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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050884 ID=TCONS_00050884|Name=TCONS_00050884|organism=Clytia hemisphaerica|type=transcript|length=1404bp
cttttaaatctttagTCAATCATTTTATGTAACGCATAGTAAGTAAGCTA
AGAAAGTTATACAAAGTtacaaaagtttaaagaaaaattataaagtGCCT
CAGCACTCAGGGAAAAATCacattataaaattatacaagaCTAACAGTTT
TAAACGATTTGATTATGGCAACTTCGAGCGTGGGAAAAATACTCAGGCAA
CCAATTACCCAACGTTTGTTGAACTCATCCTTCGCGCTGCATCAAGGAAG
CAAATTGACGTCACAGGCTAGTCGACGTATGAATGATTACTACCTGTCGT
TCATCAATGATTCCTGTGCATGCCCATACGTTACTAAAGGACAGTATATG
TCAAGCGTGCTTACAGACCATCGTGACATTAAACAAGCACAAGGACTTCT
GTTCAACAACTATAGTGAACGTCACTGGTGCTGGTCGAATGAAAATCCAA
CTGGATTTCAAGTCAAACAATCGTCCAGTATGAATTACGTCATCGATAAA
TTCGACAAAGATAGCGCCATGTGGTTCGGTACTTTCGATGAAGATCAACT
CGTTACTGCAATCAGACTTTGCTTCCGAACAACCGAAAATCCCCTTATGG
ACATCGAGCTTTACCAACAATCACCAGAAAAGCTGGAGCTTCACAACGCA
TTACGTCGGGATAACGTCGTCGAGATTAGTCGTTTCGTAACGGCGCCACA
ATACCGCTCAAATGGTATCGGAGGCACCTTATCACTTCTCTCCATGTTTA
TGTTTCTATCCAAATACAATTACACAGCCATTTTTACCTCACAGCTAGAC
TTTTTCGGTAAATATGGTATCGGTACTTTGTTGGACCGTACTTTTGACTA
TGGTGATGGAATCCATACTAAAGCTTGGTTTTACTCACGTGATGATGTTG
AAGAAATTGCCACGATGCTGAAGAAAAAAGTCAACAAATGAGAAGACTAT
AATATCTAATGACAAGGTAGTGGTTACAGGGGAAATTCCTAATTGTCAAA
GAACGTCAAAGATATTTATCAATCAATGAGTTTACCAACTTTCTTTATTA
AGGCTAGCTAAGCAGCTAAAAATGAGATCCAAACTTTCGATGATTTGATC
TCATTTAGTTGATGGCCATCCATCTGGTGGCATTGCCCAGATTTCTTTCC
TCTGGCAAACTGTTAAAGGTATAGTCAATTCTACACACTAGTTTTGTGTA
CCCCGAGAATAACAATTTCATATTTAAATATGAAGGAATGCAAAAGCAAT
TCCTGTTTCAAATGGAATCTCCCCTTCAGCAAAGGGAAACAATACTGCAA
GtaggacacccctgtctcgtaGCCCGGGTGGAATTTTTCCTCACATCGAA
ATCGCCTAATGGagggaaattctattgttcccagctCAAAAGAGTCCAGt
gggg Run BLAST on NCBI protein sequence of TCONS_00050884-protein >TCONS_00050884-protein ID=TCONS_00050884-protein|Name=TCONS_00050884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MATSSVGKILRQPITQRLLNSSFALHQGSKLTSQASRRMNDYYLSFINDS
CACPYVTKGQYMSSVLTDHRDIKQAQGLLFNNYSERHWCWSNENPTGFQV
KQSSSMNYVIDKFDKDSAMWFGTFDEDQLVTAIRLCFRTTENPLMDIELY
QQSPEKLELHNALRRDNVVEISRFVTAPQYRSNGIGGTLSLLSMFMFLSK
YNYTAIFTSQLDFFGKYGIGTLLDRTFDYGDGIHTKAWFYSRDDVEEIAT
MLKKKVNK Run BLAST on NCBI transcript from alignment at scaffold_19:624217..627046+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050884 ID=TCONS_00050884|Name=TCONS_00050884|organism=Clytia hemisphaerica|type=transcript|length=2830bp|location=Sequence derived from alignment at scaffold_19:624217..627046+ (Clytia hemisphaerica)
cttttaaatctttagTCAATCATTTTATGTAACGCATAGTAAGTAAGCTA
AGAAAGTTATACAAAGTtacaaaagtttaaagaaaaattataaagtGCCT
CAGCACTCAGGGAAAAATCacattataaaattatacaagaCTAACAGTTT
TAAACGATTTGATTATGGCAACTTCGAGCGTGGGAAAAATACTCAGGCAA
CCAATTACCCAACGTTTGTTGAACTCATCCTTCGCGCTGCATCAAGGAAG
CAAATTGACGTCACAGGCTAGTCGACGTATGAATGATTACTACCTGTCGT
TCATCAATGATTCCTGTGCATGCCCATACGTTACTAAAGGACAGTATATG
