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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050928 ID=TCONS_00050928|Name=TCONS_00050928|organism=Clytia hemisphaerica|type=transcript|length=1638bp
gTACAAGATCAAACTTTTTTAGTTATagctttaatttattttttcaagtt
aTATAAATCAATGACTTTAAATATAAATATTACACCATATATATGTATCA
Aagattcttttaaattttgccaaatttggcttaaattttattattaatat
tattattAGCTTAAAAGCTAatttagaattgttttttgaGCCTTGCTAAA
TACACACAAGGTTAAGAAAGCCCAAAAATGCGCTTAAACTAGGTAAAAGa
tataaaagataaaatatttttacaaggtTTCGTGGGCTACACCCTTGGTT
ATACTAATATTTGTGTGACTCGGCACCACCATGTCCGAAGCCTCCCGGCC
CAAAAAGAGCCGAATAACATGGTTTGTTGCAGTAAGGTTTTCCTTCATGc
tataataaagaaaaatatgagAATTATTACGAGATCGTACAATAAAAAAT
CAGAATTCCTTTATTGAAAGTATTGTCTCTTCCCTAAATTTTATACAAAT
AAAATACGTACAtctcaaatttagacagtagcaagtttatgtatttttcc
ttttttggggacggtggagtgactgaagcgattagGAGTAACCCGGAGTT
TTGATCCAAAAATTCAAGGACGGCAGAAGTGCTTTTTTTCCTTCATCCTC
AGATGATCGAGGATCTACCTAGTCAAACCAGAAGCATCTCCGTTGCAGAA
AAACACACGTACATAAACTTGCTAAGTTACACTATAGAGTCCGGTAGGAC
TTCCAGAGGTCCAGGAACAAAATAGCCTTGGCATGTACAGTTTTAACctg
aatatttcgatttaaaaacaCAAAGTCTTACCTCAGCGTGGCCCCCTGAT
GATAAtgttttattgcatttttcacATCTTAAGCATGGTCTGTGCCAATC
TTTACCaagtgacgtcactttttcagcTACAATGtgagaaaaattaagaa
attgaagTCATGTACATTACaggaatttttttacttttagtttACTGATA
ATATCGTATCGTATCGGCTACGGCTATCTGCTAATCCCCGATCGGGTCAT
ATCAAAGACTTCATATTTAgtacaaaaatggtacttgatgcctctctgct
gaatgctcagcaattaaaagaaagattaaaggtaaatggagcaatccagg
gagtgTCTCCCTCCCTACCCTTGGGTaggcaatttttttgagtctctTGA
AATTCCTATGTGCTGCTTTGTTTTAGGAAAAATAACACGCCCCATTCTCA
AGACCACTTTATTAAATAATATATTGAGACGATAAAAATACCTTTTGTTA
TGGCatttaaaaatgtcaaactaAGGGGAGATAACAAACCTGTAGGTTTG
TATAAGATTTACAGATTAACCAGCCCTCagaattttgatatgttttagaC
TCGTTTAAATTGAGTAGTTTTTATTCTGACTTACTCAGAGACATGAAGAC
ACTGcaaatttttaccattttttgataAACTGAACAATTTCTCCCATTTT
AAGAAAAGtcgaaaataaaagaattttttacGACTTTTTGAACACCGCAA
GTATCAAAGGGTATGAATTTACGCTGTGACGACAAATGAGGATGAATACA
AAAGTGACCATGACAATCATCGAtgcagtagcgtagcc Run BLAST on NCBI transcript from alignment at scaffold_19:668105..669806- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050928 ID=TCONS_00050928|Name=TCONS_00050928|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at scaffold_19:668105..669806- (Clytia hemisphaerica)
GTACAAGATCAAACTTTTTTAGTTATAGCTTTAATTTATTTTTTCAAGTT
ATATAAATCAATGACTTTAAATATAAATATTACACCATATATATGTATCA
AAGATTCTTTTAAATTTTGCCAAATTTGGCTTAAATTTTATTATTAATAT
TATTATTAGCTTAAAAGCTAATTTAGAATTGTTTTTTGAGCCTTGCTAAA
TACACACAAGGTTAAGAAAGCCCAAAAAATGNAATACACACAAGGTTAAG
AAAGCCTTGCTAAATACACACAAGGTTAAGAAAGCCCAAAAATGCGCTTA
AACTAGGTAAAAGATATAAAAGATAAAATATTTTTACAAGGTTTCGTGGG
