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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050891 ID=TCONS_00050891|Name=TCONS_00050891|organism=Clytia hemisphaerica|type=transcript|length=1880bp
taacgtgtgaacaggGTCTAAGTACTTGTTATGTTATTTTGGCTAATGCA
AAGATGAGGAATCTTTGTCTTCTGGTTTTCTGCTTTTGCAGTGCTACCTA
TGTGTCGGCCGCCGACCAATCGCCAAACAGTGATGACGTTTGGATAGTTG
CCGAAACGGAACCGACACTACTGAGTCCAATAATTAAATATAAAAGGGTG
ACGAAGTCAACAATTGAAGCTTGTTTACCAAGTCCACCCGAATGGGAAAC
TACCAAATGGGTCCAACACAAAACACAattcaacaaaaagaaaatcaggA
AGGATCAAAAATCATTGTTGTGGAAATTGTGGAAACAAATTGAATTGTAT
TTAGTGAAAGCAATCAACAAAAAGCATAAAGaatatgaaaaagtgaaaaa
tcttttcacTTATACTGTTACTGAAGTCAGTGGTGACAATATTATCCTGA
CTATCTATTTCAAGGTACCGGATAAAATGAATGACGATGATTTTGATTTG
ACGTGTGATCAGATTACTGGTGTCGACAGAGAATCGGATAggcaatcaaa
atcaaaaaaatgtgCATTGGTTGTCGGAATCACGGAATCAAAATGCTTTG
TCAGTACCAGGAAAAGACGCATCAGCAAGAGGTTCTCCATTGCAACGTTG
AAGAAACGTTATTTTACAACTTCTGGAAACAACGGTGTCAGATCTGGTAA
GCGTGGTATGCCTATGGGAAAACAAGCTAAATtccaaatcaaattttttg
aagaaagtGATTGCTCTTGCAtcgaataatttttttaaaaaacattgtaA
AATTTACATCAAGAacaccctgtgtcacagacacttgaaaattgactttt
ttcaTCCCTACGCGAAATTCAATATTTAGAAATTGCACTTTAAAACCATT
CCCACTAGATTTTTTAATATTggaaatagaatttctatcttcattgggat
ttcaataggaatttttatcccgactgaggaaaaaagtactaccggggctg
tgagacaggggtgttcaatACAATTTTGAAAGTTATTTACTTTCGGAACG
ATTTTACCACCTTTTTGTATAATGTAGTTATATGTAATACTCATTGCtat
ttttatttgttgtttttttttagtaaTTCCTTATGGTTTTCTCAGTTAGG
CCTGATTTAGATTTAAGAACTGAAAGACGGAATTTCTTAAATGTGttcca
ttatttttttgttttgatagagAATGGGGCCTATTCTTCTACTATTTATA
CAAAGCGTGTACAGCCACACTGTACTTTAGCTGTGAGCAAAAGATTCCGA
TCCGATTCTAAATGTGTTAGAAGttattaaagtctgttcacgataagtgt
gcactcttttttcatgtaCATATAACTTTctaaggaattcttcaatcttt
ataaatttggtatcgttagaGAGATaattgtgagtggaacaatttgaaat
aaaaaagtctttaaaaatgttctaaaaacgaagatgaaaataaagaagaa
aaaaataaagatcttgtagaaaagtgctataacttttattttcgtgaata
gactttagtatgATTTTCATTGGTGTGAATGAAGAGTGCTCTTATGAACA
GAAGAATTTAATGACGTCCCTACATTACATTTAGGTAAATTCAGGCGCAT
ACTTTTTCCAGATAtcgattttaaaatatttaaatatctTGCTTTTTTTG
TAATCACATGCATTTTTGGCAAAGGCCATCATTCTTTTTATAGGTTTTGT
AAATATTTAGAAATTCTTTAAACTTgtgttgtttttgaaaatatataaac
gTTGATGTTATTAGCACTCTTAAAAGGTCATGGTTTCAAACCATCCCATA
