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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050934 ID=TCONS_00050934|Name=TCONS_00050934|organism=Clytia hemisphaerica|type=transcript|length=835bp
agttaTGTTCTCAAACGATGGGAGAGTAGAAGTCGTCACGCCGCAGGACT
CATTTGAAGAAAATGCACCAAGCTCAAACGACATTATGCACGCCTTGGCA
GCTTtgcagaaaaaagaaaacactctAAATCACCATAGGAACCAACATAA
CAACAACGATGTCGAAAAAACTAGAATTGGAATGCCTGCATGGAAATCAA
AGAAAGACGGGGGCTCTACCACGAAAAAAGAATCATGCATCAATAAAGTC
CCCTATGATCAATGCAGCCTCGAATTCATCAAACGCGGTACATGCAGCCC
TGAAAGTGGATTTGATTTCTTCGAAAACTGCCAACAATATTGTGAATTCT
GTGTCCCTGACCTCTtcggtgatgacgtcatcaaaacaaagaataaTGAT
GCTGAAAACAAAAGAGTTACAATTAAAGATAGTAGCCGAGCTGTGTCAAA
GACTGGCGGAAGTGAACCATACCCTTGGGACAACTGGAAGAAGGAAGACT
TGGAAAGAATTGCCAAGGACGGTGAGCAATGCGTGAACAAGGCACCCTAT
AACACGTGCAGCCTCCAATTTATCAAACGTGGGTCTTGCCAGTCTGATGA
AGATTTTGATTTCGTGAGAAATTGTCAACAATATTGTGAATTCTGTGTCC
CTGATTTGTCTGGTTAAAAACTGCAGAACTAAAAATTAACCGATTAACTG
GTTTTTGTAAGGCTTATAGAGTATTAAAAAGTTATCAGTAAAATTTTTAA
CACAGCCGTATTTTAAACATTCTTGTTGTTATTATTCTAATCGTTATAAC
AATTTTGGCCATAGGAAGTTTTGCTTAAAGTGGTT Run BLAST on NCBI protein sequence of TCONS_00050934-protein >TCONS_00050934-protein ID=TCONS_00050934-protein|Name=TCONS_00050934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
VMFSNDGRVEVVTPQDSFEENAPSSNDIMHALAALQKKENTLNHHRNQHN
NNDVEKTRIGMPAWKSKKDGGSTTKKESCINKVPYDQCSLEFIKRGTCSP
ESGFDFFENCQQYCEFCVPDLFGDDVIKTKNNDAENKRVTIKDSSRAVSK
TGGSEPYPWDNWKKEDLERIAKDGEQCVNKAPYNTCSLQFIKRGSCQSDE
DFDFVRNCQQYCEFCVPDLSG Run BLAST on NCBI transcript from alignment at scaffold_19:740985..742212- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050934 ID=TCONS_00050934|Name=TCONS_00050934|organism=Clytia hemisphaerica|type=transcript|length=1228bp|location=Sequence derived from alignment at scaffold_19:740985..742212- (Clytia hemisphaerica)
AGTTATGTTCTCAAACGATGGGAGAGTAGGTATGTTATGGTTGCATCAAT
TTTTGTCTTTATGTCTGAACTAGAAGAATTGTGCACACTTGAAGTATTGT
AGCTTAATTATTAAGTATTGCAAGGAAAAAACTTGACTTCAGAGCTTAGT
CTTCTTTTCCAAGACACCAATATTGTGTCGATTCGAAATTTTAGGTGTAC
ATTTTTCGAACTAAAACACCTTAAAATGCTACCTTTTCTTCTACAAAATT
TCACTATCAGAGGTTTCCTGATTTCTTGGGATTAATTTGGTTGATAATTA
AAATTTCCAGATGGAATGCAGGTTTAATTGGAAAAACTCACCAATGCCTT
TCCTTACATTGTTTAAAATAGAAAAGCCAAATGAATGTAAATAAAATAAC
TCTTTCTCATTTTTCCCCACAGAAGTCGTCACGCCGCAGGACTCATTTGA
AGAAAATGCACCAAGCTCAAACGACATTATGCACGCCTTGGCAGCTTTGC
AGAAAAAAGAAAACACTCTAAATCACCATAGGAACCAACATAACAACAAC
GATGTCGAAAAAACTAGAATTGGAATGCCTGCATGGAAATCAAAGAAAGA
CGGGGGCTCTACCACGAAAAAAGAATCATGCATCAATAAAGTCCCCTATG
ATCAATGCAGCCTCGAATTCATCAAACGCGGTACATGCAGCCCTGAAAGT
GGATTTGATTTCTTCGAAAACTGCCAACAATATTGTGAATTCTGTGTCCC
TGACCTCTTCGGTGATGACGTCATCAAAACAAAGAATAATGATGCTGAAA
ACAAAAGAGTTACAATTAAAGATAGTAGCCGAGCTGTGTCAAAGACTGGC
GGAAGTGAACCATACCCTTGGGACAACTGGAAGAAGGAAGACTTGGAAAG
AATTGCCAAGGACGGTGAGCAATGCGTGAACAAGGCACCCTATAACACGT
GCAGCCTCCAATTTATCAAACGTGGGTCTTGCCAGTCTGATGAAGATTTT
GATTTCGTGAGAAATTGTCAACAATATTGTGAATTCTGTGTCCCTGATTT
