TCONS_00050885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050885
Unique NameTCONS_00050885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050885 ID=TCONS_00050885|Name=TCONS_00050885|organism=Clytia hemisphaerica|type=transcript|length=1192bp
GTTATCTTTAGAAACTGAACTCACTTCCAATATATATTACTGGTGATCTG
GTAGAAGAGATGATTGTGTCTGTCTCACCACGGAAGGAGATTGCATCTTA
TTTTGACTTGGCGTCACCAAAGATACTTGATACAGAGCCATACATCAAAC
AGTACAAAATCAAGCAACGCACCAGAAGTACTGACAACCTACTGCTTGAG
AGGACCAAGGAAGAAAAGTCCAACAAGCCTTTAAAAGcTCAACTAAGGCT
CTCATTTCACGAAGATATCAATTCATTTTGTGAAGAGAATCAAAACTTTG
AAGTTCCATCACCTTCCTATTATCAAAGTCTCTCAGATTGTCGGAATCAC
CAAAAGTTTTTCGGCTCACATGTAAAAAATACTCATGCTCGAACTTTAAG
CGCGCGTGAAACCCGACGTCCCTCGACAAACCACCGACAGAAATTCACCA
ATCAAAAATCATTTGACGAGTCTTTAGCCAATAGGAGGCTTTACAAGATT
CGTAAGAGCCAATCAGTGGACGAGTTAGAGCGGTCACCTGTTTCACCGAT
CAAAGAACATGAAAGTTTCACATTcgattcaaaattgaaaatcaaaccgA
TTAATTCAAGTAGAATGGAACCGACAAAAAAGGAGTCAAGTATTTTAACG
CAACGAATGACGATCGCTGAAGAAAAGAAAACTAAACGTATGTTGTTGAT
GAAAGCTCTGGACAAAGATTGTTTAAAAGCACAAGAACTGATTGCTAAGC
TCAAGTTGAGATTCACCAGTCAGGAAAAGCCTGATACGTAACAGCAGTAT
AAATATTTAATGGTGAGTAAAGAAGTTGCTAAAGGGATTGGCGCACGTAG
GCCACCAACGCCAAAATTCCGACGCATTGTTTTCGCCGTCAATAACAACA
GCATTAATCGCAAAGATCCTTAAATTTTTTCACCGGattgaactaatttt
gacacCGGATTACTGacgtttttttcttcaaacatcgaaagactgaaaga
aaaaaagctgataCCAGGAGGCATATTCGATAGGTTTTACTTCAAACGTG
GTGTTATTTTGAAAAGCACATGGTTGAAGCGTTTTGGATGAGAAATAATC
GGCATCATTTCCCATCTAAGAATTTTCGGATCCAACACCTTCGGGGCTTT
GAAACCAATGCATCACACTATCATACCAATTCACCCCTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00050885-protein

>TCONS_00050885-protein ID=TCONS_00050885-protein|Name=TCONS_00050885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MIVSVSPRKEIASYFDLASPKILDTEPYIKQYKIKQRTRSTDNLLLERTK
EEKSNKPLKAQLRLSFHEDINSFCEENQNFEVPSPSYYQSLSDCRNHQKF
FGSHVKNTHARTLSARETRRPSTNHRQKFTNQKSFDESLANRRLYKIRKS
QSVDELERSPVSPIKEHESFTFDSKLKIKPINSSRMEPTKKESSILTQRM
TIAEEKKTKRMLLMKALDKDCLKAQELIAKLKLRFTSQEKPDT
Run BLAST on NCBI

transcript from alignment at scaffold_19:643030..658595+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050885 ID=TCONS_00050885|Name=TCONS_00050885|organism=Clytia hemisphaerica|type=transcript|length=15566bp|location=Sequence derived from alignment at scaffold_19:643030..658595+ (Clytia hemisphaerica)
GTTATCTTTAGAAACTGAACTCACTTCCAATATATATTACTGGTGATCTG
GTAGAAGAGATGATTGTGTCTGGTAAGTTGGTGTTGGTTAATGACAGCAG
ATATTGATACCCTGTCTCTTTGACCGGGCGAAAATTTGTCAAATCAAtct
tattaaaaataaaagaaatggaATGCTAAAAGATCAGTTGGGATGGAGTT
GGGATTCTAATGTTTAATTAAATACTATTTATAGATGTAATTAAGTAATT
ATCCATAAAGCAGGGTTATTCccaaaagttcatttttgtcTGGTATCAAT
TCAGGGTAGATTTCCAAAAGTGGGGATTTCTTGGGTATTTTTCTCATTGC
ATTACAAAGGAATTAATTACTTTAGAATTTGTAGAAAAAGGATCCTACTT
GATAAGAAAACTTCATTCGCTTTAAGTATGTAagatttttttcccttttt
ggaAACTTTGTGGGCATAAATAAACTGATTTTCTAGTCTCACCACGGAAG
GAGATTGCATCTTATTTTGACTTGGCGTCACCAAAGATACTTGATACAGA
