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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050849 ID=TCONS_00050849|Name=TCONS_00050849|organism=Clytia hemisphaerica|type=transcript|length=977bp
TCTTGATTTGTGAGTTTAAGTGTGGAGAGGTTAGTAAAAATGTTAGCTGG
ATTCGATTTTGGggtatttcttttatttatatttcttgTGATTGTATCGA
AATTAGGGGTAGTTTTTGTGCTGTTGTTCAAGGTTTTCTTATAATCAAAT
TGTTTAAAAGGTGGttgttcaaaaatgttcttataattaatttGTTTAAA
AGGTGGTTGTTCAAAAAAACGtggagatttttttgtttttgtttgtgttA
TTTGTTCTTGTTTACCTGatgttttgttatgtttttgacTATTTACAATA
TTTACATAAAAATCTAGTTTTTTGTCTTCCTATTGTTGTTGAAGAAAGTA
TTGTCATTCGACTTTCTATTGTTGTTGAAGGTGTTGTCCGACTTTCTTTT
TCGACTTTGGTAAGCCTGGTTTCTGTTGCTTTCATCTATGGAGTATTGCT
CTCTCACTTCTTTGTCCAGTTTTTCTAGTTCTTCTTTAGTTAAGGTCGCT
AAATATGCGTTCCTTTGTTCCTTATGGAACTTTATTTGTTCCTTGTGGTG
ATCTATTGTAAGATTCCTAAGCTTTCGCCCGGCTTCATCAAGGATTTGTG
TCCATCTTACACGGTGGTCTTCCGAAAGGTGGAGGTTGCAATTAACTTGT
GGAGTTAAGCCTTCTGGTGTTGTTCGGTTGTTTTGGTGGTTTTCAAGTTT
AGACAGTTGCCTGTCGTGTACAATCGCGCGCATCGTGTGGAATTTATACT
GTTTTCCTTTGTTTGGCTGGAAGCTTTTTATAAATTCGtcattgttgttg
ttgttgttgttggtacGTTGGGGTGTTCGATGTCGTCTTGTGAGTTGGTC
GACGATATCATTGCCGTTTGAATTCGCGTCGGGTTGGTTAGCTTGTCGTT
TGTGTTGACGTTCTTCTTCTTGATTGTTAAATAATTCTTCGTTATTCgag
ttttgtttgtttcttgTTAGAACATCG Run BLAST on NCBI protein sequence of TCONS_00050849-protein >TCONS_00050849-protein ID=TCONS_00050849-protein|Name=TCONS_00050849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
DVLTRNKQNSNNEELFNNQEEERQHKRQANQPDANSNGNDIVDQLTRRHR
TPQRTNNNNNNNDEFIKSFQPNKGKQYKFHTMRAIVHDRQLSKLENHQNN
RTTPEGLTPQVNCNLHLSEDHRVRWTQILDEAGRKLRNLTIDHHKEQIKF
HKEQRNAYLATLTKEELEKLDKEVREQYSIDESNRNQAYQSRKRKSDNTF
NNNRKSNDNTFFNNNRKTKN Run BLAST on NCBI transcript from alignment at scaffold_189:184788..185764 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050849 ID=TCONS_00050849|Name=TCONS_00050849|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at scaffold_189:184788..185764 (Clytia hemisphaerica)
CGATGTTCTAAcaagaaacaaacaaaactcGAATAACGAAGAATTATTTA
ACAATCAAGAAGAAGAACGTCAACACAAACGACAAGCTAACCAACCCGAC
GCGAATTCAAACGGCAATGATATCGTCGACCAACTCACAAGACGACATCG
AACACCCCAACgtaccaacaacaacaacaacaacaatgaCGAATTTATAA
AAAGCTTCCAGCCAAACAAAGGAAAACAGTATAAATTCCACACGATGCGC
GCGATTGTACACGACAGGCAACTGTCTAAACTTGAAAACCACCAAAACAA
CCGAACAACACCAGAAGGCTTAACTCCACAAGTTAATTGCAACCTCCACC
TTTCGGAAGACCACCGTGTAAGATGGACACAAATCCTTGATGAAGCCGGG
CGAAAGCTTAGGAATCTTACAATAGATCACCACAAGGAACAAATAAAGTT
CCATAAGGAACAAAGGAACGCATATTTAGCGACCTTAACTAAAGAAGAAC
TAGAAAAACTGGACAAAGAAGTGAGAGAGCAATACTCCATAGATGAAAGC
AACAGAAACCAGGCTTACCAAAGTCGAAAAAGAAAGTCGGACAACACCTT
CAACAACAATAGAAAGTCGAATGACAATACTTTCTTCAACAACAATAGGA
AGACAAAAAACTAGATTTTTATGTAAATATTGTAAATAgtcaaaaacata
acaaaacatCAGGTAAACAAGAACAAATaacacaaacaaaaacaaaaaaa
tctccaCGTTTTTTTGAACAACCACCTTTTAAACaaattaattataagaa
catttttgaacaaCCACCTTTTAAACAATTTGATTATAAGAAAACCTTGA
ACAACAGCACAAAAACTACCCCTAATTTCGATACAATCAcaagaaatata
aataaaagaaataccCCAAAATCGAATCCAGCTAACATTTTTACTAACCT
CTCCACACTTAAACTCACAAATCAAGA Coding sequence (CDS) from alignment at scaffold_189:184788..185764 >TCONS_00050849 ID=TCONS_00050849|Name=TCONS_00050849|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_189:184788..185764 (Clytia hemisphaerica)
GATGTTCTAAcaagaaacaaacaaaactcGAATAACGAAGAATTATTTAA
CAATCAAGAAGAAGAACGTCAACACAAACGACAAGCTAACCAACCCGACG
CGAATTCAAACGGCAATGATATCGTCGACCAACTCACAAGACGACATCGA
ACACCCCAACgtaccaacaacaacaacaacaacaatgaCGAATTTATAAA
AAGCTTCCAGCCAAACAAAGGAAAACAGTATAAATTCCACACGATGCGCG
CGATTGTACACGACAGGCAACTGTCTAAACTTGAAAACCACCAAAACAAC
CGAACAACACCAGAAGGCTTAACTCCACAAGTTAATTGCAACCTCCACCT
TTCGGAAGACCACCGTGTAAGATGGACACAAATCCTTGATGAAGCCGGGC
GAAAGCTTAGGAATCTTACAATAGATCACCACAAGGAACAAATAAAGTTC
CATAAGGAACAAAGGAACGCATATTTAGCGACCTTAACTAAAGAAGAACT
AGAAAAACTGGACAAAGAAGTGAGAGAGCAATACTCCATAGATGAAAGCA
ACAGAAACCAGGCTTACCAAAGTCGAAAAAGAAAGTCGGACAACACCTTC
AACAACAATAGAAAGTCGAATGACAATACTTTCTTCAACAACAATAGGAA
GACAAAAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050849-exon-scaffold_189-1491911889:184788..185764 | TCONS_00050849-exon-scaffold_189-1491911889:184788..185764 | Clytia hemisphaerica | exon |
| TCONS_00050849-exon-scaffold_189-1510915933:184788..185764 | TCONS_00050849-exon-scaffold_189-1510915933:184788..185764 | Clytia hemisphaerica | exon |
| TCONS_00050849-exon-scaffold_189-1575043694:184788..185764 | TCONS_00050849-exon-scaffold_189-1575043694:184788..185764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:184788..185764 . |
Blast
The following BLAST results are available for this feature:
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