TCONS_00050935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050935
Unique NameTCONS_00050935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050935 ID=TCONS_00050935|Name=TCONS_00050935|organism=Clytia hemisphaerica|type=transcript|length=2036bp
GCATGCAACAAATTATTAATTCGTAAATTTTATTGCATGCAACAAATTAT
CCCTCATAAAACGGGATTGAAGTGAATAAATACGAGTTACCAGTTAAAAG
AATCTGCCACTAAGAGTAAACGGGTATTCTGTTAGGAGAGAGACGAGTAA
AAGCGAGGGAAGTTGTTTTGAGGGACGCAGGTTTTCTCGAAAGatatatt
aaaatttttgatttagaAAAGCTGGGGTAGGTTTTATTTATCAAAGTCAT
GGAGCATACAAGAAGGCACTCTGTACCAATTTTGACATCTTTTGATTTGG
TGACTACGACCACTTCAACAACAACTATATTCAACTGTGCTGCTAAAGAT
AAATTACAATTTTATACACCGCAACATGACCACAGCATACGCAAAAGTTA
CGCAAGTTACAAAGACCTTGCAAACGCACCAATCAAAAAAGAACGACCTC
GCATAACAAGACGCTCCTCAGTGCCATGTCTCTCATCCGAACGTTCACGA
CACAACAGCCTTAAAGTCATCTGCAAACGCTTAGATTTCTCCGCGGAAAC
TACTACGCCGTCAAATAAACGTCACCATCCCGACACGTCATTTAAAACAC
CATCATCTATGGCAACGGCTAAAACGTCAACCACTTTAAACGACGTCTTC
GCTGATCTACGCGTCGACCGAATCCAACCGCCTTCCAAGCGTGTACgttt
ttccgatgacgtcaaaGTAGCATGTCCACTAGCAACCACACCTATATCCA
ACCTACGTACACCAACATCGGGTAGATCTCGTCTTCAAAATTCACACCTC
TACACACCGCTATCAAGACTACGTCATCAAAGGACACCAGTCAGACAAAC
ACCTGTACAGAACGTAACTCCTCTTAAATCCGGCACTACTTCGGCACTAG
CGGCTTTGTCAGCATCTCGTGTCAGGTTCCAGAATACATCTGCCATTAAT
GCACCAGTATCAATGCCTGATTCTAAAAATAACTGGTTTTTTAAACCATC
AGCAGCTAAAAAGCCACAACTATTTGTTCAATCGAGTAGAACAACTCCAA
TGAAATTGCCCAACTCTGCTAATACACTGGCGTCAAAGAAACCATCAGAG
AATTTATTCAAGAAAACTCTTCAATCGACCAGAGCTGCTAAAGAGCTTGA
CTTattattgaaataaattttgaactgTTTTTGGTTCTGTTTAATTTCGC
TTTTTCATTGTTCCGCAGTTCTTATAATCTTATATTATTATCTTATAATT
TATCCTCGACTTATCTATGAATATTTTCATTCAGTCATATTTTCAGtgca
tttttcaaataaacTACGACTTAACTGTTAGCACCACAAATAATTCTCTC
ACATGGGCCTTGGCCGTTTTTTTGTTACCATTGATAGTATTATAAAATTT
ATATAcatatttaaatcaaaaaataatttatgttttAAGAATGCTGTTGA
ACGGTTCTACGTACTcaaatgtaaatattttctaaaatttgtaTCATATG
TTAATTACTCACtccaaaaatggaaaaataattaCGTTTACGACCTGTTT
TGAGGTCTGATAAATTAACTGACCATCTGTGTGTCCGTTCTCTCAATTat
cattgggctgttccataaaatttccatacagggacGAACGaagtggacga
accttttcaagtgaaaacaaatttttaggaaaagtgtagatacctcctgg
aaaatggcaaaatttgcaaaagaaccctggaaaaaattattttcatgtct
taaactgagggtggacgaactaaaatcagttgtTTACCTTCTGGAAATTC
aggaataactttttaccccgggaaaaatgaaaaaacacttcTTTAACCCT