GCCATACATCAAACAGTACAAAATCAAGCAACGCACCAGAAGTACTGACA
ACCTACTGCTTGAGAGGACCAAGGTTAGTGTGTTAAGTTAATATTTTGca
atctcgtacccagggcCACTTGCATCACTTTTAGATTTTACTGTTCGATG
TGATACAATCGTGAGCACTATGAGaaacttaaagggataatcagatggtt
tgagatattttgcctatagatagcttctaggattttaggaaaaacttcta
aatttttcggtgtacttattttcctagctcaagttatgccactttgaaat
tttgaacctttgcttgaaaacaatagaaaaaagtgtgaaaagtccctgaa
aagtctcatttttcgagatttcaaattggcataacttgagttaggaaaat
aagtacaccgacaaatttagaggtttttcctaaaatcctagaagctatct
gcaggtaaaatatctcaaaccatctgattatcccatTAAAAAAGCGAACT
AAGGGACTTAATTCGAGTTAGTTTTttcttaaggtggtagtctaccgcca
gatttcaaaagtcaaaaaatcacatttttagcaataactcaagaacttct
ttacatttcgtaatgaaattttcaggaaatgtatatcaactattaacatt
tctaaaaataaaaaaaaattctaaaaataaccaaagacgggggtaaaatc
agccagggggtaaaatactttactttgcttgtgtcaggttttctgaatag
tcggcttgacttatgaagttagttttttttttaaatgactaatatttaca
aaaggtctggaatgagtgaaaagaaaaattaaaatttttttccagggggt
aagaaactgaaaaaaacgcttttttgagattaaaaatcaggaaaccaatt
ttaaaactttttaatccaTTCATTCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTCACatagacttgaat
tgacaatgagcTGGCTTGATCGAAGGCGGCGCCTTCGCTTCAGTTACCGC
CTAGGCGGTTATGAATGGCTGGTGTCAGATGAGAGTGTGTCTCCAGAAGT
TAggtccagttcattataatgcacatttctatctctgttacatcatgttg
tgcttggaaatatctcagttACATTTAAATCCACTACAAAACATTATGTG
AGCCACAAAGCACACTGTCtatgctcaaaacaaaatgccgacaacttaaa
tgtttttcgcAGAAATCCAGCAACACAACTTTATAGATTCTGTAGAGTCC
ATTCTTCatttaaataaatcatttcaatcaaagagattaagttttgatct
aaaacTTGCCAAGAAATCTGCAGAATCATGCTTACAGCTTCCTTTTCAAC
TGGTTTTGATGAGTTACACTACTGcagctaccatctttaatttcaaggat
tacgtaatgccacggaaaataatatttcgacgcccgaaaagggcggaaaa
agagctttcttttggCGTATCACATTGCTATGTTTCGGCCGAGATTGAAG
AAATAAGTCCTTAGCAACGGGATTTTTTCTGTTGCTAGGGCGATTTTTCA
AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaggagatgttcagaaagacctaaggatctcaaaacacccaaaaacc
agaattcgacaattttttcgatgattttttatttttgggtagactaccac
cttaaaaaTTCAAATGTTAGAGAGTATTTGTGATGCCGAAGAGATCaaga
taaagtttttttttagtatttttcatGCTGGTAAATATAATAATTTGCTT
AGAATTAGGGTAATTCATACTTTAAGGCTAAGCTATACGAAAAAACCTGC
TGATCTTGAAAGTAATGCGAATATTTTACTTGGACTATCATAAACATGTA
GACCATTCGTATTAATTTTTGATGTCAAAGGCGGTTCTAAATTTATTGTC
TGCACAATATCTAAATTTTCAGAAAGaagacattttattttcaactgacG
CGCGCTGATTTGTTTCGACAATTTTTGCAAGCTTGGCATATTTTCATAGC
GATTCCGAAATTCTCTCAAATAACCGTTAATTTAGCTTTAAGGATAACCC
CGAAtgttaattcatgatatgtaccatCGCAGTCTTCCACGGaccaaaca
gctgattggtcAAAAGTGACGTCTTAACTGATCTtatgtcacttacaacc
aatcagctacaGTATTGAGTCCgtaatgtaatgtcagaagacattgtaat
ggtgcatatcatgaatatcttGATGATGTCATGGTAGTAGAATAAGTAGC
AATGTGCTGATTACCGTTCTTTATAGCTAAagttaatatttttctttaaa
attttatcgATTCTATAtgcattttaaatttcaactaTTAAAGCTTTCAT
CTTCACTTTACTAAGGAgggatttaaatatttttttgctttccaTGTTTT
AGGAAGAAAAGTCCAACAAGCCTTTAAAAGGTATGTTAAAAGGATTGCTT
CAATTAGAATTTTAAGTCATTttaatataaaatttgaaacaattttttcg
TACAAAAGAtttcacgccaatttttttctttttggtaggGACCCATTGCC
TCGGAATCATTATCCATAAAGTTTCTCGATAATATGTTTCCTACGTCACT
TATTCTCGTTTATCGATAGTTATAGCATTTATGTttagtctattcacgat
aagtgtgcactcttttttcttttacctataacttttgaaggaattcttca