CTGTGTGttttgatatcatgttcaaagtTC Run BLAST on NCBI protein sequence of TCONS_00050891-protein >TCONS_00050891-protein ID=TCONS_00050891-protein|Name=TCONS_00050891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
TCEQGLSTCYVILANAKMRNLCLLVFCFCSATYVSAADQSPNSDDVWIVA
ETEPTLLSPIIKYKRVTKSTIEACLPSPPEWETTKWVQHKTQFNKKKIRK
DQKSLLWKLWKQIELYLVKAINKKHKEYEKVKNLFTYTVTEVSGDNIILT
IYFKVPDKMNDDDFDLTCDQITGVDRESDRQSKSKKCALVVGITESKCFV
STRKRRISKRFSIATLKKRYFTTSGNNGVRSGKRGMPMGKQAKFQIKFFE
ESDCSCIE Run BLAST on NCBI transcript from alignment at scaffold_19:713242..716057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050891 ID=TCONS_00050891|Name=TCONS_00050891|organism=Clytia hemisphaerica|type=transcript|length=2816bp|location=Sequence derived from alignment at scaffold_19:713242..716057+ (Clytia hemisphaerica)
taacgtgtgaacaggGTCTAAGTACTTGTTATGTTATTTTGGTAAGTTTG
ACGTTAAATGCGGTTTTtcgaggccccttgaaaatggaatTTTTCTCAAA
GTGGTCTGATGATAAATTTATCGTAAACAAAAATATCGCTTGTAGTAATC
TTTAAGCTAAAACTCATAACGAGGCGTGGTATACTCTTTGTTGTTGAGAT
GAGAACCAACCAGCTAGAATTGTTCGTATCTTGTTCCTATATTTATTAGA
ATAGCATTTACTGCTTAATACTTACTTCAATTCTTACATTCTGAACtcaa
tagttttttttaattattcattATCTATTATTAATTGTTTTAGCCTTTTT
AAGACCCATTTTTGAGAGGGCTTTCACGGTTCTGCCCTTTTAACTCAAAG
GAAAGTTTTAATAGAATTGCGGAATTCAGGTCCACTGTCGGGGACAGAAG
CTTTACATTGTCTGGAATATCGGAAAAACtccaatttcaaagaaaatttc
tgtGGTTCAAATTTCGGCTTTCATTTTTAGTATGAcggaaatttggaaag
aaaataacGATATGGCAGAATTAGGAAGCCCCTGCAACCTCACTGCTCCT
ACAACAAAActagaaatatatttttctttgtttttagcgTTTTGGCAATG
TTCTTATGAAGTTGCTCTCATAAAGTTGTAAACTTTTTTCTGGGTCATTT
TGTGTGGAAACCAGGGCATTGCAAACATTACAGCTCCCTTTCAGAGTGGT
TTTCACATGGTGTAAGAAAGAGTGTTTCTTCATCGTTCTTGTAACGTTAG
AAACGATTAATGGACGTTTCCCCGACGGACATTTCCCCGACGGTCATAGT
CGGGGAAACGTCCGTTCGGGGAAAAGTCCATCGGGGAAATGTCTGGCCGG
GAAAAcgttcgtcggggaaaaatctGTCGGGGAAACGTCCGGTCACCTTA
AAAACTTAACTTTCTTATTTCTAATAGGCTAATGCAAAGATGAGGAATCT
TTGTCTTCTGGTTTTCTGCTTTTGCAGTGCTACCTATGTGTCGGCCGCCG
ACCAATCGCCAAACAGTGATGACGTTTGGATAGTTGCCGAAACGGAACCG
ACACTACTGAGTCCAATAATTAAATATAAAAGGGTGACGAAGTCAACAAT
TGAAGCTTGTTTACCAAGTCCACCCGAATGGGAAACTACCAAATGGGTCC
AACACAAAACACAattcaacaaaaagaaaatcaggAAGGATCAAAAATCA
TTGTTGTGGAAATTGTGGAAACAAATTGAATTGTATTTAGTGAAAGCAAT
CAACAAAAAGCATAAAGaatatgaaaaagtgaaaaatcttttcacTTATA
CTGTTACTGAAGTCAGTGGTGACAATATTATCCTGACTATCTATTTCAAG
GTACCGGATAAAATGAATGACGATGATTTTGATTTGACGTGTGATCAGAT