CCCCTGTATGGTCATAAAATGGTATGACCCATTGCTCTGtgtatcatttt
atttTCAGTTTAGCTTTCAGTCGGTTTGCAAAAATGAAACGCATGATAAT
AGAAAAATATGGCCGATTTTCCTACTGTTGAAAATAGATAACTAAGTGAC
TTACATTGAAACTTTTCATCGAATGGCTCTTATGGG
Run BLAST on NCBI

protein sequence of TCONS_00050935-protein

>TCONS_00050935-protein ID=TCONS_00050935-protein|Name=TCONS_00050935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MEHTRRHSVPILTSFDLVTTTTSTTTIFNCAAKDKLQFYTPQHDHSIRKS
YASYKDLANAPIKKERPRITRRSSVPCLSSERSRHNSLKVICKRLDFSAE
TTTPSNKRHHPDTSFKTPSSMATAKTSTTLNDVFADLRVDRIQPPSKRVR
FSDDVKVACPLATTPISNLRTPTSGRSRLQNSHLYTPLSRLRHQRTPVRQ
TPVQNVTPLKSGTTSALAALSASRVRFQNTSAINAPVSMPDSKNNWFFKP
SAAKKPQLFVQSSRTTPMKLPNSANTLASKKPSENLFKKTLQSTRAAKEL
DLLLK
Run BLAST on NCBI

transcript from alignment at scaffold_19:767667..771766-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050935 ID=TCONS_00050935|Name=TCONS_00050935|organism=Clytia hemisphaerica|type=transcript|length=4100bp|location=Sequence derived from alignment at scaffold_19:767667..771766- (Clytia hemisphaerica)
GCATGCAACAAATTATTAATTCGTAAATTTTATTGCATGCAACAAATTAT
CCCTCATAAAACGGGATTGAAGTGAATAAATACGAGTTACCAGTTAAAAG
AATCTGCCACTAAGAGTAAACGGGTATTCTGTTAGGAGAGAGACGAGTAA
AAGCGAGGGAAGTTGTTTTGAGGGACGCAGGTTTTCTCGAAAGATATATT
AAAATTTTTGATTTAGAAAAGCTGGGGTAGGTTTTATTTATCAAAGTCAT
GGAGCATACAAGAAGGCACTCTGTACCAATTTTGACATCTTTTGATTTGG
TGACTACGACCACTTCAACAACAACTATATTCAACTGTGCTGCTAAAGAT
AAATTACAATTTTATACACCGCAACATGACCACAGCATACGCAAAAGGTA
GGGAAAAGTATTTCTTGTTTATGAATGACTTTTAGGGGCGGTTCAGAACT
AGGGGGGATGGACTTTTCTTGTAACACCCTTTAAATTTTGATCCAGTTGG
TCTTTTTGAAAGAGATTTGGCATAGGTGAAGCGAGATACCCTCCAAAATC
TATGGATGAGAGCGGTTTTTACGACACTGTGATTATTGTCCTAGATTTAT
CAAAAAATAATGAATATGTCATAAACGTCTGCACTCCCTCATAAGTTTTG
CAGGTTATCTCGTTACGCCTATGGCAGAACTAGGGAGGGGGGGCTCTCCT
TCAACACCCCTTAACGTTTGATCTAGTTGGTCTTTTTGAAAGAAATTTGG
AATACATGACTTTTGACAAAATAAATTTCGATAATGTCACTCATAATACC
TAAAGTGAGCAAAATCTGATAATTTCCTTTGTTCTTTGAAAAGAGCAATC
GTAAAAAAGTGAGGGCTTCAAAAAAAGTTCCCTGAGTTCGAAAGGCTTAT
TTTATCATAAATATTCAATAAGTTACAGTTTGAACAAAATTTGACAATTT
TTATGAAAACTCACTATACTGTCAGAAATGTTATCATGCTCAAGGTGTGT
AAATTTTTGGGAGTCGATGTTTTTTTTATTTTGAAGTTAAATAAAAGTTA
GGGATTTAATTTCAAAAGCTAGCAGTATTAGGGAATTCACCCATCGAACA
