TCONS_00050857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050857
Unique NameTCONS_00050857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050857 ID=TCONS_00050857|Name=TCONS_00050857|organism=Clytia hemisphaerica|type=transcript|length=532bp
TTTTCGCACTGTTCAATCCTATAATGgatattttggtttataatttgatg
GCTAAAAATCGTAAACAGATTGTGGCCAAGATATTCAGATTgtaaaacaa
aactttcaaacacatACGAAGCAGTGTGAAAGCACCTTTACGCCCATATA
AGGGTGTGAAAGCGCCTTCACGCCCATGTGAGGGTGTCCAGCTAAATCTT
GATCAGCTGATCCCTATGGTAGGGATCCATCATGATTTTCCTAGTAATGT
GGAATGGACACAATTCCACACCTGATTAAATAAATATCAAATCAGCTCCT
CGGAGACTGAAGTTCACCTCTAGTCATTAAAATTCAACCATATTCAAATG
GCAGATTTTAAGACATTTTTCGATAAACACAGacaatacagggtgtccgg
aaaaaaagtgtcgagtcgtaccacttccatagaaagaaagttcttgtgtg
tgtttcactaaatttgcaatgtttatcaaagtttctctatGTGTCATATT
AACTGCGGGATTAACTGTCATGAGACATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_189:277460..277991

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050857 ID=TCONS_00050857|Name=TCONS_00050857|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_189:277460..277991 (Clytia hemisphaerica)
AAAAATGTCTCATGACAGTTAATCCCGCAGTTAATATGACACatagagaa
actttgataaacattgcaaatttagtgaaacacacacaagaactttcttt
ctatggaagtggtacgactcgacactttttttccggacaccctgtattgt
CTGTGTTTATCGAAAAATGTCTTAAAATCTGCCATTTGAATATGGTTGAA
TTTTAATGACTAGAGGTGAACTTCAGTCTCCGAGGAGCTGATTTGATATT
TATTTAATCAGGTGTGGAATTGTGTCCATTCCACATTACTAGGAAAATCA
TGATGGATCCCTACCATAGGGATCAGCTGATCAAGATTTAGCTGGACACC
CTCACATGGGCGTGAAGGCGCTTTCACACCCTTATATGGGCGTAAAGGTG
CTTTCACACTGCTTCGTatgtgtttgaaagttttgttttacAATCTGAAT
ATCTTGGCCACAATCTGTTTACGATTTTTAGCcatcaaattataaaccaa
aatatcCATTATAGGATTGAACAGTGCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032227XLOC_032227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050857-exon-scaffold_189-1491911889:277460..277991TCONS_00050857-exon-scaffold_189-1491911889:277460..277991Clytia hemisphaericaexon
TCONS_00050857-exon-scaffold_189-1510915933:277460..277991TCONS_00050857-exon-scaffold_189-1510915933:277460..277991Clytia hemisphaericaexon
TCONS_00050857-exon-scaffold_189-1575043694:277460..277991TCONS_00050857-exon-scaffold_189-1575043694:277460..277991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:277460..277991 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179086	0	0.064681	0.18747	0.40746	0.367723	0.147475	0.719739	1.27197	0.601589	1.66921	1.01043	0	0.286387	0.113756	0.276355	0	0.127268	0.763597	0.168413	0.51743	0.73853	0	0.334855	0.271703	0.306639	0	0.223972	0.121912	0.576484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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