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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050926 ID=TCONS_00050926|Name=TCONS_00050926|organism=Clytia hemisphaerica|type=transcript|length=1739bp
ATCGTCACTTAAAAATATAGATTCAGTACATACTTTAAATTCATACAAGA
AATATCCTTTATCGTATATGTATcaagaatatttaaaaataattataatt
gAAATGAAACTGCCCTAGATTATACCTACTAAACATTAAAGTACAATGTA
TTGTCAATTAAGATTATTATTTACCCATATTTAAAGTCTTGTTGATGGAA
ACCCATGAATTCAATTtgtcaaaatgttgaaaatttaatgCACTGCGAAT
TCCATACTATTTGTTCTCGCATTCTCTGAAAATTGTCTACACAGTCTATT
GTAGGCATACTAATGTTTTATTGCTGCAAACAATCCTACATATTCCATTA
ATACAGCGTCGCTTGTCACAACCGGAAACATTGCCACATCTGATTGGGAA
TTGGCTATCCTCGCGTCGTCTTATTTGATGCTGATTGGTTAAGATTTGAC
GAATCGCGGAGCGGCGATGGACATCAGATGATATTTGATTGGATGGTTGA
TCCTTAGCAGTTGTTAGGAAGTCTGCGAACGAATTGGAAGCATCTTTATA
GAGAAAAAGAGGATATCTTGACTCTTTACTTTCCCCATCTTCATCATTGT
TAGTCTCGTCTTCGAAGCTATCGGGCGCCAAACTCTTCTTCTGACGTTTT
ACTGCGAACCACGGAATTTTATTTGGGACGGGTTCATCTTTCTTGTTAAT
GAATGTTAATGGAATTGTTGATAGACTTCTGGTGTTTTCTTTATCTCTAA
TAAAGGATAAAGGTATTGATGATGAAGATTTGGATGAAGATCTGGCTTCT
CTCTGGTACGTTCTGCCCATAAAATTGGGTGGAAGGATTCCGTGATCTTT
TCCTTTCTCCTCTTGGTGATTGCTAGATTCTTCAGTTGCAGCTCCGCTCG
AAACAGCATCTCCAAATATGACCATCCTTGGTTTCTTACCGTCTTTAGAT
TTGAGATTTTTACCAGTGTCCTTAAAACCACTAAGCCTATTGTGATTGAC
GACTCCAGGTGGTATGTAACGATCGAGATTTTCGGGTCCTGGTGAGTAAT
AATACTCGGTGATGGGGATTGTGATGTCACttcttttgaaggaaaattta
gAAGCTTTGTTGTCTTTAACAATGTTAGGAACATCTTTAAACGTGAGTGG
CACTAGTGAGTCTTTCTTCTGCCTGCTGGCGAACCAAGGGATTCTATTCG
GGGCGTCACCATCGTTGGTTTCAAagctcttcttttgttttgcaaACCAA
GGAACTCGATTGGGTACGTAATTTTTCAATGCTGATGAGCtatcaaaaaa
cataaaacgGTGATTAAATGGTAAGGAATCACGCGAAAACATGAAGCGCG
GATTGAATGGTAGACCTTTCTTTTGCTTGGTAAACCATGGAACTTGATTA
GGCCCGTTACTTCTCGAAGTTGACGAAATGTCGGAAAACATGAAGCGGTG
ATTGAATGGTAATCTTTCGtcattttttgctgattcagcatcaCGTGAAA
ACATGAAGCGCGGATGGAATGGTAAACTTTTCTTTTGCATAGCAAACCAT
GGAACCCTTCCGGGAGTATCTCTCTGTGGCGTAGCAGCTGCTTCGGTGAG
ATTGGTAAGATCCGATGCACTTGTAGAGCTTTCTTGAGAGTTTTGGATGG
TTTTCCCTTGAGATGAAGAAAGCAAGATCAGCGTTGGAAGGATAAGTCTG
TGAATCATTCTGTTTCGTTccattttttttcgtcaaaat Run BLAST on NCBI transcript from alignment at scaffold_19:661944..663844- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050926 ID=TCONS_00050926|Name=TCONS_00050926|organism=Clytia hemisphaerica|type=transcript|length=1901bp|location=Sequence derived from alignment at scaffold_19:661944..663844- (Clytia hemisphaerica)
ATCGTCACTTAAAAATATAGATTCAGTACATACTTTAAATTCATACAAGA
AATATCCTTTATCGTATATGTATCAAGAATATTTAAAAATAATTATAATT
GAAATGAAACTGCCCTAGATTATACCTACTAAACATTAAAGTACAATGTA
TTGTCAATTAAGATTATTATTTACCCATATTTAAAGTCTTGTTGATGGAA
ACCCATGAATTCAATTTGTCAAAATGTTGAAAATTTAATGCACTGCGAAT
TCCATACTATTTGTTCTCGCATTCTCTGAAAATTGTCTACACAGTCTATT
GTAGGCATACTAATGTTTTATTGCTGCAAACAATCCTACATATTCCATTA
