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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050887 ID=TCONS_00050887|Name=TCONS_00050887|organism=Clytia hemisphaerica|type=transcript|length=1874bp
ATTTTATTCTAGTACGTTCGGTCactatttttgacttttaactGTCGAGG
GTAGGGCATAacgtttacatttttttcttcaaaagtttatTTGGTTTGGC
AGGGCTTTCTATACGCACAAGCTTGAAATTGTCTGattttgacgaaaaaa
aatggAACGAAACAGAATGATTCACAGACTTATCCTTCCAACGCTGATCT
TGCTTTCTTCATCTCAAGGGAAAACCATCCAAAACTCTCAAGAAAGCTCT
ACAAGTGCATCGGATCTTACCAATCTCACCGAAGCAGCTGCTACGCCACA
GAGAGATACTCCCGGAAGGGTTCCATGGTTTGCTATGCAAAAGAAAAGTC
TACCATTCCACCCGCGCTTCATGTTTTCACGTgatgctgactcagcaaaa
aacgATGAAAGATTACCATTCAACAGAAGATTCATGTTTTTCGATACCTC
AGTGACAACCAAAAGAGACGAACCTAATCGAGTTCCATGGTTCGCTAAGC
AAAAGAAAAGTCTACCATTCAATCCGCGCTTCATGTTTTCGCGTGATTCC
TTACCATTTAATCACcgttttatgttttttgataGCTCATCAGCATTGAA
AAATTACGTACCCAATCGAGTTCCTTGGTttgcaaaacaaaagaagagct
TTGAAACCAACGATGGTGACGCCCCGAATAGAATCCCTTGGTTCGCCAGC
AGGCAGAAGAAAGACTCACTAGTGCCACTCACGTTTAAAGATGTTCCTAA
CATTGTTAAAGACAACAAAGCTTctaaattttccttcaaaagaaGTGACA
TCACAATCCCCATCACCGAGTATTATTACTCACCAGGACCCGAAAATCTC
GATCGTTACATACCACCTGGAGTCGTCAATCACAATAGGCTTAGTGGTTT
TAAGGACACTGGTAAAAATCTCAAATCTAAAGACGGTAAGAAACCAAGGA
TGGTCATATTTGGAGATGCTGTTTCGAGCGGAGCTGCAACTGAAGAATCT
AGCAATCACCAAGAGGAGAAAGGAAAAGATCACGGAATCCTTCCACCCAA
TTTTATGGGCAGAACGTACCAGAGAGAAGCCAGATCTTCATCCAAATCTT
CATCATCAATACCTTTATCCTTTATTAGAGATAAAGAAAACACCAGAAGT
CTATCAACAATTCCATTAACATTCATTAACAAGAAAGATGAACCCGTCCC
AAATAAAATTCCGTGGTTCGCAGTAAAACGTCAGAAGAAGAGTTTGGCGC
CCGATAGCTTCGAAGACGAGACTAACAATGATGAAGATGGGGAAAGTAAA
GAGTCAAGATATCCTCTTTTTCTCTATAAAGATGCTTCCAATTCGTTCGC
AGACTTCCTAACAACTGCTAAGGATCAACCATCCAATCAAATATCATCTG
ATGTCCATCGCCGCTCCGCGATTCGTCAAATCTTAACCAATCAGCATCAA
ATAAGACGACGCGAGGATAGCCAATTCCCAATCAGATGTGGCAATGTTTC
CGGTTGTGACAAGCGACGCTGTATTAATGGAATATGTAGGATTGTTTGCA
GCAATAAAACATTAGTATGCCTACAATAGACTGTGTAGACAATTTTCAGA
GAATGCGAGAACAAATAGTATGGAATTCGCAGTGcattaaattttcaaca
ttttgacaAATTGAATTCATGGGTTTCCATCAACAAGACTTTAAATATGG
GTAAATAATAATCTTAATTGACAATACATTGTACTTTAATGTTTAGTAGG
TATAATCTAGGGCAGTTTCATTTcaattataattatttttaaatattctt
gATACATATACGATAAAGGATATTTCTTGTATGAATTTAAAGTATGTACT
GAATCTATATTTTTAAGTGACGAT Run BLAST on NCBI protein sequence of TCONS_00050887-protein >TCONS_00050887-protein ID=TCONS_00050887-protein|Name=TCONS_00050887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MERNRMIHRLILPTLILLSSSQGKTIQNSQESSTSASDLTNLTEAAATPQ