atctttataaatttggtatcattggtaAAATATTAGCGAGtggaataatt
tgaaataaaaaaatctttaaaaaaattctaaaaattaagatgaaaatgaa
gaagaaaaaaatgaagatcttgaagaaaaaagctataacactatcatttt
cactgaagtgaatccttgatcatcgaacgtcatcactgttaaaaaaattc
ccaaaaataatcattcagtcaaaagatatcaaacaaagttattagctgat
tgacgtctaaaaacgctgttttctgcagttttttgctgttttttggggtc
aatcacttattaactttgtatcataactttatattgaataaatatcttAA
TGAAACTTCTTCGCAGTGATGATCttctaagatcaaaaaatctttccagt
gaaaatgaaagttatagcacttttctacaagatcttcatttttttcttct
tcattttcatcttaatttttagaatctttttaaatatttttttatttcga
attgttccactcactaatatctttccaatgacaccaaatttataaagatt
aaagtattccttcaaaagttataggtaaaagaaaaaagagtgcacactta
tcgtcaatagactttttcttttaatttgctttattttattttcataaaat
agcTCAACTAAGGCTCTCATTTCACGAAGATATCAATTCATTTTGTGAAG
AGAATCAAAACTTTGAAGTTCCATCACCTTCCTATTATCAAAGTCTCTCA
GATTGTCGGAATCACCAAAAGTTTTTCGGCTCACATGTAAAAAATACTCA
TGCTCGAACTTTAAGCGCGCGTGAAACCCGACGTCCCTCGACAAACCACC
GACAGAAATTCACCAATCAAAAATCATTTGACGAGTCTTTAGCCAATAGG
AGGCTTTACAAGATTCGTAAGAGCCAATCAGTGGACGAGTTAGAGCGGTC
ACCTGTTTCACCGATCAAAGAACATGAAAGTTTCACATTcgattcaaaat
tgaaaatcaaaccgATTAATTCAAGTAGAATGGAACCGACAAAAAAGGTG
tgtatacatttttttataaaaacataaggcttccataactaaaatattaa
gaacaagttaagaacattctaagggtTTGCGGACTTTAAAACACCAATTT
ATTTTAAgagaatgaaaaaaatagtCAGAAACGTTTGTAATTAAGAACAG
TAttgtttgtgattgatgttgcagagtgctcaatgacaaccagagccaag
taaaatattaaaagatatctttcatcacaaaaattaaaagagtATACTAC
TCCGAGTTTCGTGCTACTGATTTGAAATGGGAAATCATTGACCACGCCCG
CCCTTACATTAATGGCTCAAAACAATGTAATTTGTGCATGACAGAAAAAT
ATCACATTATGACGTCAGAACTTGACTTAATTAATAAACGCTCGGAATTA
ATATCCAAATGCCGTCatataaataaatttcttctaaaaaactttaaagC
AGTCCCACCGGACAAACTACTCTTTTCATTGCACCAATTATctaaatttt
ttaacatttttcagctttttataCATACATCAATTTTTGATTGCAACAAt
tatctcaatttttttaaacatttatcaGCTTTTTAAATAAAGAGAATTTC
TAAATAGgttcattttatttgtacatTTGACAAGTGCAGTAGCACGAAAC
TTGGAGTAGTGTactcttttaatttttgtgatgaaagatatcttttagta
tttttctcttttaatattttattgtaattaagaacatgttactTAAAGGg
attatacggtgttatatacagccgactcgtctgaaactgatgtcagcaaa
attttaataaaagagtcctttcaaatttgtaaataaaaggaagaaaaaaa
tcttgctccacatttttatttattcattaattttctatttatttcgattc
tatttatttcaatctgctgaatcaacatacattatgACTATGTAAAAGNg
ttcattacaaaagattctatttatttcaatctgctgaatcaacatacatt
ataactatgtaaaaggtcaatggctttaagAACACTATTTTCAGGCTTAT
TTCTtcaaatgttaagaacatccgaatgcttcaaagattttggatgttct
tataaaaaatgtgtattctaGTTGCTTTTAGCTGTCACAAAACGTTTGTT
TCTCTAATACATATACATGAAACTCACATGGTTTTGAGCGCTTTTTTTAG
TGAATTGCTGACCCTGTTAGATATTTTTAACTCTAAAAAGGTGACCCTGA
TCAGCATTAACCATTAagatcttaagaattttaaccttacctaatttaaa
gaatttaaagtcacccatagcttttgaattttgaaaaaataatttcgata
ctatgttcccaatagaccgaactaaaaaagtgtcttgggattttttttgg
aattgattttaactctttaaatcctaaattctgtaaaaatatcgataaaa
aagtaaatttaaatgtgattttttcagttatctgtaaattgaggaaaaac
aactcggttagaaataaaatcctaagacacttttgggaatctcataaaaa
aagaatgaagtcgatatctaaatgctataggtgactttaacttcgttaaa
agtagtatggtgtggtaaaattttgtttttttctacatcaatctgaaatt
tttaacgagatgattgctgtttatttgagtaatcagtgaaatgtgtcaaa
