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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050863 ID=TCONS_00050863|Name=TCONS_00050863|organism=Clytia hemisphaerica|type=transcript|length=1740bp
gggattgatattcccatatttcttattgctggggatttcaattcttttgt
tttcaagtcagaaaattcagtggggatgaaaaaaaaGTAAATATTTTGCA
GTGAGGATTGATTTATTGGATTATTCTTAGTGGGACAAAAATTGGAGGAA
AATTTTCCACAGGGGACGATATTCTGGCCAATTTTTCCAGTGGGTCTGTG
AGAAGGGGGTGTTTTAAAATCTCCTCGTATTGAATACTTCTATAAATTAC
ctaatcttctttttttcagagAAGCAAAATTCAAGACAAAAGTATATGGA
ATAGAAAAATTAAGATAGAATAACCATGACTCTATGGATTTCTAGGTTGA
TTATTTTGATATGGTCTATCGGCAAAATATCTACCTTCAGGTGTCAACCA
ACCGATGGGAACTTAACAATATTTTCATGCAATTGTTTATTCACAGACGC
ACAGAGTTGGTTAGTATATGAAGCTccgttttttcaaaacaaaaatgtga
cCTTCTTTAAAGAATTGGTAAGTGTTTACAGTGGTGATGTTGGAGAACCC
AAGAAGTGTATTTTTACTTCAAATGAACATGTTTTATGCCCTTACAACCT
TTACAGAAGCAAATTTATTCGACAAAATGTGACGTTAAAACTGACAGAAG
CTGCAGGGGGCAAAGTTCATTGGATGCAATATATGCTTAATAAATATGCG
ACAAATGACTGCATATGTAACTTAACCCAGTCTTGGGATACGGAACAAAC
GTCTTGGAAAAAACTTCTAGTTAAGTGGAAATTACCTATCGTTGATGCGT
ATTTTTACAATGAAATCGCCTCATCACAAACTNGGAACAAACGTCTTGGA
AAAAACTTCTAGTTAAGTGGAAATTACCTATCGTTGATGCGTATTTTTAC
AATGAAATCGCCTCATCACAAACTCATGTATTTTCAAATTCCAAAATACC
TGAAGGTAAACCAAGTAATGTTGGCGTGTATTCTGTATCCGATATTATTA
GACAATACGGACAGCCAAGTATGCGGATATGCGTTAAAACGGAAATCAAC
TATTGTGCCGATCAATATCAATTACCAAAGACATGCAAAAATGTTACACT
TGATCGAGATTTGTTATTTGAGCATTTCCAGATAGCAAGTTCATCGTGCA
AAGGAGACGATGAAAAAGCTGTATTAACTTGGAAAGTTAAAGATGAATTT
CTAGAATACCCAAGAAACATTCTCAAATATCAAATCAATATATTTGATGA
TGACAGCAATACACCGGTTCAAACGTTGACAACAGCTTCGAAGTCGGTCA
CCATCAAACAGAATAATATTTATAGATACCAAATCAAACAATGTCTGAAA
AATGGCGAATGTTATGAATTCAGTGAACAAGGAAACTGTGAAATAGATAC
CTCATTCAataatcattattttttgataCTCCTCGCACCACTAGCTGTGG
CAAGCATTGGTTTTGTGGTATGGTTCTATTGCTTTAGAACTGAACATGCC
AAAGGAGAGAAGACTTCAGACGGACATGTAGATATTGAAGAGATAGTTAA
TCCAAATTATTATAACAAGGAGGTCCACATATTGGAAGCTATTTCACCAG
CAAATGTTTATGATGACTACGGTTTTCGTGGCCCAACACTGGAAAAGGAA
GACTCTTTTGATCACCTTAATATCTGAACTTAATCAACGtgctttttaaa
tttctttttgtgtATATTTTATATTCGAGTTTcagcaaat Run BLAST on NCBI protein sequence of TCONS_00050863-protein >TCONS_00050863-protein ID=TCONS_00050863-protein|Name=TCONS_00050863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MRICVKTEINYCADQYQLPKTCKNVTLDRDLLFEHFQIASSSCKGDDEKA
VLTWKVKDEFLEYPRNILKYQINIFDDDSNTPVQTLTTASKSVTIKQNNI
YRYQIKQCLKNGECYEFSEQGNCEIDTSFNNHYFLILLAPLAVASIGFVV
WFYCFRTEHAKGEKTSDGHVDIEEIVNPNYYNKEVHILEAISPANVYDDY
GFRGPTLEKEDSFDHLNI Run BLAST on NCBI transcript from alignment at scaffold_189:309981..311720 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050863 ID=TCONS_00050863|Name=TCONS_00050863|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at scaffold_189:309981..311720 (Clytia hemisphaerica)
atttgctgAAACTCGAATATAAAATATacacaaaaagaaatttaaaaagc
aCGTTGATTAAGTTCAGATATTAAGGTGATCAAAAGAGTCTTCCTTTTCC
AGTGTTGGGCCACGAAAACCGTAGTCATCATAAACATTTGCTGGTGAAAT
AGCTTCCAATATGTGGACCTCCTTGTTATAATAATTTGGATTAACTATCT
CTTCAATATCTACATGTCCGTCTGAAGTCTTCTCTCCTTTGGCATGTTCA
GTTCTAAAGCAATAGAACCATACCACAAAACCAATGCTTGCCACAGCTAG