RDTPGRVPWFAMQKKSLPFHPRFMFSRDADSAKNDERLPFNRRFMFFDTS
VTTKRDEPNRVPWFAKQKKSLPFNPRFMFSRDSLPFNHRFMFFDSSSALK
NYVPNRVPWFAKQKKSFETNDGDAPNRIPWFASRQKKDSLVPLTFKDVPN
IVKDNKASKFSFKRSDITIPITEYYYSPGPENLDRYIPPGVVNHNRLSGF
KDTGKNLKSKDGKKPRMVIFGDAVSSGAATEESSNHQEEKGKDHGILPPN
FMGRTYQREARSSSKSSSSIPLSFIRDKENTRSLSTIPLTFINKKDEPVP
NKIPWFAVKRQKKSLAPDSFEDETNNDEDGESKESRYPLFLYKDASNSFA
DFLTTAKDQPSNQISSDVHRRSAIRQILTNQHQIRRREDSQFPIRCGNVS
GCDKRRCINGICRIVCSNKTLVCLQ Run BLAST on NCBI transcript from alignment at scaffold_19:660334..663844+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050887 ID=TCONS_00050887|Name=TCONS_00050887|organism=Clytia hemisphaerica|type=transcript|length=3511bp|location=Sequence derived from alignment at scaffold_19:660334..663844+ (Clytia hemisphaerica)
ATTTTATTCTAGTACGTTCGGTCactatttttgacttttaactGTCGAGG
GTAGGGCATAacgtttacatttttttcttcaaaagtttatTTGGTTTGGC
AGGGCTTTCTATACGCACAAGCTTGAAATTGTCTGGTAAGTACCTAATTT
ACAAACTTTAGAAGTTTTTTCACCACCCTGATCCATTTTTTCAGACGCGA
CTTAGTTTCAAATTATCTGAAAATTATTACAATCATAccagacacccctg
tgtcacagacccaatgggaccccagccccactagaAAGTTCGGCAAAAAT
TTGGTCCCCTGTGGGAAATTACCCTGGAgttttcagccccactgggaaat
tgactttgatttcattctcACTCTaaaatcaatgtctaaaaattgcactc
caaaaccatccgcactggattttttaactttgaaacaatagaatttctat
ctccgtactcttgtctcccgaattgACGTCCCCCCCCACCACTTATTGTT
AAGaggaaaaaaatccatcccccgctcttattaagNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactcttgtctcc
cgaatagacgtccccccgctaattgttaagagacaaaaaaatccatcccc
ccgctcttattaagaccccctgctaattaaattcgaatagttcaatattt
tattacagtgtagatagaccttaaacttgttaaaattttcctctttgtta
gtattggttcttattttacgtgtttatttgttaaagtttccttttttgtt
gttaaaattgatatcagtttaaaaaagttctgtcttcaaattagcccctc
ttattccatccccctgcttattagaatttagaagatttttctaccccctg
cttattcggacccccgtctattcgggagataAGAGTAGGGACTTTTTATC
CtcactgaagaaaaaagttccaccggggctgtgagacaggggtgttaccA
TGAAacgttgaaatttttctaactACTCTTACTCACAACGGGAGGcctaa
atattaaaaatagGTCCGATGCTCTTCAAATTCGATTACATACGAATATA
ACGATTTCAAAGCTCGAAGAAGATATTTTAACTGGCTTTAAGTTCTAATG
GTAGAAATTTCCCATAGGGATATAGAAAGATAAATATCATCACCCCCGTT
TGCAATAATAGGTACTCTATTCTAACAACCCGACAAACTAAAAACTCACA
ATTGAGGTATTTACGTTCAGATTATGAGTCGGAGGGAGAGGGGAGGGAGG
AGGAGAGGGGAGGGAGAGGGGAGGGAGGAGGAGAGGGGAGGGAGAGGGGA
GGGAGGAGGAGAggggaggaggaggaggaggaggaggaggcgAGAGAGTC