aatattactattcaatagaggtgagaataaacatcagctgaattctctct
tttgtctttgttgtttccgaaagagacaattatttgagtaaataatccat
cataagaccaacttggttttgaaattcaaatggttataactctggatcaa
aaaaagatttttatattgcaattttaccaaaatgaaatccagtaactttt
cttccactttgactgaaaaaaaattttttgacaaaaaatcggaaaaaggt
gtacacatataCATTAAGTATGTTTTCAAGAATCTTTGTTCTATTATGAT
TCTTTATGCATTAAgcatttcttttctctttttacaactttttccgggat
tgtctttttcttattttgttttaatttttggcTTGGATAGCATTAAGAGC
AAATTTCTTATGTCATGTTGTTTGATGGTTGTTGATAGGAGTTTGTCATG
GGGGTAAGTCTTAGTCAATACAGAGCATGCATCGGATTTTTCAATATATT
ACGCTTAAAATATCGTATGCTTATATGACGTGCCGTTTgttgcaaaatta
tttttttaaataaaacacaAAAGACAGATGTCGCGAGGTAAAAAACGAAA
ATGTCGTGAGATAAAAAGACGAAAATGTCGCGTgataaaaaacgaaaatg
tCGCGTgctaaaaaaacgaaaatgtcGCGTGCTAAAAAACGAAAATGTCG
CGAGGTAAAAAGACGAAAATGTCGCGTgctaaaaaaacgaaaatgtcGCG
TGCTAAAAAACGAAAATGTCGCGAGGTAAAAAGACGAAAATGTCGCGTGC
TAAAAAAGCGAAAATGTCGCGTGCTAAATAACGAAAATGTCGCGagataa
aaacacaaaaaaatgtaCTTGacaaaataaactaaaaaagactaaactta
aaaatgttgttttagAGTTTATAcagtttttgtaaatattttttattgaa
attactTTAAATATATAGactaattttcatgattttatttatttttctat
tttctttcgAATTGTTgtcataaatttaaatttttagctcaaaattgggt
ctgtaaaatatacaaaagtaaaaaatgaaactgaaaCCGCACAGCTTTCC
AATTCCAGCGTGCTTGacataaataaatcattttttacGGGAAGTGATAA
AACGTGGATTCCGTCCGGATTGCCCCGGATTCTCCCGGATTGCAACGGAT
TGCCACGGATTGCCTCCGGATTGCCACGGATTGCCACGGATTCCCTCTTT
TAAGCCGCGGATTGCCTCTAGAAACGCCGGATTCCCTCTTTTAAGCCCCG
GATTGCCTCTAGAAACGCCGGATTGCCTCTAAAAACGCCGGATTGCCACT
TTTAAGCCCCGGATTACCTCTAGAAACACCGGATTGCCTCTTGGAACGCC
GGATTTCCTCTTTTAAGCCCCGGATTGCCTCTCGAAACGCCGGATTACCT
CTTTTAAGCCCCGGATTGCCGGATTGCCTTTCGGAATCTGTgtgtttgtt
tgattgtttggaATATgttgtatgtgtttttccttaaaatgtgctttTAT
AATTTcgatttatccataaaatttactctcctggaaaaaacgaacagata
tttcaaaaaaatctgccaGCGGCTGCTCTTGTATGGACCAGCCCTGTCAG
ATGGTACAAAATACCTTTGACtcgaaaaatttaagaataaccATATTTTG
ATTTCGCAgagaaatcccctttgtctgaaatattttgtccatgattgtct
gaaaaattgaaaaatcctaATTTATTGTTCTGCAGGGGTTTCTAAAATTA
ACAGAAAACCcttaaaatttacattttaatctcatggttgattgaaattc
gattgacgtttttgcttacgttaatttgtaatttcccgcgaacttgtaat
ttccctcctagcttttgtaatttacNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtactatcca
attaaaactcgattcgcgtttctatgacttttctgagacctctttttaaa
ttttcagattgatttccagtgttaaattgatGTCTTTCAGAactgttaga
atttcaatccaaaccatgagattaaccaggaatcccatgcttgatttcgt
gaaattctggataaattaccctcggtcaaatttcgaaatgttttaaattc
ccctcgttgcactcgggaaatttcaaaaaatttcaaaattgaccgcctcg
ggaaatttatcccgaatttccctcataaccatgagattactagtacaaat
gcAATTCAGACCATGTTGAAGCATTTTGGCCGGCCAAAATtaatcttttt
tgaaatatttcagctTTTATAAAGTTCTAcgtaattttcttcttttttgg
cGAGAACTGCTCTTTCATAGTTGATATACTCCAGTATGGTTCCTATTGAC
ATTATGAACTAGATTAAAACTGAACCATTGTCAGAAACTGGTTATACGAC
AGAGAGAGAACAGCAGAAATCAAGTTGTGACGCGGCTTTCTAATACTATG
CATAAAGTAATACCATggacatataaacgactggacatccatctcctttg
tctttttgtaaaaagggctgctagcttcgttgccgcctcgttaaaagcat
ataaaatgaaacaatagaatttgatgatataccacttgggaataccttgc
taacaacgtcaaaacttcgacaaaagtctctggtGTTCtatcttctcaag
tcttttatctatatcatagcaaagataacagaggcaaaatcgtcgtcagc
