TCONS_00050924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050924
Unique NameTCONS_00050924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050924 ID=TCONS_00050924|Name=TCONS_00050924|organism=Clytia hemisphaerica|type=transcript|length=1115bp
CGATCGGCCgcagacatttcaatagaaacaaaagattctacagcctagct
tcaaatagatgaatagcgcatttcttatcctcttttcccaaatctctgat
ttATCCCTatcattgatttttttacttttgttgtATTTAATAAACAGCAA
GATGTCCATTATTCACGTCGCAATGATCGTATGATTTCCAATTTGGAAGT
TTATTGCCAAAATAGAATTGAAGGAGGAGAAGGCTGTGAATGGACTGGTC
CTATTAATGAATTTGAGGACCACGAAAATAACAAATGCAAATTCAAACGT
ATGGAATGTATATTGGGATGTGGAGAGAGTATTCtaaaaaaagatgaaga
aaatcaTGGAAAGATTTGTTTTCACCGCAAAGAGGATTGTCAATACTGCA
ATGTGAAGTTTCACTTCTTCGAGTTAAATGAGAATCAACATTATGAAAGT
TGTGAATTATTACCGATCAGTTGTGGAAATCAAGGCTGTGGCAAGATGCT
CCCAAGAAAAGAGATGAGAGAAATTCACGAGAAGAACTGTCCCTTTATGA
AGATCAAATGCGATTTTGTTGGATTTGGATGTCAAGAAGAAGTAAAATGT
TGAAATCAGAGCAAGATGATCATGACAAAGAATTTGActcaaaacacaca
aaaatgATGCTTCGCTCTTTGACACGTGAGCTTTCGGAAATGAAAAAGGA
GATCAGAGAAGATAAGGTCACTAAACAAGAATTAGAAGATGTCAAGAATG
AGTTGGCAATTACACAAGGGAGATTCGCAAATGCAGAAAAAGTTAATgtt
gagcaaaaaaacataatcGATAAAACCATCGGTTTTTTGCAGTTTGTAGA
AGAAGGAGTCACTAATCTTTCTCCAACAGCAATCAAAGAAATGTTTAGGC
AACTCGAAGAAGCGCAACAAAAAGTTGACCCTAAGCTGTTAGAGCCATTT
GTGTATGAAGACAAAGCATATGACTTCGAAAATCTATTTTGTCGATTCTT
GAAAGTCGATTATGAAGAACGAATTAAAATACTTCTTCCAAAAATGGTGA
TTGGTGAAATTTATCAAATCGAAAATGGTAGACAAGTAATCTTCAAACTT
AAGTTAACTGAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_19:628807..631919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050924 ID=TCONS_00050924|Name=TCONS_00050924|organism=Clytia hemisphaerica|type=transcript|length=3113bp|location=Sequence derived from alignment at scaffold_19:628807..631919- (Clytia hemisphaerica)
CGATCGGCCGCAGACATTTCAATAGAAACAAAAGATTCTACAGCCTAGCT
TCAAATAGATGAATAGCGCATTTCTTATCCTCTTTTCCCAAATCTCTGAT
TTATCCCTATCATTGATTTTTTTACTTTTGTTGTATTTAATAAACAGCAA
GATGTCCATTATTCACGTCGCAATGATCGTATGATTTCCAATTTGGAAGT
TTATTGCCAAAATAGAATTGAAGGAGGAGAAGGCTGTGAATGGACTGGTC
CTATTAATGAATTTGAGGTAAACTGAATTTTAATTATCATTGTTACATTC
TTTGACATTCAACCGTCTCGCAAAATCTCTAGAGCTATCTAAGTCAAATG
AAGTAAGGCTAAAACTAGAACTGCATCTCAGCAATTGAGTATCCTGCATT
AAACTCCGCAAGCTTTTGTCAGCAGAAGGTTTTCGTGATGGTAAGAATAT
TTAAATTGATTTTTCACAAAAAGTTTAAGAATATCCATGATAAAATGTTA
CAACATTTTTATAAGAAATCGTGTACATATTTAAACAGACTTTACATAGG
CGAAGCGAGATACCCTGCAAAATTTATGAGGGAGTACAGACGTTTATGAC
ATATTCATTATCTTTTGATAAAACAAAGACAATAATTACAGTGTCGTAAA
AACCGCTCTCATTCATAATTGTTGCAGGGTATCTCGCTACGCCTATGCTT
TAGAGGCAGTTAATTTTGACCAGTCTGAAAGGTGAACTCTTTTATTTCGA