TGGTGCGAGGAGtatcaaaaaataatgattatTGAATGAGGTATCTATTT
CACAGTTTCCTTGTTCACTGAATTCATAACATTCGCCATTTTTCAGACAT
TGTTTGATTTGGTATCTATAAATATTATTCTGTTTGATGGTGACCGACTT
CGAAGCTGTTGTCAACGTTTGAACCGGTGTATTGCTGTCATCATCAAATA
TATTGATTTGATATTTGAGAATGTTTCTTGGGTATTCTAGAAATTCATCT
TTAACTTTCCAAGTTAATACAGCTTTTTCATCGTCTCCTTTGCACGATGA
ACTTGCTATCTGGAAATGCTCAAATAACAAATCTCGATCAAGTGTAACAT
TTTTGCATGTCTTTGGTAATTGATATTGATCGGCACAATAGTTGATTTCC
GTTTTAACGCATATCCGCATACTTGGCTGTCCGTATTGTCTAATAATATC
GGATACAGAATACACGCCAACATTACTTGGTTTACCTTCAGGTATTTTGG
AATTTGAAAATACATGAGTTTGTGATGAGGCGATTTCATTGTAAAAATAC
GCATCAACGATAGGTAATTTCCACTTAACTAGAAGTTTTTTCCAAGACGT
TTGTTCCNAGTTTGTGATGAGGCGATTTCATTGTAAAAATACGCATCAAC
GATAGGTAATTTCCACTTAACTAGAAGTTTTTTCCAAGACGTTTGTTCCG
TATCCCAAGACTGGGTTAAGTTACATATGCAGTCATTTGTCGCATATTTA
TTAAGCATATATTGCATCCAATGAACTTTGCCCCCTGCAGCTTCTGTCAG
TTTTAACGTCACATTTTGTCGAATAAATTTGCTTCTGTAAAGGTTGTAAG
GGCATAAAACATGTTCATTTGAAGTAAAAATACACTTCTTGGGTTCTCCA
ACATCACCACTGTAAACACTTACCAATTCTTTAAAGAAGgtcacattttt
gttttgaaaaaacggAGCTTCATATACTAACCAACTCTGTGCGTCTGTGA
ATAAACAATTGCATGAAAATATTGTTAAGTTCCCATCGGTTGGTTGACAC
CTGAAGGTAGATATTTTGCCGATAGACCATATCAAAATAATCAACCTAGA
AATCCATAGAGTCATGGTTATTCTATCTTAATTTTTCTATTCCATATACT
TTTGTCTTGAATTTTGCTTctctgaaaaaaagaagattagGTAATTTATA
GAAGTATTCAATACGAGGAGATTTTAAAACACCCCCTTCTCACAGACCCA
CTGGAAAAATTGGCCAGAATATCGTCCCCTGTGGAAAATTTTCCTCCAAT
TTTTGTCCCACTAAGAATAATCCAATAAATCAATCCTCACTGCAAAATAT
TTACttttttttcatccccactgaattttctgacttgaaaacaaaagaat
tgaaatccccagcaataagaaatatgggaatatcaatccc Coding sequence (CDS) from alignment at scaffold_189:309981..311720 >TCONS_00050863 ID=TCONS_00050863|Name=TCONS_00050863|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_189:309981..311720 (Clytia hemisphaerica)
TCAGATATTAAGGTGATCAAAAGAGTCTTCCTTTTCCAGTGTTGGGCCAC
GAAAACCGTAGTCATCATAAACATTTGCTGGTGAAATAGCTTCCAATATG
TGGACCTCCTTGTTATAATAATTTGGATTAACTATCTCTTCAATATCTAC
ATGTCCGTCTGAAGTCTTCTCTCCTTTGGCATGTTCAGTTCTAAAGCAAT
AGAACCATACCACAAAACCAATGCTTGCCACAGCTAGTGGTGCGAGGAGt
atcaaaaaataatgattatTGAATGAGGTATCTATTTCACAGTTTCCTTG
TTCACTGAATTCATAACATTCGCCATTTTTCAGACATTGTTTGATTTGGT
ATCTATAAATATTATTCTGTTTGATGGTGACCGACTTCGAAGCTGTTGTC
AACGTTTGAACCGGTGTATTGCTGTCATCATCAAATATATTGATTTGATA
TTTGAGAATGTTTCTTGGGTATTCTAGAAATTCATCTTTAACTTTCCAAG
TTAATACAGCTTTTTCATCGTCTCCTTTGCACGATGAACTTGCTATCTGG
AAATGCTCAAATAACAAATCTCGATCAAGTGTAACATTTTTGCATGTCTT
TGGTAATTGATATTGATCGGCACAATAGTTGATTTCCGTTTTAACGCATA
TCCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050863-exon-scaffold_189-1491911889:309981..311720 | TCONS_00050863-exon-scaffold_189-1491911889:309981..311720 | Clytia hemisphaerica | exon |
| TCONS_00050863-exon-scaffold_189-1510915933:309981..311720 | TCONS_00050863-exon-scaffold_189-1510915933:309981..311720 | Clytia hemisphaerica | exon |
| TCONS_00050863-exon-scaffold_189-1575043694:309981..311720 | TCONS_00050863-exon-scaffold_189-1575043694:309981..311720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:309981..311720 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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