AAAGACGAGGTCACACACACACACTCTGATCTGAATATGGTCACCTGACA
AATTATAGATAAGAAGAAGAAAtcacgaaaaataaaaataatgttgAGTC
TCTCTAAGGGAAAGAAAACTTTCGAAATAATTCTTTTGACACGTCCAATG
TCGAGCCCTTTTCGGTTTCTGCTAAAACATGACATTTAATGTATGATTTC
TTGCTTTtagattttgacgaaaaaaaatggAACGAAACAGAATGATTCAC
AGACTTATCCTTCCAACGCTGATCTTGCTTTCTTCATCTCAAGGGAAAAC
CATCCAAAACTCTCAAGAAAGCTCTACAAGTGCATCGGATCTTACCAATC
TCACCGAAGCAGCTGCTACGCCACAGAGAGATACTCCCGGAAGGGTTCCA
TGGTTTGCTATGCAAAAGAAAAGTCTACCATTCCACCCGCGCTTCATGTT
TTCACGTgatgctgactcagcaaaaaacgATGAAAGATTACCATTCAACA
GAAGATTCATGTTTTTCGATACCTCAGTGACAACCAAAAGAGACGAACCT
AATCGAGTTCCATGGTTCGCTAAGCAAAAGAAAAGCTTACCATTCCATCC
GCGCTTCATGTTTTCACGtgatgctgaatcagcaaaaaatgaCGAAAGAT
TACCATTCAATCACCGCTTCATGTTTTCCGACATTTCGTCAACTTCGAGA
AGTAACGGGCCTAATCAAGTTCCATGGTTTACCAAGCAAAAGAAAGGTCT
ACCATTCAATCCGCGCTTCATGTTTTCGCGTGATTCCTTACCATTTAATC
ACcgttttatgttttttgataGCTCATCAGCATTGAAAAATTACGTACCC
AATCGAGTTCCTTGGTttgcaaaacaaaagaagagctTTGAAACCAACGA
TGGTGACGCCCCGAATAGAATCCCTTGGTTCGCCAGCAGGCAGAAGAAAG
ACTCACTAGTGCCACTCACGTTTAAAGATGTTCCTAACATTGTTAAAGAC
AACAAAGCTTctaaattttccttcaaaagaaGTGACATCACAATCCCCAT
CACCGAGTATTATTACTCACCAGGACCCGAAAATCTCGATCGTTACATAC
CACCTGGAGTCGTCAATCACAATAGGCTTAGTGGTTTTAAGGACACTGGT
AAAAATCTCAAATCTAAAGACGGTAAGAAACCAAGGATGGTCATATTTGG
AGATGCTGTTTCGAGCGGAGCTGCAACTGAAGAATCTAGCAATCACCAAG
AGGAGAAAGGAAAAGATCACGGAATCCTTCCACCCAATTTTATGGGCAGA
ACGTACCAGAGAGAAGCCAGATCTTCATCCAAATCTTCATCATCAATACC
TTTATCCTTTATTAGAGATAAAGAAAACACCAGAAGTCTATCAACAATTC
CATTAACATTCATTAACAAGAAAGATGAACCCGTCCCAAATAAAATTCCG
TGGTTCGCAGTAAAACGTCAGAAGAAGAGTTTGGCGCCCGATAGCTTCGA
AGACGAGACTAACAATGATGAAGATGGGGAAAGTAAAGAGTCAAGATATC
CTCTTTTTCTCTATAAAGATGCTTCCAATTCGTTCGCAGACTTCCTAACA
ACTGCTAAGGATCAACCATCCAATCAAATATCATCTGATGTCCATCGCCG
CTCCGCGATTCGTCAAATCTTAACCAATCAGCATCAAATAAGACGACGCG
AGGATAGCCAATTCCCAATCAGATGTGGCAATGTTTCCGGTTGTGACAAG
CGACGCTGTATTAATGGAATATGTAGGATTGTTTGCAGCAATAAAACATT
AGTATGCCTACAATAGACTGTGTAGACAATTTTCAGAGAATGCGAGAACA
AATAGTATGGAATTCGCAGTGcattaaattttcaacattttgacaAATTG
AATTCATGGGTTTCCATCAACAAGACTTTAAATATGGGTAAATAATAATC
TTAATTGACAATACATTGTACTTTAATGTTTAGTAGGTATAATCTAGGGC
AGTTTCATTTcaattataattatttttaaatattcttgATACATATACGA
TAAAGGATATTTCTTGTATGAATTTAAAGTATGTACTGAATCTATATTTT