TCAAGCGTGCTTACAGACCATCGTGACATTAAACAAGCACAAGGACTTCT
GTTCAACAACTATAGTGAACGTCACTGGTGCTGGTCGAATGAAAATCCAA
CTGGTGAGTTAATTCAGTTTTTTTCGCATTCCCCAGGCTCTTATTCTGTC
ACAAACCAATACCcttgagggaagaaattttagcgggaagaaattttcgc
agaatTTGATTTCATGGGTGCTCCGCAAAATTGAATTTCGGGATTTAAGA
AATCACCTCTCAAATTGGTCTTTTCGCAAAATAGGCcataatgtaaacaa
aaattctttcaacggCGAAATTtccgaattttgagctgtgaacagcgaaa
ttaaattccacgaaaatGTATAGGGAGCTATCttcgttcgagttaaggaa
atttcaagttaatGAGTAAAAGTTGATACGGTATTGTTAACGGAAGGGAC
CATAAAAATGAGACATTTCATTTATACAGGTGCGAATGAAATAGATAGAA
TCGCTTTACTGCTCTCTGTTATTCATGTGTGAAAGAAGTCCGTTAAATCG
GACCGCCCAACCTTTCAAACACTTTGGTTTTTAGTTTTTACTCTTTTTTC
TCGATAGTAGCACAATTTTCGATCCAATATAGGCAATCTGCACATGGGAC
TGAATAATTTTACTTCTTTTGCTAGAAAACACCCAAATCATTAGAAATTC
CGGGCAAATACAAAAAATACATATAAGAAAAAGCGCATAAAAAAGGCGGT
GAATTGTCCTATATTATATCTCGTGATTTTTAAGTAATCGGCCTAATTAA
TTCATAATGAAAACTACTATTTAAAGATAACAGCTTGAACTAAGATCACA
GTTTTAATCACTCCACGGGTACTTATCCTTAGTTTATAAAAAACCTCATC
CTTCTTACATCCTTAAGTGTTTTTTCTTAAGTCAAAGAACATAACGTGAG
CATGTTCTAAAAGGAAAACCTGCTAAGTAAAAGTTTGCGTTTGAAGGGAA
AAATTTACTGCTTTAGATAGAACAAACATCTGTTAACTTTCTTTTCGCGG
CAACGGTTTTATCTACAACATGATTACTAAATTCGCTCTGTAGGTCTTAT
CTCCTTGACAATTTATTGACATGGGATGGTGGTGGGATGGTGGGTAAAGG
AACTTTGATCCTTGTTCAGTTTCCTGATTTGCAGCTCTTGCTGTGAGAAC
GGTTTTGcaaataattttcctttctCCTTTCTTTCTTGGCAAAAAACAGC
ATGATAGTGTTTCGGTACGTGAGTCTGATAAAGTGCGTAGTGGAAACCAA
GCCTTCTGAGAAAGAAAAGTTAATTGAGAGTAACCTAATGATATCCTGTA
GCTGAAACAcgagttgaaaaatttctttgtaTTGCTATTGTTGGGGCTGA
AGGCTAAGGAAATACCACGTGTCTTTTTGGAGTGAACAATCAAcatcctt
aaattttattttacaaaaatattgatattggCTCTTTCTTAGGACCCAAT
TTTTACCCTTTCTCCTCTTTTTATTGCAGGATTTCAAGTCAAACAATCGT
CCAGTATGAATTACGTCATCGATAAATTCGACAAAGATAGCGCCATGTGG
TTCGGTACTTTCGATGAAGATCAACTCGTTACTGCAATCAGACTTTGCTT
CCGAACAACCGAAAATCCCCTTATGGACATCGAGCTTTACCAACAATCAC
CAGAAAAGCTGGAGCTTCACAACGCATTACGTCGGGATAACGTCGTCGAG
ATTAGTCGTTTCGTAACGGCGCCACAATACCGCTCAAATGGTATCGGAGG
CACCTTATCACTTCTCTCCATGTTTATGTTTCTATCCAAATACAATTACA
CAGCCATTTTTACCTCACAGCTAGACTTTTTCGGTAAATATGGTATCGGT
ACTTTGTTGGACCGTACTTTTGACTATGGTGATGGAATCCATACTAAAGC
TTGGTTTTACTCACGTGATGATGTTGAAGAAATTGCCACGATGCTGAAGA
AAAAAGTCAACAAATGAGAAGACTATAATATCTAATGACAAGGTAGTGGT
TACAGGGGAAATTCCTAATTGTCAAAGAACGTCAAAGATATTTATCAATC
AATGAGTTTACCAACTTTCTTTATTAAGGCTAGCTAAGCAGCTAAAAATG
AGATCCAAACTTTCGATGATTTGATCTCATTTAGTTGATGGCCATCCATC
TGGTGGCATTGCCCAGATTTCTTTCCTCTGGCAAACTGTTAAAGGTATAG
TCAATTCTACACACTAGTTTTGTGTACCCCGAGAATAACAATTTCATATT
TAAATATGAAGGAATGCAAAAGCAATTCCTGTTTCAAATGGAATCTCCCC
TTCAGCAAAGGGAAACAATACTGCAAGtaggacacccctgtctcgtaGCC
CGGGTGGAATTTTTCCTCACATCGAAATCGCCTAATGGagggaaattcta
ttgttcccagctCAAAAGAGTCCAGtgggg Coding sequence (CDS) from alignment at scaffold_19:624217..627046+ >TCONS_00050884 ID=TCONS_00050884|Name=TCONS_00050884|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_19:624217..627046+ (Clytia hemisphaerica)
ATGGCAACTTCGAGCGTGGGAAAAATACTCAGGCAACCAATTACCCAACG