ATACAGCGTCGCTTGTCACAACCGGAAACATTGCCACATCTGATTGGGAA
TTGGCTATCCTCGCGTCGTCTTATTTGATGCTGATTGGTTAAGATTTGAC
GAATCGCGGAGCGGCGATGGACATCAGATGATATTTGATTGGATGGTTGA
TCCTTAGCAGTTGTTAGGAAGTCTGCGAACGAATTGGAAGCATCTTTATA
GAGAAAAAGAGGATATCTTGACTCTTTACTTTCCCCATCTTCATCATTGT
TAGTCTCGTCTTCGAAGCTATCGGGCGCCAAACTCTTCTTCTGACGTTTT
ACTGCGAACCACGGAATTTTATTTGGGACGGGTTCATCTTTCTTGTTAAT
GAATGTTAATGGAATTGTTGATAGACTTCTGGTGTTTTCTTTATCTCTAA
TAAAGGATAAAGGTATTGATGATGAAGATTTGGATGAAGATCTGGCTTCT
CTCTGGTACGTTCTGCCCATAAAATTGGGTGGAAGGATTCCGTGATCTTT
TCCTTTCTCCTCTTGGTGATTGCTAGATTCTTCAGTTGCAGCTCCGCTCG
AAACAGCATCTCCAAATATGACCATCCTTGGTTTCTTACCGTCTTTAGAT
TTGAGATTTTTACCAGTGTCCTTAAAACCACTAAGCCTATTGTGATTGAC
GACTCCAGGTGGTATGTAACGATCGAGATTTTCGGGTCCTGGTGAGTAAT
AATACTCGGTGATGGGGATTGTGATGTCACTTCTTTTGAAGGAAAATTTA
GAAGCTTTGTTGTCTTTAACAATGTTAGGAACATCTTTAAACGTGAGTGG
CACTAGTGAGTCTTTCTTCTGCCTGCTGGCGAACCAAGGGATTCTATTCG
GGGCGTCACCATCGTTGGTTTCAAAGCTCTTCTTTTGTTTTGCAAACCAA
GGAACTCGATTGGGTACGTAATTTTTCAATGCTGATGAGCTATCAAAAAA
CATAAAACGGTGATTAAATGGTAAGGAATCACGCGAAAACATGAAGCGCG
GATTGAATGGTAGACCTTTCTTTTGCTTGGTAAACCATGGAACTTGATTA
GGCCCGTTACTTCTCGAAGTTGACGAAATGTCGGAAAACATGAAGCGGTG
ATTGAATGGTAATCTTTCGTCATTTTTTGCTGATTCAGCATCACGTGAAA
ACATGAAGCGCGGATGGAATGGTAAGCTTTTCTTTTGCTTAGCGAACCAT
GGAACTCGATTAGGTTCGTCTCTTTTGGTTGTCACTGAGGTATCGAAAAA
CATGAATCTTCTGTTGAATGGTAATCTTTCATCGTTTTTTGCTGAGTCAG
CATCACGTGAAAACATGAAGCGCGGGTGGAATGGTAGACTTTTCTTTTGC
ATAGCAAACCATGGAACCCTTCCGGGAGTATCTCTCTGTGGCGTAGCAGC
TGCTTCGGTGAGATTGGTAAGATCCGATGCACTTGTAGAGCTTTCTTGAG
AGTTTTGGATGGTTTTCCCTTGAGATGAAGAAAGCAAGATCAGCGTTGGA
AGGATAAGTCTGTGAATCATTCTGTTTCGTTCCATTTTTTTTCGTCAAAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050926-exon-scaffold_19-1575043694:662320..663844 | TCONS_00050926-exon-scaffold_19-1575043694:662320..663844 | Clytia hemisphaerica | exon |
| TCONS_00050926-exon-scaffold_19-1575043694:661944..662157 | TCONS_00050926-exon-scaffold_19-1575043694:661944..662157 | Clytia hemisphaerica | exon |
| TCONS_00050926-exon-scaffold_19-1510915933:662320..663844 | TCONS_00050926-exon-scaffold_19-1510915933:662320..663844 | Clytia hemisphaerica | exon |
| TCONS_00050926-exon-scaffold_19-1510915933:661944..662157 | TCONS_00050926-exon-scaffold_19-1510915933:661944..662157 | Clytia hemisphaerica | exon |
| TCONS_00050926-exon-scaffold_19-1491911889:662320..663844 | TCONS_00050926-exon-scaffold_19-1491911889:662320..663844 | Clytia hemisphaerica | exon |
| TCONS_00050926-exon-scaffold_19-1491911889:661944..662157 | TCONS_00050926-exon-scaffold_19-1491911889:661944..662157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:661944..663844 - |
Blast
The following BLAST results are available for this feature:
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