GGAAAAGACCCCTCCCTTAGGACAATGTAGGGTTGTTTCTTTGTCAGAAC
AGTTTCTTTAGTTTTAGGACCTACCCCGGTGGAGGTCCTATAAATTAACC
CCTGTCCGTTCTTCAGTCCGTCCGTTCGTTACCAACTTTTCTCGAGATTG
GCTCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGTGTAGCTATAAACC
CTCGAATGTGACGGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAAT
TTGGGCCAAAAAAAAGGTTAAAAAAGGATTTTTTGGACTTTGTGAAAAAT
TGGATCATTATTTTTTTCTCATTTTTTGCATGAAAGTAGGGTACCATCAT
AAGTAAAAGATGGCACAAGCAGATTTTTGCAAACAAATTTTGTTTGCTCA
AGAAACACATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAAT
GTATGTTCTTAGTCAAATTACTCAATTTTTTATGAGATATGTTTTTTTGC
TCATGAGGTCTTACATTTAAAGAATATGTGTGTTAGACATGACATTTTGG
TTGCTTTGCGTGTTTTTATAAAAAAGCTTGCCAAATTCGATATTTTTTTA
TAAGCACATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTT
ATTCTTTATGACTTTTTGCACAAAGATGCATAAGATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGAAGGGTAAAGATTTGTT
AATATTTTAGAGGATATATTTTATTTTTTACGTTAACAAAAACGAAAAGT
TTATTGTAAGTTTAAAAAGTGTACATTCTTTAGAGACCAAGCTGTGTTAT
TTATAAGAGATTAAACAAAATAAAATCACCAATTTTTCGAATTTTGTTTG
TAATATCTTCTTCATTCTTCTGTTATTTTCTGAAGTTTTGGAAATTATGA
TTCTAAAATATTCTTTGGCTGAGCCTCAAGGTATGCTTAGCATATGCTTG
ATTTTTCTGGAAATTTGAGCGTCAGTATGCTTATAAAAAAATGAGTGTAT
AATTTGCAAATTAACAATCTAATATAGGTTCTTCGTGTTGTTCGATTTAA
GTCTCAAATAAGACCGAAAGGAAAAAAGAGACATTTAGTATAAGATTCCT
ATTTCCACACTATGATTTCTTTGCCACTTTTCTAGCAAAAAAGGGAAAGA
TAGGCAGTTTCGTGAATAAACACAATTACCTATAGAAACAAACTCCTTCC
AATATCATGCCAGTTATCCTGGGAAAAACAGTGGAAAGGTTCCGGAAAAG
TGACAAATTTGAGTATGGCAATGAGAATCTTATACAAAACAACGATATGA
TTTACTTTCAGTTACGCAAGTTACAAAGACCTTGCAAACGCACCAATCAA
AAAAGAACGACCTCGCATAACAAGACGCTCCTCAGTGCCATGTCTCTCAT
CCGAACGTTCACGACACAACAGCCTTAAAGTCATCTGCAAACGCTTAGAT
TTCTCCGCGGAAACTACTACGCCGTCAAATAAACGTCACCATCCCGACAC
GTCATTTAAAACACCATCATCTATGGCAACGGCTAAAACGTCAACCACTT
TAAACGACGTCTTCGCTGATCTACGCGTCGACCGAATCCAACCGCCTTCC
AAGCGTGTACGTTTTTCCGATGACGTCAAAGTAGCATGTCCACTAGCAAC
CACACCTATATCCAACCTACGTACACCAACATCGGGTAGATCTCGTCTTC
AAAATTCACACCTCTACACACCGCTATCAAGACTACGTCATCAAAGGACA
CCAGTCAGACAAACACCTGTACAGAACGTAACTCCTCTTAAATCCGGCAC
TACTTCGGCACTAGCGGCTTTGTCAGCATCTCGTGTCAGGTTCCAGAATA
CATCTGCCATTAATGCACCAGTATCAATGCCTGATTCTAAAAATAACTGG
TTTTTTAAACCATCAGCAGCTAAAAAGCCACAACTATTTGTTCAATCGAG
TAGAACAACTCCAATGAAATTGCCCAACTCTGCTAATACACTGGCGTCAA