TTTGTTGAACTCATCCTTCGCGCTGCATCAAGGAAGCAAATTGACGTCAC
AGGCTAGTCGACGTATGAATGATTACTACCTGTCGTTCATCAATGATTCC
TGTGCATGCCCATACGTTACTAAAGGACAGTATATGTCAAGCGTGCTTAC
AGACCATCGTGACATTAAACAAGCACAAGGACTTCTGTTCAACAACTATA
GTGAACGTCACTGGTGCTGGTCGAATGAAAATCCAACTGGATTTCAAGTC
AAACAATCGTCCAGTATGAATTACGTCATCGATAAATTCGACAAAGATAG
CGCCATGTGGTTCGGTACTTTCGATGAAGATCAACTCGTTACTGCAATCA
GACTTTGCTTCCGAACAACCGAAAATCCCCTTATGGACATCGAGCTTTAC
CAACAATCACCAGAAAAGCTGGAGCTTCACAACGCATTACGTCGGGATAA
CGTCGTCGAGATTAGTCGTTTCGTAACGGCGCCACAATACCGCTCAAATG
GTATCGGAGGCACCTTATCACTTCTCTCCATGTTTATGTTTCTATCCAAA
TACAATTACACAGCCATTTTTACCTCACAGCTAGACTTTTTCGGTAAATA
TGGTATCGGTACTTTGTTGGACCGTACTTTTGACTATGGTGATGGAATCC
ATACTAAAGCTTGGTTTTACTCACGTGATGATGTTGAAGAAATTGCCACG
ATGCTGAAGAAAAAAGTCAACAAATGAATGGCAACTTCGAGCGTGGGAAA
AATACTCAGGCAACCAATTACCCAACGTTTGTTGAACTCATCCTTCGCGC
TGCATCAAGGAAGCAAATTGACGTCACAGGCTAGTCGACGTATGAATGAT
TACTACCTGTCGTTCATCAATGATTCCTGTGCATGCCCATACGTTACTAA
AGGACAGTATATGTCAAGCGTGCTTACAGACCATCGTGACATTAAACAAG
CACAAGGACTTCTGTTCAACAACTATAGTGAACGTCACTGGTGCTGGTCG
AATGAAAATCCAACTGGATTTCAAGTCAAACAATCGTCCAGTATGAATTA
CGTCATCGATAAATTCGACAAAGATAGCGCCATGTGGTTCGGTACTTTCG
ATGAAGATCAACTCGTTACTGCAATCAGACTTTGCTTCCGAACAACCGAA
AATCCCCTTATGGACATCGAGCTTTACCAACAATCACCAGAAAAGCTGGA
GCTTCACAACGCATTACGTCGGGATAACGTCGTCGAGATTAGTCGTTTCG
TAACGGCGCCACAATACCGCTCAAATGGTATCGGAGGCACCTTATCACTT
CTCTCCATGTTTATGTTTCTATCCAAATACAATTACACAGCCATTTTTAC
CTCACAGCTAGACTTTTTCGGTAAATATGGTATCGGTACTTTGTTGGACC
GTACTTTTGACTATGGTGATGGAATCCATACTAAAGCTTGGTTTTACTCA
CGTGATGATGTTGAAGAAATTGCCACGATGCTGAAGAAAAAAGTCAACAA
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050884-exon-scaffold_19-1491911889:624217..624669 | TCONS_00050884-exon-scaffold_19-1491911889:624217..624669 | Clytia hemisphaerica | exon |
| TCONS_00050884-exon-scaffold_19-1510915933:624217..624669 | TCONS_00050884-exon-scaffold_19-1510915933:624217..624669 | Clytia hemisphaerica | exon |
| TCONS_00050884-exon-scaffold_19-1575043694:624217..624669 | TCONS_00050884-exon-scaffold_19-1575043694:624217..624669 | Clytia hemisphaerica | exon |
| TCONS_00050884-exon-scaffold_19-1491911889:626096..627046 | TCONS_00050884-exon-scaffold_19-1491911889:626096..627046 | Clytia hemisphaerica | exon |
| TCONS_00050884-exon-scaffold_19-1510915933:626096..627046 | TCONS_00050884-exon-scaffold_19-1510915933:626096..627046 | Clytia hemisphaerica | exon |
| TCONS_00050884-exon-scaffold_19-1575043694:626096..627046 | TCONS_00050884-exon-scaffold_19-1575043694:626096..627046 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_19 | supercontig | scaffold_19:624217..627046 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR016181 | Acyl_CoA_acyltransferase |
Blast
The following BLAST results are available for this feature:
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