TCONS_00050866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050866
Unique NameTCONS_00050866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050866 ID=TCONS_00050866|Name=TCONS_00050866|organism=Clytia hemisphaerica|type=transcript|length=576bp
gtaataattatgtatggttttatcattgtttttctgctggaaaAGTTAGG
ATCTTATTTCTGCTGACATCAAAATGTCAAAGAAAATCTCTTTTTCAAAA
GATCATCTTTGAGATACATCTTCGGTTAAAGTTCNTTCTGCTGACATCAA
AATGTCAAAGAAAATCTCTTTTTCAAAAGATCATCTTTGAGATACATCTT
CGGTTAAAGTTCAAATGGAATTGAATGAACCAAAGAAATTTCTATGAATC
ATTGATTATGACCTCATACTGCGTCATGATcagtttttgccatttttgca
aaaatgagcgaaaaagcaattaggttacacatcaggttagaaaatacatc
atagtacccttcatgttcagtcatttgtttggtaaTTTTCTGTTGACTAA
tgcaatctaaaaattatggtaattttaaaaCATGTAATTGGGGTCAATAC
ACAATAGTCGTTGGGGAGAACCCAATAGTGTTTTGAATAATTGATAATTA
TTACAGTAGAAATCTTTTTAATGATAATATATGTCATcttattgatttgt
cttttacaacaaAGCAGTTACCTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_189:368509..369084

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050866 ID=TCONS_00050866|Name=TCONS_00050866|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at scaffold_189:368509..369084 (Clytia hemisphaerica)
CCTAGGTAACTGCTttgttgtaaaagacaaatcaataagATGACATATAT
TATCATTAAAAAGATTTCTACTGTAATAATTATCAATTATTCAAAACACT
ATTGGGTTCTCCCCAACGACTATTGTGTATTGACCCCAATTACATGtttt
aaaattaccataatttttagattgcaTTAGTCAACAGAAAAttaccaaac
aaatgactgaacatgaagggtactatgatgtattttctaacctgatgtgt
aacctaattgctttttcgctcatttttgcaaaaatggcaaaaactgATCA
TGACGCAGTATGAGGTCATAATCAATGATTCATAGAAATTTCTTTGGTTC
ATTCAATTCCATTTGAACTTTAACCGAAGATGTATCTCAAAGATGATCTT
TTGAAAAAGAGATTTTCTTTGACATTTTGATGTCAGCAGAANGAACTTTA
ACCGAAGATGTATCTCAAAGATGATCTTTTGAAAAAGAGATTTTCTTTGA
CATTTTGATGTCAGCAGAAATAAGATCCTAACTtttccagcagaaaaaca
atgataaaaccatacataattattac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032236XLOC_032236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050866-exon-scaffold_189-1491911889:368509..369084TCONS_00050866-exon-scaffold_189-1491911889:368509..369084Clytia hemisphaericaexon
TCONS_00050866-exon-scaffold_189-1510915933:368509..369084TCONS_00050866-exon-scaffold_189-1510915933:368509..369084Clytia hemisphaericaexon
TCONS_00050866-exon-scaffold_189-1575043694:368509..369084TCONS_00050866-exon-scaffold_189-1575043694:368509..369084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:368509..369084 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193339	0	0.812096	0.760898	0.165017	0.221241	0.251771	0.373274	0.0819697	0.100903	0	0	0.258188	0.0667678	0.0548922	0.176723	0.580556	0.0748472	0.102762	0	0.186931	0.136768	0	0.302307	0	0.09263	0	0	0	0.221226
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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