TAAGTGACGAT Coding sequence (CDS) from alignment at scaffold_19:660334..663844+ >TCONS_00050887 ID=TCONS_00050887|Name=TCONS_00050887|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_19:660334..663844+ (Clytia hemisphaerica)
atggAACGAAACAGAATGATTCACAGACTTATCCTTCCAACGCTGATCTT
GCTTTCTTCATCTCAAGGGAAAACCATCCAAAACTCTCAAGAAAGCTCTA
CAAGTGCATCGGATCTTACCAATCTCACCGAAGCAGCTGCTACGCCACAG
AGAGATACTCCCGGAAGGGTTCCATGGTTTGCTATGCAAAAGAAAAGTCT
ACCATTCCACCCGCGCTTCATGTTTTCACGTgatgctgactcagcaaaaa
acgATGAAAGATTACCATTCAACAGAAGATTCATGTTTTTCGATACCTCA
GTGACAACCAAAAGAGACGAACCTAATCGAGTTCCATGGTTCGCTAAGCA
AAAGAAAAGTCTACCATTCAATCCGCGCTTCATGTTTTCGCGTGATTCCT
TACCATTTAATCACcgttttatgttttttgataGCTCATCAGCATTGAAA
AATTACGTACCCAATCGAGTTCCTTGGTttgcaaaacaaaagaagagctT
TGAAACCAACGATGGTGACGCCCCGAATAGAATCCCTTGGTTCGCCAGCA
GGCAGAAGAAAGACTCACTAGTGCCACTCACGTTTAAAGATGTTCCTAAC
ATTGTTAAAGACAACAAAGCTTctaaattttccttcaaaagaaGTGACAT
CACAATCCCCATCACCGAGTATTATTACTCACCAGGACCCGAAAATCTCG
ATCGTTACATACCACCTGGAGTCGTCAATCACAATAGGCTTAGTGGTTTT
AAGGACACTGGTAAAAATCTCAAATCTAAAGACGGTAAGAAACCAAGGAT
GGTCATATTTGGAGATGCTGTTTCGAGCGGAGCTGCAACTGAAGAATCTA
GCAATCACCAAGAGGAGAAAGGAAAAGATCACGGAATCCTTCCACCCAAT
TTTATGGGCAGAACGTACCAGAGAGAAGCCAGATCTTCATCCAAATCTTC
ATCATCAATACCTTTATCCTTTATTAGAGATAAAGAAAACACCAGAAGTC
TATCAACAATTCCATTAACATTCATTAACAAGAAAGATGAACCCGTCCCA
AATAAAATTCCGTGGTTCGCAGTAAAACGTCAGAAGAAGAGTTTGGCGCC
CGATAGCTTCGAAGACGAGACTAACAATGATGAAGATGGGGAAAGTAAAG
AGTCAAGATATCCTCTTTTTCTCTATAAAGATGCTTCCAATTCGTTCGCA
GACTTCCTAACAACTGCTAAGGATCAACCATCCAATCAAATATCATCTGA
TGTCCATCGCCGCTCCGCGATTCGTCAAATCTTAACCAATCAGCATCAAA
TAAGACGACGCGAGGATAGCCAATTCCCAATCAGATGTGGCAATGTTTCC
GGTTGTGACAAGCGACGCTGTATTAATGGAATATGTAGGATTGTTTGCAG
CAATAAAACATTAGTATGCCTACAATAGatggAACGAAACAGAATGATTC
ACAGACTTATCCTTCCAACGCTGATCTTGCTTTCTTCATCTCAAGGGAAA
ACCATCCAAAACTCTCAAGAAAGCTCTACAAGTGCATCGGATCTTACCAA
TCTCACCGAAGCAGCTGCTACGCCACAGAGAGATACTCCCGGAAGGGTTC
CATGGTTTGCTATGCAAAAGAAAAGTCTACCATTCCACCCGCGCTTCATG
TTTTCACGTgatgctgactcagcaaaaaacgATGAAAGATTACCATTCAA
CAGAAGATTCATGTTTTTCGATACCTCAGTGACAACCAAAAGAGACGAAC
CTAATCGAGTTCCATGGTTCGCTAAGCAAAAGAAAAGTCTACCATTCAAT
CCGCGCTTCATGTTTTCGCGTGATTCCTTACCATTTAATCACcgttttat
gttttttgataGCTCATCAGCATTGAAAAATTACGTACCCAATCGAGTTC
CTTGGTttgcaaaacaaaagaagagctTTGAAACCAACGATGGTGACGCC
CCGAATAGAATCCCTTGGTTCGCCAGCAGGCAGAAGAAAGACTCACTAGT
GCCACTCACGTTTAAAGATGTTCCTAACATTGTTAAAGACAACAAAGCTT
ctaaattttccttcaaaagaaGTGACATCACAATCCCCATCACCGAGTAT
