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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050853 ID=TCONS_00050853|Name=TCONS_00050853|organism=Clytia hemisphaerica|type=transcript|length=2125bp
ccaaacaaaaaaaaagaaaccacgagacacgcactttttttcttgtgttg
cattgcaccaacgcgaacaaaaacttcttgtgtccccaagcctttacagt
agtaaaaaatctaattaaaaatgacaaaagacgCACGATACGCATAACAC
AGAGAATTAAGATACTAATTAAATTTCCAAAACAATGTCTTTCTGCCGAA
TACTGTCACACTTTATTTACACCATACAGCTGAAATGTTCGCTTTCTAAA
AGTATCCGTTTCTCCAATTGGGTTAAAATATCAACAGAGGACTAAATTTA
ACCAACACAAatccaaatttcatttttgatagCATGCCGAATTAAAGTCA
TGCCAACAGGTGTAAATTTAAGTATAAACTCATCTTTTTGGTTGATGTAG
GTCAAAACAACTTATTCTCCATTCGAATTACAATTCACATTTTCGAATCC
ATCCGTTGTGCTGATTCGAATAGAATTTGACGGAAAGGAGAGAACTGTAA
ATGGTACGTtagcttttgaaaaataaaatttatgccAACAGGTGTAAATT
TACGGTCTTTCAAATATAAGTACCAGACAAAGATGACAGCAAATTAACCC
TTGTTATATACGATATATTACATTTTTAATTGAGTGGAGTGACTATAGTT
GGCCATAGTTATACGTTTTGTTACTTTTCGATTCCCAGATACTCGAAAAT
TGAAGCTGGCATATTGAAATTCTTTATATAGATTTCATCAAAAGAAGTCA
AAGTTGAAAGTCTTGCTAAGTGTTTTAAAGATGGGAAGTCGTTGCCATAT
TTGATCGGTACTGCTTTGAGTATAAACTCGTTTTCTTTGTTGATGTAGGT
CAAAACAACCTCTTCTCCATTCCAATTAGAATTTATATCCTGTATCCCAC
AACACATTGTGCTGATTCGAATAGCATTTGACTTCTGATGTgttctcaaa
tcaaaatatcTATGCTTATATATAACGTCTTCCAATTTTTGCTTACTGTA
GGCTAACAGATATCGATCAAGCTTCTTGGATATACCATAAGTTTCAAATT
CACGGTTGTGTGGATTCATTTCTTTTCTGAATTTATCTTCATTAATGGAT
TTTACAGTCATAAATTCACCTTTGTGAAGCTTAACTAGTTGTTTTCGGCC
ATCATCATTAGAATATGTCAAGTAGAAACCACCCTCATTTATGTCATCAG
ATTTTACCATGAAAATGTTTTTGCCATACAGAGGATACTCATAACAAATG
TTCCCATCGAAATCATATTCCAATAATTTCATTGTGGATTCGAAACCAGC
GTAAATCTTTTCGCCAGCTAAATAAATCATGGGAGCTTTTTCAAATATGC
TTGTATCAATGGTGACATTTTTATGATGTTTTGTACTCTCCACAGTCATG
TACACTACATCAATCcgacaatgtttttgtttatatGTTCGCTTGTCTAG
ATTGATAGCTTTTACGAAAAATATATTCCCATTTTGGTTTCTACACCAAG
CATTGTAACGCACAAAGTTATATTTCTCTTCGCCATAGTCTATTGACAAA
TCCGGCTTCCTACTTTCATCAATGGTTAAAAGATAATCGTTTTTCGTCAG
AACGTCAAACAAGGAATAGTGATAGATATCCACAACTAACTTGCGAGTCC
ATTTTCCAGGCACCCGAAGCCAATTTGCAACGGTGTGAACCAAGTTGGCG
CTATACGGATCGAAATGTGTTTCCCTATTTCTTTTAACaccattttcttc
aatttcattCACTTGTACCCGCAATAAATtcttttgaagttcattttgat
CGAAATACACGATATGGATTTTGATTTCAGGGTGTTCTTGAAATATAAGA
TAATACTGACCAGTAGCTTCAAATCCTTGCGTCAACTTGTTCAAATAGTC
ATTACCTTGCATTGATGAATAATCTCCAACTTGATTGACAGTTCTGATCC
TTCTTTTCTTTGATGAACTTGCCATGGTATGAACATTGATTTAGGTTTCG
ATATTGATGCCATTATGTTTTTACCAAGGCGGTTTTCAAAGTTGTCTTCT
TCAACGACTATCGACTATCGACTGCTATGTGATAAATATTCCGCCAACTG
TAGAGATTTCTTCAAGAAATGTTTT Run BLAST on NCBI protein sequence of TCONS_00050853-protein >TCONS_00050853-protein ID=TCONS_00050853-protein|Name=TCONS_00050853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MASSSKKRRIRTVNQVGDYSSMQGNDYLNKLTQGFEATGQYYLIFQEHPE