TACTGGTGTCGACAGAGAATCGGATAggcaatcaaaatcaaaaaaatgtg
CATTGGTTGTCGGAATCACGGAATCAAAATGCTTTGTCAGTACCAGGAAA
AGACGCATCAGCAAGAGGTTCTCCATTGCAACGTTGAAGAAACGTTATTT
TACAACTTCTGGAAACAACGGTGTCAGATCTGGTAAGCGTGGTATGCCTA
TGGGAAAACAAGCTAAATtccaaatcaaattttttgaagaaagtGATTGC
TCTTGCAtcgaataatttttttaaaaaacattgtaAAATTTACATCAAGA
acaccctgtgtcacagacacttgaaaattgacttttttcaTCCCTACGCG
AAATTCAATATTTAGAAATTGCACTTTAAAACCATTCCCACTAGATTTTT
TAATATTggaaatagaatttctatcttcattgggatttcaataggaattt
ttatcccgactgaggaaaaaagtactaccggggctgtgagacaggggtgt
tcaatACAATTTTGAAAGTTATTTACTTTCGGAACGATTTTACCACCTTT
TTGTATAATGTAGTTATATGTAATACTCATTGCtatttttatttgttgtt
tttttttagtaaTTCCTTATGGTTTTCTCAGTTAGGCCTGATTTAGATTT
AAGAACTGAAAGACGGAATTTCTTAAATGTGttccattatttttttgttt
tgatagagAATGGGGCCTATTCTTCTACTATTTATACAAAGCGTGTACAG
CCACACTGTACTTTAGCTGTGAGCAAAAGATTCCGATCCGATTCTAAATG
TGTTAGAAGttattaaagtctgttcacgataagtgtgcactcttttttca
tgtaCATATAACTTTctaaggaattcttcaatctttataaatttggtatc
gttagaGAGATaattgtgagtggaacaatttgaaataaaaaagtctttaa
aaatgttctaaaaacgaagatgaaaataaagaagaaaaaaataaagatct
tgtagaaaagtgctataacttttattttcgtgaatagactttagtatgAT
TTTCATTGGTGTGAATGAAGAGTGCTCTTATGAACAGAAGAATTTAATGA
CGTCCCTACATTACATTTAGGTAAATTCAGGCGCATACTTTTTCCAGATA
tcgattttaaaatatttaaatatctTGCTTTTTTTGTAATCACATGCATT
TTTGGCAAAGGCCATCATTCTTTTTATAGGTTTTGTAAATATTTAGAAAT
TCTTTAAACTTgtgttgtttttgaaaatatataaacgTTGATGTTATTAG
CACTCTTAAAAGGTCATGGTTTCAAACCATCCCATACTGTGTGttttgat
atcatgttcaaagtTC Coding sequence (CDS) from alignment at scaffold_19:713242..716057+ >TCONS_00050891 ID=TCONS_00050891|Name=TCONS_00050891|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_19:713242..716057+ (Clytia hemisphaerica)
acgtgtgaacaggGTCTAAGTACTTGTTATGTTATTTTGGCTAATGCAAA
GATGAGGAATCTTTGTCTTCTGGTTTTCTGCTTTTGCAGTGCTACCTATG
TGTCGGCCGCCGACCAATCGCCAAACAGTGATGACGTTTGGATAGTTGCC
GAAACGGAACCGACACTACTGAGTCCAATAATTAAATATAAAAGGGTGAC
GAAGTCAACAATTGAAGCTTGTTTACCAAGTCCACCCGAATGGGAAACTA
CCAAATGGGTCCAACACAAAACACAattcaacaaaaagaaaatcaggAAG
GATCAAAAATCATTGTTGTGGAAATTGTGGAAACAAATTGAATTGTATTT
AGTGAAAGCAATCAACAAAAAGCATAAAGaatatgaaaaagtgaaaaatc
ttttcacTTATACTGTTACTGAAGTCAGTGGTGACAATATTATCCTGACT
ATCTATTTCAAGGTACCGGATAAAATGAATGACGATGATTTTGATTTGAC
GTGTGATCAGATTACTGGTGTCGACAGAGAATCGGATAggcaatcaaaat