TATTACTCACCAGGACCCGAAAATCTCGATCGTTACATACCACCTGGAGT
CGTCAATCACAATAGGCTTAGTGGTTTTAAGGACACTGGTAAAAATCTCA
AATCTAAAGACGGTAAGAAACCAAGGATGGTCATATTTGGAGATGCTGTT
TCGAGCGGAGCTGCAACTGAAGAATCTAGCAATCACCAAGAGGAGAAAGG
AAAAGATCACGGAATCCTTCCACCCAATTTTATGGGCAGAACGTACCAGA
GAGAAGCCAGATCTTCATCCAAATCTTCATCATCAATACCTTTATCCTTT
ATTAGAGATAAAGAAAACACCAGAAGTCTATCAACAATTCCATTAACATT
CATTAACAAGAAAGATGAACCCGTCCCAAATAAAATTCCGTGGTTCGCAG
TAAAACGTCAGAAGAAGAGTTTGGCGCCCGATAGCTTCGAAGACGAGACT
AACAATGATGAAGATGGGGAAAGTAAAGAGTCAAGATATCCTCTTTTTCT
CTATAAAGATGCTTCCAATTCGTTCGCAGACTTCCTAACAACTGCTAAGG
ATCAACCATCCAATCAAATATCATCTGATGTCCATCGCCGCTCCGCGATT
CGTCAAATCTTAACCAATCAGCATCAAATAAGACGACGCGAGGATAGCCA
ATTCCCAATCAGATGTGGCAATGTTTCCGGTTGTGACAAGCGACGCTGTA
TTAATGGAATATGTAGGATTGTTTGCAGCAATAAAACATTAGTATGCCTA
CAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050887-exon-scaffold_19-1491911889:660334..660468 | TCONS_00050887-exon-scaffold_19-1491911889:660334..660468 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1510915933:660334..660468 | TCONS_00050887-exon-scaffold_19-1510915933:660334..660468 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1575043694:660334..660468 | TCONS_00050887-exon-scaffold_19-1575043694:660334..660468 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1491911889:661944..662317 | TCONS_00050887-exon-scaffold_19-1491911889:661944..662317 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1510915933:661944..662317 | TCONS_00050887-exon-scaffold_19-1510915933:661944..662317 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1575043694:661944..662317 | TCONS_00050887-exon-scaffold_19-1575043694:661944..662317 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1491911889:662480..663844 | TCONS_00050887-exon-scaffold_19-1491911889:662480..663844 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1510915933:662480..663844 | TCONS_00050887-exon-scaffold_19-1510915933:662480..663844 | Clytia hemisphaerica | exon |
| TCONS_00050887-exon-scaffold_19-1575043694:662480..663844 | TCONS_00050887-exon-scaffold_19-1575043694:662480..663844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:660334..663844 + |
Blast
The following BLAST results are available for this feature:
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