CTACACCCTTGGTTATACTAATATTTGTGTGACTCGGCACCACCATGTCC
GAAGCCTCCCGGCCCAAAAAGAGCCGAATAACATGGTTTGTTGCAGTAAG
GTTTTCCTTCATGCTATAATAAAGAAAAATATGAGAATTATTACGAGATC
GTACAATAAAAAATCAGAATTCCTTTATTGAAAGTATTGTCTCTTCCCTA
AATTTTATACAAATAAAATACGTACATCTCAAATTTAGACAGTAGCAAGT
TTATGTATTTTTCCTTTTTTGGGGACGGTGGAGTGACTGAAGCGATTAGG
AGTAACCCGGAGTTTTGATCCAAAAATTCAAGGACGGCAGAAGTGCTTTT
TTTCCTTCATCCTCAGATGATCGAGGATCTACCTAGTCAAACCAGAAGCA
TCTCCGTTGCAGAAAAACACACGTACATAAACTTGCTAAGTTACACTATA
GAGTCCGGTAGGACTTCCAGAGGTCCAGGAACAAAATAGCCTTGGCATGT
ACAGTTTTAACCTGAATATTTCGATTTAAAAACACAAAGTCTTACCTCAG
CGTGGCCCCCTGATGATAATGTTTTATTGCATTTTTCACATCTTAAGCAT
GGTCTGTGCCAATCTTTACCAAGTGACGTCACTTTTTCAGCTACAATGTG
AGAAAAATTAAGAAATTGAAGTCATGTACATTACAGGAATTTTTTTACTT
TTAGTTTACTGATAATATCGTATCGTATCGGCTACGGCTATCTGCTAATC
CCCGATCGGGTCATATCAAAGACTTCATATTTAGTACAAAAATGGTACTT
GATGCCTCTCTGCTGAATGCTCAGCAATTAAAAGAAAGATTAAAGGTAAA
TGGAGCAATCCAGGGAGTGTCTCCCTCCCTACCCTTGGGTAGGCAATTTT
TTTGAGTCTCTTGAAATTCCTATGTGCTGCTTTGTTTTAGGAAAAATAAC
ACGCCCCATTCTCAAGACCACTTTATTAAATAATATATTGAGACGATAAA
AATACCTTTTGTTATGGCATTTAAAAATGTCAAACTAAGGGGAGATAACA
AACCTGTAGGTTTGTATAAGATTTACAGATTAACCAGCCCTCAGAATTTT
GATATGTTTTAGACTCGTTTAAATTGAGTAGTTTTTATTCTGACTTACTC
AGAGACATGAAGACACTGCAAATTTTTACCATTTTTTGATAAACTGAACA
ATTTCTCCCATTTTAAGAAAAGTCGAAAATAAAAGAATTTTTTACGACTT
TTTGAACACCGCAAGTATCAAAGGGTATGAATTTACGCTGTGACGACAAA
TGAGGATGAATACAAAAGTGACCATGACAATCATCGATGCAGTAGCGTAG
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050928-exon-scaffold_19-1575043694:669597..669806 | TCONS_00050928-exon-scaffold_19-1575043694:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050928-exon-scaffold_19-1575043694:668105..669532 | TCONS_00050928-exon-scaffold_19-1575043694:668105..669532 | Clytia hemisphaerica | exon |
| TCONS_00050928-exon-scaffold_19-1510915933:669597..669806 | TCONS_00050928-exon-scaffold_19-1510915933:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050928-exon-scaffold_19-1510915933:668105..669532 | TCONS_00050928-exon-scaffold_19-1510915933:668105..669532 | Clytia hemisphaerica | exon |
| TCONS_00050928-exon-scaffold_19-1491911889:669597..669806 | TCONS_00050928-exon-scaffold_19-1491911889:669597..669806 | Clytia hemisphaerica | exon |
| TCONS_00050928-exon-scaffold_19-1491911889:668105..669532 | TCONS_00050928-exon-scaffold_19-1491911889:668105..669532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:668105..669806 - |
Blast
The following BLAST results are available for this feature:
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