ttgtcaaaactccgactaatatttctaaattttgacttaaaagtgtcgaa
taattttaaaaagtgtcacattctaattttgatattcttatgacacaggc
tctcaactttggcaagctatttttttcaagtcataaaaaaatttttggag
tgccaaaagggattcaaaagtattcgcgcagttgaaattctgcatttcag
agttgaaaaatgttgataaaatatattgcagccttgtgaaaaaaatcgaa
aataatgtTTTGTGCATTAGGACATAGGAGTAAtattcaagctctatcaa
tccttttacctaaataattcaaagaaataaaattatgacggaaaattgtc
ggatttttcaattttgaaatacaggcggcaacgaagctcgcttcaaagag
acaataaaagatagatttccagtcgtttatatgttcatggtaatACTAAG
CTTACAAGAAACCATCTTTCAAATAGGAATGATTAGAAACGCATCCTCAA
CACCCCCGGAGTCGTGTGTTTTCAACGACAAAACGAGTCCTCAATGTCTG
TAAGTGGTTCCAAAAGTTAGAAAATACAGTTCCACGTCAATGCGTCATCA
GAATTGCCAATAACATCAGTGGGATAGgagcaatgaagtataagcccgaa
gggctagaactcaatctccttggtaggatttgaagccaacaaatccttgC
CTCGGGGCCAAGGGTGATAAGAACGTTATAAAGAATAATTTTGTTTAATT
TATTAttacttttttggattttaaggattttaaatttttcaaattattta
ttgaACGCCCAGGGAGAGGCGTTCATtaaaggggcgtttattaaataact
ttttttcactttctaCCTCACGACATTTTCACTACTTTTTAGCTCGCGAC
ATTTTCACCACTTTTTAGCTCGCgacatttttaccaattttttagCTCGC
gacatttttaccattttttagcTCGCGATATTTTCACTACTTTTTAGCTC
GCGACATTTTCACTACTTTTTAGCTCGCgacattttcaccattttttagC
TCGCgacatttttaccattttttagcTCGCTACATTTTCACTACTTTTTA
GCTCGCgacattttcaccattttttagCTCGCgacatttttaccattttt
tagcTCGCTacattttcactaatttttagCTCGCGACATTTTCACTACTT
TTTAGCTCGCGACATTTTCACCACTTTTTAGCTCGCTATCTTCTCAAAAT
ATACCAACtcgcaaaaaaataattttgcaacACACCGCACGTCATATGCT
TAATCCCTCCTGTAGTTTTTTCATCTTACTAAATTTCCCTTTTACACTCA
TATTCTTATGCCTTCTTTTGTCCGGAGATATTGAGGTTAACCCTGGGCCG
GAGAGGAAAACCACGCTAAGCATTTGTCATTGGAATCTGAATAGCGTTTG
GGTTGAAGATTCTATGGGAGATTTTATTAAGATTAAACAACTTTCTGCAT
TTCTGAACATTCATAAATTCGACANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
ATGGGCCTACTCATCTCCTTGATAATTCAACTTCTTGCATTGATCTAATT
TTTTCATCAGCTGATCATTTGATTCTGGATACTGGTATCCTCCCATCCTT
GCACCCTAAGTGCCATCACCAGATAACCTTTTGCAagctaaattttaaaa
tccccTTCGCTCCATCTTATGAACGAAAGGTCTGGGACTTCTCCAGAGCA
GATCCCATTCTAATACGAAGGGCGGTAGACATAGTTGACTGGgataggtg
ttttgagggtacTGATATGGATGGCCGGGTCTTCCTCTTGACTGAAACCA
TCATTAATATTGTGTCAAACTTTGTGCCTAATAAAGTCATTACCATCAGG
AATAAGGATGCGGTATGGATGACGGCTGAGATAAAGAGAGCCCTACTTGT
AAAATCGAAAGTTTATGANtagcaacaaaaacaaatatatTTAATCAATT
CTTTGCTAATCAGTGCTCTCTCATAGACACTGATAGTGTTTTACCGCAAC
AAAACTATGTAACTAATCTTAGAATAAATAATATTGCTCTTGATGAAGCC
AAGATCTTAGCCCTCATTCGCGCACTTACGACTAACAAAGCGCATGGCTC
GGATGACATCTCCATACAGATGATTAAAATCTGTGATGAATCCTTGGTTA
AACCTCTTATGAAGATCTATAAATATTCTTtagatttttgcatttttcca
tCTAACTGGAAAAGAGCAAATGTTGTTCCTGTGTATAAAAACAAAGAGGA
CAAGAGCGTGGCAAAAAATTATAGACCAGTGTCTCTtctgcctatttttg
gaaaaatctttgaaaaatgcatCTTTGACTCCGTTTACACCTATTTCGAA
AACANAGATAAGTGagtgggctcatcaatggaaaatGTCCTTCAACCCGA
TCCTTCTAAACAGGCAGTTGAAGTGTACTTTACCCGGAGGTTTAATCCAG
CTGACCCCCCAGAAATTACTTTCAATGATGCAGCCATCGCAGTTCaggat
catcaaaaacatcttggtctcatacttgatcaaaagctggcctttgaccg
tcaccttgatgaaaaaataaaaaaagctaATCAAGGTATTGGTCTTATTA
GCAGACTTCGTAAATTTCTACTCAGGGATTCTCTTGTCACTATATACAAA
