerica)
TGCGTGTTTGACAAGTCAAATATTGTGGGAAGCTAGAAATTTTCGAACCC
TGCAAGTATCTAGCTAGACAGAGCTGTAATGgcagaaacatcaaaataaa
aaataatctaGAGTTCGGATACTAcataatagaaaaataagatgtagaaa
caacaaaaataagtTTTGGTTTTTTAGCGTCAATTACTAACACTTCAACA
TCATTGTTAAAATACCTGAAAACCACTCTCTTGATTCTGAGCTTGCAACT
TTAGCACTTATTTGATTTGTCGACTTAGTGTCTATCTGGTATGAGAGCTT
TCTCAATTCAACAGCCTGTAAGTTAAAGGCTTTTAGAATTTTAGAGTTGT
TATACTCCCCATACTTGTGTATGAGTTCATAAAGAAGTACTATTTCAACA
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032218XLOC_032218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050848-exon-scaffold_189-1491911889:182711..183114TCONS_00050848-exon-scaffold_189-1491911889:182711..183114Clytia hemisphaericaexon
TCONS_00050848-exon-scaffold_189-1510915933:182711..183114TCONS_00050848-exon-scaffold_189-1510915933:182711..183114Clytia hemisphaericaexon
TCONS_00050848-exon-scaffold_189-1575043694:182711..183114TCONS_00050848-exon-scaffold_189-1575043694:182711..183114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:182711..183114 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.14198	0.631109	0.205999	0.403075	1.06664	1.16328	0.467818	0.875931	0.459945	0.569716	0.509475	0.242338	0.242001	0.376981	0.238617	0.221735	0.273159	0.279979	0	0	1.23042	0.862131	1.25163	1.31037	0.586014	0.174334	0.498944	0.717361	0.605808	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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