AGAAACCATCAGAGAATTTATTCAAGAAAACTCTTCAATCGACCAGAGCT
GCTAAAGAGCTTGACTTATTATTGAAATAAATTTTGAACTGTTTTTGGTT
CTGTTTAATTTCGCTTTTTCATTGTTCCGCAGTTCTTATAATCTTATATT
ATTATCTTATAATTTATCCTCGACTTATCTATGAATATTTTCATTCAGTC
ATATTTTCAGTGCATTTTTCAAATAAACTACGACTTAACTGTTAGCACCA
CAAATAATTCTCTCACATGGGCCTTGGCCGTTTTTTTGTTACCATTGATA
GTATTATAAAATTTATATACATATTTAAATCAAAAAATAATTTATGTTTT
AAGAATGCTGTTGAACGGTTCTACGTACTCAAATGTAAATATTTTCTAAA
ATTTGTATCATATGTTAATTACTCACTCCAAAAATGGAAAAATAATTACG
TTTACGACCTGTTTTGAGGTCTGATAAATTAACTGACCATCTGTGTGTCC
GTTCTCTCAATTATCATTGGGCTGTTCCATAAAATTTCCATACAGGGACG
AACGAAGTGGACGAACCTTTTCAAGTGAAAACAAATTTTTAGGAAAAGTG
TAGATACCTCCTGGAAAATGGCAAAATTTGCAAAAGAACCCTGGAAAAAA
TTATTTTCATGTCTTAAACTGAGGGTGGACGAACTAAAATCAGTTGTTTA
CCTTCTGGAAATTCAGGAATAACTTTTTACCCCGGGAAAAATGAAAAAAC
ACTTCTTTAACCCTCCCCTGTATGGTCATAAAATGGTATGACCCATTGCT
CTGTGTATCATTTTATTTTCAGTTTAGCTTTCAGTCGGTTTGCAAAAATG
AAACGCATGATAATAGAAAAATATGGCCGATTTTCCTACTGTTGAAAATA
GATAACTAAGTGACTTACATTGAAACTTTTCATCGAATGGCTCTTATGGG

Coding sequence (CDS) from alignment at scaffold_19:767667..771766-

>TCONS_00050935 ID=TCONS_00050935|Name=TCONS_00050935|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_19:767667..771766- (Clytia hemisphaerica)
TTACGCAAGTTACAAAGACCTTGCAAACGCACCAATCAAAAAAGAACGAC
CTCGCATAACAAGACGCTCCTCAGTGCCATGTCTCTCATCCGAACGTTCA
CGACACAACAGCCTTAAAGTCATCTGCAAACGCTTAGATTTCTCCGCGGA
AACTACTACGCCGTCAAATAAACGTCACCATCCCGACACGTCATTTAAAA
CACCATCATCTATGGCAACGGCTAAAACGTCAACCACTTTAAACGACGTC
TTCGCTGATCTACGCGTCGACCGAATCCAACCGCCTTCCAAGCGTGTACG
TTTTTCCGATGACGTCAAAGTAGCATGTCCACTAGCAACCACACCTATAT
CCAACCTACGTACACCAACATCGGGTAGATCTCGTCTTCAAAATTCACAC
CTCTACACACCGCTATCAAGACTACGTCATCAAAGGACACCAGTCAGACA
AACACCTGTACAGAACGTAACTCCTCTTAAATCCGGCACTACTTCGGCAC
TAGCGGCTTTGTCAGCATCTCGTGTCAGGTTCCAGAATACATCTGCCATT
AATGCACCAGTATCAATGCCTGATTCTAAAAATAACTGGTTTTTTAAACC
ATCAGCAGCTAAAAAGCCACAACTATTTGTTCAATCGAGTAGAACAACTC
CAATGAAATTGCCCAACTCTGCTAATACACTGGCGTCAAAGAAACCATCA
GAGAATTTATTCAAGAAAACTCTTCAATCGACCAGAGCTGCTAAAGAGCT
TGACTTATTATTGAAATAAATGGAGCATACAAGAAGGCACTCTGTACCAA
TTTTGACATCTTTTGATTTGGTGACTACGACCACTTCAACAACAACTATA
TTCAACTGTGCTGCTAAAGATAAATTACAATTTTATACACCGCAACATGA
CCACAGCATACGCAAAAGTTACGCAAGTTACAAAGACCTTGCAAACGCAC
