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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050927 ID=TCONS_00050927|Name=TCONS_00050927|organism=Clytia hemisphaerica|type=transcript|length=1668bp
gTACAAGATCAAACTTTTTTAGTTATagctttaatttattttttcaagtt
aTATAAATCAATGACTTTAAATATAAATATTACACCATATATATGTATCA
Aagattcttttaaattttgccaaatttggcttaaattttattattaatat
tattattAGCTTAAAAGCTAatttagaattgttttttgaGCCTTGCTAAA
TACACACAAGGTTAAGAAAGCCTTGCTAAATACACACAAGGTTAAGAAAG
CCCAAAAATGCGCTTAAACTAGGTAAAAGatataaaagataaaatatttt
tacaaggtTTCGTGGGCTACACCCTTGGTTATACTAATATTTGTGTGACT
CGGCACCACCATGTCCGAAGCCTCCCGGCCCAAAAAGAGCCGAATAACAT
GGTTTGTTGCAGTAAGGTTTTCCTTCATGctataataaagaaaaatatga
gAATTATTACGAGATCGTACAATAAAAAATCAGAATTCCTTTATTGAAAG
TATTGTCTCTTCCCTAAATTTTATACAAATAAAATACGTACAtctcaaat
ttagacagtagcaagtttatgtatttttccttttttggggacggtggagt
gactgaagcgattagGAGTAACCCGGAGTTTTGATCCAAAAATTCAAGGA
CGGCAGAAGTGCTTTTTTTCCTTCATCCTCAGATGATCGAGGATCTACCT
AGTCAAACCAGAAGCATCTCCGTTGCAGAAAAACACACGTACATAAACTT
GCTAAGTTACACTATAGAGTCCGGTAGGACTTCCAGAGGTCCAGGAACAA
AATAGCCTTGGCATGTACAGTTTTAACctgaatatttcgatttaaaaaca
CAAAGTCTTACCTCAGCGTGGCCCCCTGATGATAAtgttttattgcattt
ttcacATCTTAAGCATGGTCTGTGCCAATCTTTACCaagtgacgtcactt
tttcagcTACAATGtgagaaaaattaagaaattgaagTCATGTACATTAC
aggaatttttttacttttagtttACTGATAATATCGTATCGTATCGGCTA
CGGCTATCTGCTAATCCCCGATCGGGTCATATCAAAGACTTCATATTTAg
tacaaaaatggtacttgatgcctctctgctgaatgctcagcaattaaaag
aaagattaaaggtaaatggagcaatccagggagtgTCTCCCTCCCTACCC
TTGGGTaggcaatttttttgagtctctTGAAATTCCTATGTGCTGCTTTG
TTTTAGGAAAAATAACACGCCCCATTCTCAAGACCACTTTATTAAATAAT
ATATTGAGACGATAAAAATACCTTTTGTTATGGCatttaaaaatgtcaaa
ctaAGGGGAGATAACAAACCTGTAGGTTTGTATAAGATTTACAGATTAAC
CAGCCCTCagaattttgatatgttttagaCTCGTTTAAATTGAGTAGTTT
TTATTCTGACTTACTCAGAGACATGAAGACACTGcaaatttttaccattt
tttgataAACTGAACAATTTCTCCCATTTTAAGAAAAGtcgaaaataaaa
gaattttttacGACTTTTTGAACACCGCAAGTATCAAAGGGTATGAATTT
ACGCTGTGACGACAAATGAGGATGAATACAAAAGTGACCATGACAATCAT
CGAtgcagtagcgtagcc Run BLAST on NCBI transcript from alignment at scaffold_19:668105..669806- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050927 ID=TCONS_00050927|Name=TCONS_00050927|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at scaffold_19:668105..669806- (Clytia hemisphaerica)
GTACAAGATCAAACTTTTTTAGTTATAGCTTTAATTTATTTTTTCAAGTT
ATATAAATCAATGACTTTAAATATAAATATTACACCATATATATGTATCA
AAGATTCTTTTAAATTTTGCCAAATTTGGCTTAAATTTTATTATTAATAT
TATTATTAGCTTAAAAGCTAATTTAGAATTGTTTTTTGAGCCTTGCTAAA
TACACACAAGGTTAAGAAAGCCCAAAAAATGNAATACACACAAGGTTAAG
AAAGCCTTGCTAAATACACACAAGGTTAAGAAAGCCCAAAAATGCGCTTA