IKIHIVYFDQNELQKNLLRVQVNEIEENGVKRNRETHFDPYSANLVHTVA
NWLRVPGKWTRKLVVDIYHYSLFDVLTKNDYLLTIDESRKPDLSIDYGEE
KYNFVRYNAWCRNQNGNIFFVKAINLDKRTYKQKHCRIDVVYMTVESTKH
HKNVTIDTSIFEKAPMIYLAGEKIYAGFESTMKLLEYDFDGNICYEYPLY
GKNIFMVKSDDINEGGFYLTYSNDDGRKQLVKLHKGEFMTVKSINEDKFR
KEMNPHNREFETYGISKKLDRYLLAYSKQKLEDVIYKHRYFDLRTHQKSN
AIRISTMCCGIQDINSNWNGEEVVLTYINKENEFILKAVPIKYGNDFPSL
KHLARLSTLTSFDEIYIKNFNMPASIFEYLGIEK Run BLAST on NCBI transcript from alignment at scaffold_189:227639..229763 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050853 ID=TCONS_00050853|Name=TCONS_00050853|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at scaffold_189:227639..229763 (Clytia hemisphaerica)
AAAACATTTCTTGAAGAAATCTCTACAGTTGGCGGAATATTTATCACATA
GCAGTCGATAGTCGATAGTCGTTGAAGAAGACAACTTTGAAAACCGCCTT
GGTAAAAACATAATGGCATCAATATCGAAACCTAAATCAATGTTCATACC
ATGGCAAGTTCATCAAAGAAAAGAAGGATCAGAACTGTCAATCAAGTTGG
AGATTATTCATCAATGCAAGGTAATGACTATTTGAACAAGTTGACGCAAG
GATTTGAAGCTACTGGTCAGTATTATCTTATATTTCAAGAACACCCTGAA
ATCAAAATCCATATCGTGTATTTCGatcaaaatgaacttcaaaagaATTT
ATTGCGGGTACAAGTGaatgaaattgaagaaaatggtGTTAAAAGAAATA
GGGAAACACATTTCGATCCGTATAGCGCCAACTTGGTTCACACCGTTGCA
AATTGGCTTCGGGTGCCTGGAAAATGGACTCGCAAGTTAGTTGTGGATAT
CTATCACTATTCCTTGTTTGACGTTCTGACGAAAAACGATTATCTTTTAA
CCATTGATGAAAGTAGGAAGCCGGATTTGTCAATAGACTATGGCGAAGAG
AAATATAACTTTGTGCGTTACAATGCTTGGTGTAGAAACCAAAATGGGAA
TATATTTTTCGTAAAAGCTATCAATCTAGACAAGCGAACatataaacaaa
aacattgtcgGATTGATGTAGTGTACATGACTGTGGAGAGTACAAAACAT
CATAAAAATGTCACCATTGATACAAGCATATTTGAAAAAGCTCCCATGAT
TTATTTAGCTGGCGAAAAGATTTACGCTGGTTTCGAATCCACAATGAAAT
TATTGGAATATGATTTCGATGGGAACATTTGTTATGAGTATCCTCTGTAT
GGCAAAAACATTTTCATGGTAAAATCTGATGACATAAATGAGGGTGGTTT
CTACTTGACATATTCTAATGATGATGGCCGAAAACAACTAGTTAAGCTTC
ACAAAGGTGAATTTATGACTGTAAAATCCATTAATGAAGATAAATTCAGA
AAAGAAATGAATCCACACAACCGTGAATTTGAAACTTATGGTATATCCAA
GAAGCTTGATCGATATCTGTTAGCCTACAGTAAGCAAAAATTGGAAGACG
TTATATATAAGCATAgatattttgatttgagaacACATCAGAAGTCAAAT
GCTATTCGAATCAGCACAATGTGTTGTGGGATACAGGATATAAATTCTAA
TTGGAATGGAGAAGAGGTTGTTTTGACCTACATCAACAAAGAAAACGAGT
TTATACTCAAAGCAGTACCGATCAAATATGGCAACGACTTCCCATCTTTA
AAACACTTAGCAAGACTTTCAACTTTGACTTCTTTTGATGAAATCTATAT
AAAGAATTTCAATATGCCAGCTTCAATTTTCGAGTATCTGGGAATCGAAA
AGTAACAAAACGTATAACTATGGCCAACTATAGTCACTCCACTCAATTAA
AAATGTAATATATCGTATATAACAAGGGTTAATTTGCTGTCATCTTTGTC
TGGTACTTATATTTGAAAGACCGTAAATTTACACCTGTTggcataaattt
tatttttcaaaagctaACGTACCATTTACAGTTCTCTCCTTTCCGTCAAA
TTCTATTCGAATCAGCACAACGGATGGATTCGAAAATGTGAATTGTAATT
CGAATGGAGAATAAGTTGTTTTGACCTACATCAACCAAAAAGATGAGTTT
ATACTTAAATTTACACCTGTTGGCATGACTTTAATTCGGCATGctatcaa