ACCTACGTTAGACCACACCTAGATTATGGAGATATCGTATATGATCGTCC
TGGTAATtctacattttctgaaaaaatcgagTCTGTTCAATATGATGCTT
GTCTTGCAATTACTGGATGCTTCAGAGGaacatccagagaaaaaatttac
cTTGAGTTAGGCTTTGAAAGCCTGGCAGACAGGCGATTAATTAGAAGact
cgtatttttttataaaacaataAAAGGCTTTGCTCCTGCTTATCTTACGA
ATATTCTTTCTCCCCAGAGAGGAGAGGAAGAGCGCAATGCAGGGCGAAGG
ATAAAACCACCACTTGAGGTACCTTTCTGTAGAACCGAACGTTATCGTGC
TTCTTTGTTTCCATTTTGcataaatgaatggaataacctCGGATATCATA
TACGAAATCTTCCCACTATTAAGTCTTTCAAGTAAGCTATTCTCCAATTC
CTCAGACCCAGTGCTAACTCAGTTTTCAGAGCTAGTGACAACGATGGCGT
TGTTCTCcttaaccgattaagggttggtttcagtcatctNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccttcctcc
tggcggtatgatctggtggtccttttgcgggaggttaggaacctttagtt
ttgtactatttgttcgtgttacctatactatagataaaaaaaaaaaagac
tcttttacacttttttctttcgaaatctaaaagatttcctaaaaatcgta
aattttccgacccttagagagactagtttagaattttctgatttttccaa
cccttagagagactttgaaaggtgaaaaaacctacccttaccgtctgcac
atacccagTACCTATTTTTACCTCCCCCGGATACACGGCCAGACATTGCC
TaattatctttatttttattctttacaGGAGTCAAGTATTTTAACGCAAC
GAATGACGATCGCTGAAGAAAAGAAAACTAAACGTATGTTGTTGATGAAA
GCTCTGGACAAAGATTGTTTAAAAGCACAAGAACTGATTGCTAAGCTCAA
GTTGAGATTCACCAGTCAGGAAAAGCCTGATACGTAACAGCAGTATAAAT
ATTTAATGGTGAGTAAAGAAGTTGCTAAAGGGATTGGCGCACGTAGGCCA
CCAACGCCAAAATTCCGACGCATTGTTTTCGCCGTCAATAACAACAGCAT
TAATCGCAAAGATCCTTAAATTTTTTCACCGGattgaactaattttgaca
cCGGATTACTGacgtttttttcttcaaacatcgaaagactgaaagaaaaa
aagctgataCCAGGAGGCATATTCGATAGGTTTTACTTCAAACNtttttc
ttcaaaaatcgaaagactgaaagaaaaaaagctgataCCAGGAGGCATAT
TCGATAGGTTTTACTTCAAACGTGGTGTTATTTTGAAAAGCACATGGTTG
AAGCGTTTTGGATGAGAAATAATCGGCATCATTTCCCATCTAAGAATTTT
CGGATCCAACACCTTCGGGGCTTTGAAACCAATGCATCACACTATCATAC
CAATTCACCCCTTAAA

Coding sequence (CDS) from alignment at scaffold_19:643030..658595+

>TCONS_00050885 ID=TCONS_00050885|Name=TCONS_00050885|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at scaffold_19:643030..658595+ (Clytia hemisphaerica)
ATGATTGTGTCTGTCTCACCACGGAAGGAGATTGCATCTTATTTTGACTT
GGCGTCACCAAAGATACTTGATACAGAGCCATACATCAAACAGTACAAAA
TCAAGCAACGCACCAGAAGTACTGACAACCTACTGCTTGAGAGGACCAAG
GAAGAAAAGTCCAACAAGCCTTTAAAAGcTCAACTAAGGCTCTCATTTCA
CGAAGATATCAATTCATTTTGTGAAGAGAATCAAAACTTTGAAGTTCCAT
CACCTTCCTATTATCAAAGTCTCTCAGATTGTCGGAATCACCAAAAGTTT
TTCGGCTCACATGTAAAAAATACTCATGCTCGAACTTTAAGCGCGCGTGA
AACCCGACGTCCCTCGACAAACCACCGACAGAAATTCACCAATCAAAAAT
CATTTGACGAGTCTTTAGCCAATAGGAGGCTTTACAAGATTCGTAAGAGC
CAATCAGTGGACGAGTTAGAGCGGTCACCTGTTTCACCGATCAAAGAACA
TGAAAGTTTCACATTcgattcaaaattgaaaatcaaaccgATTAATTCAA
GTAGAATGGAACCGACAAAAAAGGAGTCAAGTATTTTAACGCAACGAATG
ACGATCGCTGAAGAAAAGAAAACTAAACGTATGTTGTTGATGAAAGCTCT
GGACAAAGATTGTTTAAAAGCACAAGAACTGATTGCTAAGCTCAAGTTGA
GATTCACCAGTCAGGAAAAGCCTGATACGTAAATGATTGTGTCTGTCTCA
CCACGGAAGGAGATTGCATCTTATTTTGACTTGGCGTCACCAAAGATACT
TGATACAGAGCCATACATCAAACAGTACAAAATCAAGCAACGCACCAGAA
GTACTGACAACCTACTGCTTGAGAGGACCAAGGAAGAAAAGTCCAACAAG
CCTTTAAAAGcTCAACTAAGGCTCTCATTTCACGAAGATATCAATTCATT
TTGTGAAGAGAATCAAAACTTTGAAGTTCCATCACCTTCCTATTATCAAA