CCTAAACCAACATTAAAATTGAAAATTTTATATTTCCCCCCTTTTATAAG
GACCACGAAAATAACAAATGCAAATTCAAACGTATGGAATGTATATTGGG
ATGTGGAGAGAGTATTCTAAAAAAAGATGAAGAAAATCATGGAAAGATTT
GTTTTCACCGCAAAGAGGATTGTCAATACTGCAATGTGAAGTTTCACTTC
TTCGAGTTAAATGAGGTTATTAGTTTGATTTTGCGCACCTTATCGGTCCC
TTTAAACGAGCCCTAAGTTACACTTGTCTGAATGGCAGACCCCAAAAGCC
GAAGGTAGTATAGTCTATAAGGAGCACTACCAAGTTTGAATCTACACCAA
TAAGCGCTGTTAATAACGCCAGAATCTTTATGAGCGTTGCCATCAATAAG
CGCGACAGACTTACGAACTAAAACTTTATCATTTTACCAGACTTTTTACC
ATAACTGATAAGAAAGCTAAATCTATCGAAATAAAGCCTTTACTATAAAT
AGCGGAAACCAAGAAATATTGTTATAAAATTAATGTTTAATTGGTGAAAA
CAAAAAACGGATTGTTCTAAATGTTACAAAGAGGACCACCCGTTTAATCA
GTGCATCCCACACCCCTGTCTCAGTGCCCCGGTGGAGCCTTTTCTTTCAG
TGGGGATGAAAATTTCTATCGAAATCCCAATGGGGATAGAAAATCCATTG
TTTCCAGCTCGAAAATTCCAGTGGGGATAGTTTTGGAGTGCAATTTTTTC
CACTCAATTTTCAATGGGGATAGAATCATAGGGTAATTTCCCAGTGGGAT
TGAAAATGTAGGGTTTTTTTCCACCGGGACAATTTTTTGGCCTATTTTTC
CACCGGTGCGGGGGGTCCACCGGGTCTGTGACACAGGGGTGTCATCCCTA
TAAAGAGTATACCATGAAACTCCAGACTATGGTTATTTTTCCATTAATCA
TTCGTTCATTGTATGAGCTTGCAATTTGTTTTAGAATCAACATTATGAAA
GTTGTGAATTATTACCGATCAGTTGTGGAAATCAAGGCTGTGGCAAGATG
CTCCCAAGAAAAGAGGTGAGTTTATATCATTTCAAAATTTAAAAACTTTC
TTAAGGCAAGGTCAGAATATAATAATAAGATCGTTTGTTATCTGTGTAAT
ACAGTAGTAAAGCTGCCATATTACTTTACTATCTATGTAAATTATGGGCT
CCTTTTCGCTCATTATTCTTTTCAGATGAGAGAAATTCACGAGAAGAACT
GTCCCTTTATGAAGATCAAATGCGATTTTGTTGGATTTGGATGTCAAGAA
GAAGTAAAGTTATATCTGAGTAGTTTTTTGAATAGTCCAGTAAAAATAGG
TTTTTACCTGGAATATGTGGCTGAATTCGACACGGAAGGTACCTTGTCGG
TCCTAGAATCAGCAAAAAAACTGCAGTTTGAGATAGCACAAACCTACCAT
ATTACTTGGCCTTCTCCGTATCCTACCCCCTAACAATAACCCTCCGTTAT
CTCGGATCCTCTTTGTGCGTTTTATGTTGCTGTCTATTTTCTCCACTTCA
GCACAAACCCCTGCAAACAAGTCTTTTAATGAATTTTCAAGAAAAAAATT
CAAGTCATATGAAAAATCTTTAAAAGGAGATAAAAAAATTGGGTTGTTTT
GAAAAATTTGATGACTACTAAAATATTCTGAGCAAAATCTACCATATTTA
TTACCTGGCTCTTTCTCGTGTCCTACGCCTATGACCTTCTGTTTGTTTTT
ATATACAAGTTGCACATCTGAAGCTATCTCAATAAGCAAGAATCTTGAAT
TCCATAACTTCCCTGATTTCAAAATATTTTTATCCCATTTATAGATGTTG
AAATCAGAGCAAGATGATCATGACAAAGAATTTGACTCAAAACACACAAA
AATGATGCTTCGCTCTTTGACACGTGAGCTTTCGGAAATGAAAAAGGAGA
TCAGAGAAGATAAGGTCACTAAACAAGAATTAGAAGATGTCAAGAATGAG
TTGGCAATTACACAAGGGAGATTCGCAAATGCAGAAAAAGTTAATGTTGA
GCAAAAAAACATAATCGATAAAACCATCGGTTTTTTGCAGTTTGTAGAAG
AAGGAGTCACTAATCTTTCTCCAACAGCAATCAAAGAAATGTTTAGGCAA
CTCGAAGAAGCGCAACAAAAAGTTGACCCTAAGCTGTTAGAGCCATTTGT
GTATGAAGACAAAGCATATGACTTCGAAAATCTATTTTGTCGATTCTTGA
AAGTCGATTATGAAGAACGAATTAAAATACTTCTTCCAAAAATGGTGATT
GGTGAAATTTATCAAATCGAAAATGGTAGACAAGTAATCTTCAAACTTAA
GTTAACTGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032269XLOC_032269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050924-exon-scaffold_19-1575043694:631653..631919TCONS_00050924-exon-scaffold_19-1575043694:631653..631919Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1575043694:630955..631119TCONS_00050924-exon-scaffold_19-1575043694:630955..631119Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1575043694:630105..630185TCONS_00050924-exon-scaffold_19-1575043694:630105..630185Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1575043694:629862..629944TCONS_00050924-exon-scaffold_19-1575043694:629862..629944Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1575043694:628807..629325TCONS_00050924-exon-scaffold_19-1575043694:628807..629325Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1510915933:631653..631919TCONS_00050924-exon-scaffold_19-1510915933:631653..631919Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1510915933:630955..631119TCONS_00050924-exon-scaffold_19-1510915933:630955..631119Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1510915933:630105..630185TCONS_00050924-exon-scaffold_19-1510915933:630105..630185Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1510915933:629862..629944TCONS_00050924-exon-scaffold_19-1510915933:629862..629944Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1510915933:628807..629325TCONS_00050924-exon-scaffold_19-1510915933:628807..629325Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1491911889:631653..631919TCONS_00050924-exon-scaffold_19-1491911889:631653..631919Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1491911889:630955..631119TCONS_00050924-exon-scaffold_19-1491911889:630955..631119Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1491911889:630105..630185TCONS_00050924-exon-scaffold_19-1491911889:630105..630185Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1491911889:629862..629944TCONS_00050924-exon-scaffold_19-1491911889:629862..629944Clytia hemisphaericaexon
TCONS_00050924-exon-scaffold_19-1491911889:628807..629325TCONS_00050924-exon-scaffold_19-1491911889:628807..629325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:628807..631919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.62745	0.19867	1.32177	1.26376	0.878823	0.48227	1.10281	0.699568	0.798116	0.669892	0.858696	0.474104	1.02707	0.892474	3.05089	0.0644522	0.573973	0.518065	2.11278	2.30201	1.97515	0.950916	0.707722	1.24872
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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