AACTAGGTAAAAGATATAAAAGATAAAATATTTTTACAAGGTTTCGTGGG
CTACACCCTTGGTTATACTAATATTTGTGTGACTCGGCACCACCATGTCC
GAAGCCTCCCGGCCCAAAAAGAGCCGAATAACATGGTTTGTTGCAGTAAG
GTTTTCCTTCATGCTATAATAAAGAAAAATATGAGAATTATTACGAGATC
GTACAATAAAAAATCAGAATTCCTTTATTGAAAGTATTGTCTCTTCCCTA
AATTTTATACAAATAAAATACGTACATCTCAAATTTAGACAGTAGCAAGT
TTATGTATTTTTCCTTTTTTGGGGACGGTGGAGTGACTGAAGCGATTAGG
AGTAACCCGGAGTTTTGATCCAAAAATTCAAGGACGGCAGAAGTGCTTTT
TTTCCTTCATCCTCAGATGATCGAGGATCTACCTAGTCAAACCAGAAGCA
TCTCCGTTGCAGAAAAACACACGTACATAAACTTGCTAAGTTACACTATA
GAGTCCGGTAGGACTTCCAGAGGTCCAGGAACAAAATAGCCTTGGCATGT
ACAGTTTTAACCTGAATATTTCGATTTAAAAACACAAAGTCTTACCTCAG
CGTGGCCCCCTGATGATAATGTTTTATTGCATTTTTCACATCTTAAGCAT
GGTCTGTGCCAATCTTTACCAAGTGACGTCACTTTTTCAGCTACAATGTG
AGAAAAATTAAGAAATTGAAGTCATGTACATTACAGGAATTTTTTTACTT
TTAGTTTACTGATAATATCGTATCGTATCGGCTACGGCTATCTGCTAATC
CCCGATCGGGTCATATCAAAGACTTCATATTTAGTACAAAAATGGTACTT
GATGCCTCTCTGCTGAATGCTCAGCAATTAAAAGAAAGATTAAAGGTAAA
TGGAGCAATCCAGGGAGTGTCTCCCTCCCTACCCTTGGGTAGGCAATTTT
TTTGAGTCTCTTGAAATTCCTATGTGCTGCTTTGTTTTAGGAAAAATAAC
ACGCCCCATTCTCAAGACCACTTTATTAAATAATATATTGAGACGATAAA
AATACCTTTTGTTATGGCATTTAAAAATGTCAAACTAAGGGGAGATAACA
AACCTGTAGGTTTGTATAAGATTTACAGATTAACCAGCCCTCAGAATTTT
GATATGTTTTAGACTCGTTTAAATTGAGTAGTTTTTATTCTGACTTACTC
AGAGACATGAAGACACTGCAAATTTTTACCATTTTTTGATAAACTGAACA
ATTTCTCCCATTTTAAGAAAAGTCGAAAATAAAAGAATTTTTTACGACTT
TTTGAACACCGCAAGTATCAAAGGGTATGAATTTACGCTGTGACGACAAA
TGAGGATGAATACAAAAGTGACCATGACAATCATCGATGCAGTAGCGTAG
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050927-exon-scaffold_19-1575043694:669597..669806 | TCONS_00050927-exon-scaffold_19-1575043694:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050927-exon-scaffold_19-1575043694:668105..669562 | TCONS_00050927-exon-scaffold_19-1575043694:668105..669562 | Clytia hemisphaerica | exon |
| TCONS_00050927-exon-scaffold_19-1510915933:669597..669806 | TCONS_00050927-exon-scaffold_19-1510915933:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050927-exon-scaffold_19-1510915933:668105..669562 | TCONS_00050927-exon-scaffold_19-1510915933:668105..669562 | Clytia hemisphaerica | exon |
| TCONS_00050927-exon-scaffold_19-1491911889:669597..669806 | TCONS_00050927-exon-scaffold_19-1491911889:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050927-exon-scaffold_19-1491911889:668105..669562 | TCONS_00050927-exon-scaffold_19-1491911889:668105..669562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:668105..669806 - |
Blast
The following BLAST results are available for this feature:
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