GTCTGGTTAAAAACTGCAGAACTAAAAATTAACCGATTAACTGGTTTTTG
TAAGGCTTATAGAGTATTAAAAAGTTATCAGTAAAATTTTTAACACAGCC
GTATTTTAAACATTCTTGTTGTTATTATTCTAATCGTTATAACAATTTTG
GCCATAGGAAGTTTTGCTTAAAGTGGTT Coding sequence (CDS) from alignment at scaffold_19:740985..742212- >TCONS_00050934 ID=TCONS_00050934|Name=TCONS_00050934|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_19:740985..742212- (Clytia hemisphaerica)
AAGTCGTCACGCCGCAGGACTCATTTGAAGAAAATGCACCAAGCTCAAAC
GACATTATGCACGCCTTGGCAGCTTTGCAGAAAAAAGAAAACACTCTAAA
TCACCATAGGAACCAACATAACAACAACGATGTCGAAAAAACTAGAATTG
GAATGCCTGCATGGAAATCAAAGAAAGACGGGGGCTCTACCACGAAAAAA
GAATCATGCATCAATAAAGTCCCCTATGATCAATGCAGCCTCGAATTCAT
CAAACGCGGTACATGCAGCCCTGAAAGTGGATTTGATTTCTTCGAAAACT
GCCAACAATATTGTGAATTCTGTGTCCCTGACCTCTTCGGTGATGACGTC
ATCAAAACAAAGAATAATGATGCTGAAAACAAAAGAGTTACAATTAAAGA
TAGTAGCCGAGCTGTGTCAAAGACTGGCGGAAGTGAACCATACCCTTGGG
ACAACTGGAAGAAGGAAGACTTGGAAAGAATTGCCAAGGACGGTGAGCAA
TGCGTGAACAAGGCACCCTATAACACGTGCAGCCTCCAATTTATCAAACG
TGGGTCTTGCCAGTCTGATGAAGATTTTGATTTCGTGAGAAATTGTCAAC
AATATTGTGAATTCTGTGTCCCTGATTTGTCTGGTTAAGTTATGTTCTCA
AACGATGGGAGAGTAGAAGTCGTCACGCCGCAGGACTCATTTGAAGAAAA
TGCACCAAGCTCAAACGACATTATGCACGCCTTGGCAGCTTTGCAGAAAA
AAGAAAACACTCTAAATCACCATAGGAACCAACATAACAACAACGATGTC
GAAAAAACTAGAATTGGAATGCCTGCATGGAAATCAAAGAAAGACGGGGG
CTCTACCACGAAAAAAGAATCATGCATCAATAAAGTCCCCTATGATCAAT
GCAGCCTCGAATTCATCAAACGCGGTACATGCAGCCCTGAAAGTGGATTT
GATTTCTTCGAAAACTGCCAACAATATTGTGAATTCTGTGTCCCTGACCT
CTTCGGTGATGACGTCATCAAAACAAAGAATAATGATGCTGAAAACAAAA
GAGTTACAATTAAAGATAGTAGCCGAGCTGTGTCAAAGACTGGCGGAAGT
GAACCATACCCTTGGGACAACTGGAAGAAGGAAGACTTGGAAAGAATTGC
CAAGGACGGTGAGCAATGCGTGAACAAGGCACCCTATAACACGTGCAGCC
TCCAATTTATCAAACGTGGGTCTTGCCAGTCTGATGAAGATTTTGATTTC
GTGAGAAATTGTCAACAATATTGTGAATTCTGTGTCCCTGATTTGTCTGG
TTAAGTTATGTTCTCAAACGATGGGAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050934-exon-scaffold_19-1575043694:742184..742212 | TCONS_00050934-exon-scaffold_19-1575043694:742184..742212 | Clytia hemisphaerica | exon |
| TCONS_00050934-exon-scaffold_19-1575043694:740985..741790 | TCONS_00050934-exon-scaffold_19-1575043694:740985..741790 | Clytia hemisphaerica | exon |
| TCONS_00050934-exon-scaffold_19-1510915933:742184..742212 | TCONS_00050934-exon-scaffold_19-1510915933:742184..742212 | Clytia hemisphaerica | exon |
| TCONS_00050934-exon-scaffold_19-1510915933:740985..741790 | TCONS_00050934-exon-scaffold_19-1510915933:740985..741790 | Clytia hemisphaerica | exon |
| TCONS_00050934-exon-scaffold_19-1491911889:742184..742212 | TCONS_00050934-exon-scaffold_19-1491911889:742184..742212 | Clytia hemisphaerica | exon |
| TCONS_00050934-exon-scaffold_19-1491911889:740985..741790 | TCONS_00050934-exon-scaffold_19-1491911889:740985..741790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:740985..742212 - |
Blast
The following BLAST results are available for this feature:
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