aaatgaaatttggatTTGTGTTGGTTAAATTTAGTCCTCTGTTGATATTT
TAACCCAATTGGAGAAACGGATACTTTTAGAAAGCGAACATTTCAGCTGT
ATGGTGTAAATAAAGTGTGACAGTATTCGGCAGAAAGACATTGTTTTGGA
AATTTAATTAGTATCTTAATTCTCTGTGTTATGCGTATCGTGcgtctttt
gtcatttttaattagattttttactactgtaaaggcttggggacacaaga
agtttttgttcgcgttggtgcaatgcaacacaagaaaaaaagtgcgtgtc
tcgtggtttctttttttttgtttgg Coding sequence (CDS) from alignment at scaffold_189:227639..229763 >TCONS_00050853 ID=TCONS_00050853|Name=TCONS_00050853|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_189:227639..229763 (Clytia hemisphaerica)
ATGGCAAGTTCATCAAAGAAAAGAAGGATCAGAACTGTCAATCAAGTTGG
AGATTATTCATCAATGCAAGGTAATGACTATTTGAACAAGTTGACGCAAG
GATTTGAAGCTACTGGTCAGTATTATCTTATATTTCAAGAACACCCTGAA
ATCAAAATCCATATCGTGTATTTCGatcaaaatgaacttcaaaagaATTT
ATTGCGGGTACAAGTGaatgaaattgaagaaaatggtGTTAAAAGAAATA
GGGAAACACATTTCGATCCGTATAGCGCCAACTTGGTTCACACCGTTGCA
AATTGGCTTCGGGTGCCTGGAAAATGGACTCGCAAGTTAGTTGTGGATAT
CTATCACTATTCCTTGTTTGACGTTCTGACGAAAAACGATTATCTTTTAA
CCATTGATGAAAGTAGGAAGCCGGATTTGTCAATAGACTATGGCGAAGAG
AAATATAACTTTGTGCGTTACAATGCTTGGTGTAGAAACCAAAATGGGAA
TATATTTTTCGTAAAAGCTATCAATCTAGACAAGCGAACatataaacaaa
aacattgtcgGATTGATGTAGTGTACATGACTGTGGAGAGTACAAAACAT
CATAAAAATGTCACCATTGATACAAGCATATTTGAAAAAGCTCCCATGAT
TTATTTAGCTGGCGAAAAGATTTACGCTGGTTTCGAATCCACAATGAAAT
TATTGGAATATGATTTCGATGGGAACATTTGTTATGAGTATCCTCTGTAT
GGCAAAAACATTTTCATGGTAAAATCTGATGACATAAATGAGGGTGGTTT
CTACTTGACATATTCTAATGATGATGGCCGAAAACAACTAGTTAAGCTTC
ACAAAGGTGAATTTATGACTGTAAAATCCATTAATGAAGATAAATTCAGA
AAAGAAATGAATCCACACAACCGTGAATTTGAAACTTATGGTATATCCAA
GAAGCTTGATCGATATCTGTTAGCCTACAGTAAGCAAAAATTGGAAGACG
TTATATATAAGCATAgatattttgatttgagaacACATCAGAAGTCAAAT
GCTATTCGAATCAGCACAATGTGTTGTGGGATACAGGATATAAATTCTAA
TTGGAATGGAGAAGAGGTTGTTTTGACCTACATCAACAAAGAAAACGAGT
TTATACTCAAAGCAGTACCGATCAAATATGGCAACGACTTCCCATCTTTA
AAACACTTAGCAAGACTTTCAACTTTGACTTCTTTTGATGAAATCTATAT
AAAGAATTTCAATATGCCAGCTTCAATTTTCGAGTATCTGGGAATCGAAA
AGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050853-exon-scaffold_189-1491911889:227639..229763 | TCONS_00050853-exon-scaffold_189-1491911889:227639..229763 | Clytia hemisphaerica | exon |
| TCONS_00050853-exon-scaffold_189-1510915933:227639..229763 | TCONS_00050853-exon-scaffold_189-1510915933:227639..229763 | Clytia hemisphaerica | exon |
| TCONS_00050853-exon-scaffold_189-1575043694:227639..229763 | TCONS_00050853-exon-scaffold_189-1575043694:227639..229763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_189 | supercontig | scaffold_189:227639..229763 . |
Blast
The following BLAST results are available for this feature:
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