GTCTCTCAGATTGTCGGAATCACCAAAAGTTTTTCGGCTCACATGTAAAA
AATACTCATGCTCGAACTTTAAGCGCGCGTGAAACCCGACGTCCCTCGAC
AAACCACCGACAGAAATTCACCAATCAAAAATCATTTGACGAGTCTTTAG
CCAATAGGAGGCTTTACAAGATTCGTAAGAGCCAATCAGTGGACGAGTTA
GAGCGGTCACCTGTTTCACCGATCAAAGAACATGAAAGTTTCACATTcga
ttcaaaattgaaaatcaaaccgATTAATTCAAGTAGAATGGAACCGACAA
AAAAGGAGTCAAGTATTTTAACGCAACGAATGACGATCGCTGAAGAAAAG
AAAACTAAACGTATGTTGTTGATGAAAGCTCTGGACAAAGATTGTTTAAA
AGCACAAGAACTGATTGCTAAGCTCAAGTTGAGATTCACCAGTCAGGAAA
AGCCTGATACGTAAATGATTGTGTCTGTCTCACCACGGAAGGAGATTGCA
TCTTATTTTGACTTGGCGTCACCAAAGATACTTGATACAGAGCCATACAT
CAAACAGTACAAAATCAAGCAACGCACCAGAAGTACTGACAACCTACTGC
TTGAGAGGACCAAGGAAGAAAAGTCCAACAAGCCTTTAAAAGcTCAACTA
AGGCTCTCATTTCACGAAGATATCAATTCATTTTGTGAAGAGAATCAAAA
CTTTGAAGTTCCATCACCTTCCTATTATCAAAGTCTCTCAGATTGTCGGA
ATCACCAAAAGTTTTTCGGCTCACATGTAAAAAATACTCATGCTCGAACT
TTAAGCGCGCGTGAAACCCGACGTCCCTCGACAAACCACCGACAGAAATT
CACCAATCAAAAATCATTTGACGAGTCTTTAGCCAATAGGAGGCTTTACA
AGATTCGTAAGAGCCAATCAGTGGACGAGTTAGAGCGGTCACCTGTTTCA
CCGATCAAAGAACATGAAAGTTTCACATTcgattcaaaattgaaaatcaa
accgATTAATTCAAGTAGAATGGAACCGACAAAAAAGGAGTCAAGTATTT
TAACGCAACGAATGACGATCGCTGAAGAAAAGAAAACTAAACGTATGTTG
TTGATGAAAGCTCTGGACAAAGATTGTTTAAAAGCACAAGAACTGATTGC
TAAGCTCAAGTTGAGATTCACCAGTCAGGAAAAGCCTGATACGTAAATGA
TTGTGTCTGTCTCACCACGGAAGGAGATTGCATCTTATTTTGACTTGGCG
TCACCAAAGATACTTGATACAGAGCCATACATCAAACAGTACAAAATCAA
GCAACGCACCAGAAGTACTGACAACCTACTGCTTGAGAGGACCAAGGAAG
AAAAGTCCAACAAGCCTTTAAAAGcTCAACTAAGGCTCTCATTTCACGAA
GATATCAATTCATTTTGTGAAGAGAATCAAAACTTTGAAGTTCCATCACC
TTCCTATTATCAAAGTCTCTCAGATTGTCGGAATCACCAAAAGTTTTTCG
GCTCACATGTAAAAAATACTCATGCTCGAACTTTAAGCGCGCGTGAAACC
CGACGTCCCTCGACAAACCACCGACAGAAATTCACCAATCAAAAATCATT
TGACGAGTCTTTAGCCAATAGGAGGCTTTACAAGATTCGTAAGAGCCAAT
CAGTGGACGAGTTAGAGCGGTCACCTGTTTCACCGATCAAAGAACATGAA
AGTTTCACATTcgattcaaaattgaaaatcaaaccgATTAATTCAAGTAG
AATGGAACCGACAAAAAAGGAGTCAAGTATTTTAACGCAACGAATGACGA
TCGCTGAAGAAAAGAAAACTAAACGTATGTTGTTGATGAAAGCTCTGGAC
AAAGATTGTTTAAAAGCACAAGAACTGATTGCTAAGCTCAAGTTGAGATT
CACCAGTCAGGAAAAGCCTGATACGTAAATGATTGTGTCTGTCTCACCAC
GGAAGGAGATTGCATCTTATTTTGACTTGGCGTCACCAAAGATACTTGAT
ACAGAGCCATACATCAAACAGTACAAAATCAAGCAACGCACCAGAAGTAC
TGACAACCTACTGCTTGAGAGGACCAAGGAAGAAAAGTCCAACAAGCCTT
TAAAAGcTCAACTAAGGCTCTCATTTCACGAAGATATCAATTCATTTTGT
GAAGAGAATCAAAACTTTGAAGTTCCATCACCTTCCTATTATCAAAGTCT
CTCAGATTGTCGGAATCACCAAAAGTTTTTCGGCTCACATGTAAAAAATA
CTCATGCTCGAACTTTAAGCGCGCGTGAAACCCGACGTCCCTCGACAAAC
CACCGACAGAAATTCACCAATCAAAAATCATTTGACGAGTCTTTAGCCAA
TAGGAGGCTTTACAAGATTCGTAAGAGCCAATCAGTGGACGAGTTAGAGC
GGTCACCTGTTTCACCGATCAAAGAACATGAAAGTTTCACATTcgattca
aaattgaaaatcaaaccgATTAATTCAAGTAGAATGGAACCGACAAAAAA
GGAGTCAAGTATTTTAACGCAACGAATGACGATCGCTGAAGAAAAGAAAA
CTAAACGTATGTTGTTGATGAAAGCTCTGGACAAAGATTGTTTAAAAGCA
CAAGAACTGATTGCTAAGCTCAAGTTGAGATTCACCAGTCAGGAAAAGCC
TGATACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032250XLOC_032250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050885-exon-scaffold_19-1491911889:643030..643101TCONS_00050885-exon-scaffold_19-1491911889:643030..643101Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:643030..643101TCONS_00050885-exon-scaffold_19-1510915933:643030..643101Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:643030..643101TCONS_00050885-exon-scaffold_19-1575043694:643030..643101Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1491911889:643516..643652TCONS_00050885-exon-scaffold_19-1491911889:643516..643652Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:643516..643652TCONS_00050885-exon-scaffold_19-1510915933:643516..643652Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:643516..643652TCONS_00050885-exon-scaffold_19-1575043694:643516..643652Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1491911889:646582..646609TCONS_00050885-exon-scaffold_19-1491911889:646582..646609Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:646582..646609TCONS_00050885-exon-scaffold_19-1510915933:646582..646609Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:646582..646609TCONS_00050885-exon-scaffold_19-1575043694:646582..646609Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1491911889:647532..647926TCONS_00050885-exon-scaffold_19-1491911889:647532..647926Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:647532..647926TCONS_00050885-exon-scaffold_19-1510915933:647532..647926Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:647532..647926TCONS_00050885-exon-scaffold_19-1575043694:647532..647926Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1491911889:657958..658358TCONS_00050885-exon-scaffold_19-1491911889:657958..658358Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:657958..658358TCONS_00050885-exon-scaffold_19-1510915933:657958..658358Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:657958..658358TCONS_00050885-exon-scaffold_19-1575043694:657958..658358Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1491911889:658437..658595TCONS_00050885-exon-scaffold_19-1491911889:658437..658595Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1510915933:658437..658595TCONS_00050885-exon-scaffold_19-1510915933:658437..658595Clytia hemisphaericaexon
TCONS_00050885-exon-scaffold_19-1575043694:658437..658595TCONS_00050885-exon-scaffold_19-1575043694:658437..658595Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050885-proteinTCONS_00050885-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:643030..658595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.02082	1.08258	0.486615	0.155591	0.208369	0.273948	5.05217	4.71131	0.96321	0.967693	1.13793	0.860872	9.59146	10.358	1.60518	1.12336	0.744868	1.88109	1.91543	3.10827	0.148465	0.158446	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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