caaaaaaatgtgCATTGGTTGTCGGAATCACGGAATCAAAATGCTTTGTC
AGTACCAGGAAAAGACGCATCAGCAAGAGGTTCTCCATTGCAACGTTGAA
GAAACGTTATTTTACAACTTCTGGAAACAACGGTGTCAGATCTGGTAAGC
GTGGTATGCCTATGGGAAAACAAGCTAAATtccaaatcaaattttttgaa
gaaagtGATTGCTCTTGCAtcgaataaacgtgtgaacaggGTCTAAGTAC
TTGTTATGTTATTTTGGCTAATGCAAAGATGAGGAATCTTTGTCTTCTGG
TTTTCTGCTTTTGCAGTGCTACCTATGTGTCGGCCGCCGACCAATCGCCA
AACAGTGATGACGTTTGGATAGTTGCCGAAACGGAACCGACACTACTGAG
TCCAATAATTAAATATAAAAGGGTGACGAAGTCAACAATTGAAGCTTGTT
TACCAAGTCCACCCGAATGGGAAACTACCAAATGGGTCCAACACAAAACA
CAattcaacaaaaagaaaatcaggAAGGATCAAAAATCATTGTTGTGGAA
ATTGTGGAAACAAATTGAATTGTATTTAGTGAAAGCAATCAACAAAAAGC
ATAAAGaatatgaaaaagtgaaaaatcttttcacTTATACTGTTACTGAA
GTCAGTGGTGACAATATTATCCTGACTATCTATTTCAAGGTACCGGATAA
AATGAATGACGATGATTTTGATTTGACGTGTGATCAGATTACTGGTGTCG
ACAGAGAATCGGATAggcaatcaaaatcaaaaaaatgtgCATTGGTTGTC
GGAATCACGGAATCAAAATGCTTTGTCAGTACCAGGAAAAGACGCATCAG
CAAGAGGTTCTCCATTGCAACGTTGAAGAAACGTTATTTTACAACTTCTG
GAAACAACGGTGTCAGATCTGGTAAGCGTGGTATGCCTATGGGAAAACAA
GCTAAATtccaaatcaaattttttgaagaaagtGATTGCTCTTGCAtcga
ataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050891-exon-scaffold_19-1491911889:713242..713282 | TCONS_00050891-exon-scaffold_19-1491911889:713242..713282 | Clytia hemisphaerica | exon |
| TCONS_00050891-exon-scaffold_19-1510915933:713242..713282 | TCONS_00050891-exon-scaffold_19-1510915933:713242..713282 | Clytia hemisphaerica | exon |
| TCONS_00050891-exon-scaffold_19-1575043694:713242..713282 | TCONS_00050891-exon-scaffold_19-1575043694:713242..713282 | Clytia hemisphaerica | exon |
| TCONS_00050891-exon-scaffold_19-1491911889:714219..716057 | TCONS_00050891-exon-scaffold_19-1491911889:714219..716057 | Clytia hemisphaerica | exon |
| TCONS_00050891-exon-scaffold_19-1510915933:714219..716057 | TCONS_00050891-exon-scaffold_19-1510915933:714219..716057 | Clytia hemisphaerica | exon |
| TCONS_00050891-exon-scaffold_19-1575043694:714219..716057 | TCONS_00050891-exon-scaffold_19-1575043694:714219..716057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_19 | supercontig | scaffold_19:713242..716057 + |
Blast
The following BLAST results are available for this feature:
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