CAATCAAAAAAGAACGACCTCGCATAACAAGACGCTCCTCAGTGCCATGT
CTCTCATCCGAACGTTCACGACACAACAGCCTTAAAGTCATCTGCAAACG
CTTAGATTTCTCCGCGGAAACTACTACGCCGTCAAATAAACGTCACCATC
CCGACACGTCATTTAAAACACCATCATCTATGGCAACGGCTAAAACGTCA
ACCACTTTAAACGACGTCTTCGCTGATCTACGCGTCGACCGAATCCAACC
GCCTTCCAAGCGTGTACGTTTTTCCGATGACGTCAAAGTAGCATGTCCAC
TAGCAACCACACCTATATCCAACCTACGTACACCAACATCGGGTAGATCT
CGTCTTCAAAATTCACACCTCTACACACCGCTATCAAGACTACGTCATCA
AAGGACACCAGTCAGACAAACACCTGTACAGAACGTAACTCCTCTTAAAT
CCGGCACTACTTCGGCACTAGCGGCTTTGTCAGCATCTCGTGTCAGGTTC
CAGAATACATCTGCCATTAATGCACCAGTATCAATGCCTGATTCTAAAAA
TAACTGGTTTTTTAAACCATCAGCAGCTAAAAAGCCACAACTATTTGTTC
AATCGAGTAGAACAACTCCAATGAAATTGCCCAACTCTGCTAATACACTG
GCGTCAAAGAAACCATCAGAGAATTTATTCAAGAAAACTCTTCAATCGAC
CAGAGCTGCTAAAGAGCTTGACTTATTATTGAAATAAATGGAGCATACAA
GAAGGCACTCTGTACCAATTTTGACATCTTTTGATTTGGTGACTACGACC
ACTTCAACAACAACTATATTCAACTGTGCTGCTAAAGATAAATTACAATT
TTATACACCGCAACATGACCACAGCATACGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032276XLOC_032276Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050935-proteinTCONS_00050935-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050935-exon-scaffold_19-1575043694:771370..771766TCONS_00050935-exon-scaffold_19-1575043694:771370..771766Clytia hemisphaericaexon
TCONS_00050935-exon-scaffold_19-1575043694:767667..769305TCONS_00050935-exon-scaffold_19-1575043694:767667..769305Clytia hemisphaericaexon
TCONS_00050935-exon-scaffold_19-1510915933:771370..771766TCONS_00050935-exon-scaffold_19-1510915933:771370..771766Clytia hemisphaericaexon
TCONS_00050935-exon-scaffold_19-1510915933:767667..769305TCONS_00050935-exon-scaffold_19-1510915933:767667..769305Clytia hemisphaericaexon
TCONS_00050935-exon-scaffold_19-1491911889:771370..771766TCONS_00050935-exon-scaffold_19-1491911889:771370..771766Clytia hemisphaericaexon
TCONS_00050935-exon-scaffold_19-1491911889:767667..769305TCONS_00050935-exon-scaffold_19-1491911889:767667..769305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:767667..771766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5737	14.4483	8.86064	5.67879	0.995107	0.993281	1.02434	1.07514	0.621819	0.709416	0.177063	0.426778	0.271208	0.228004	0.0110265	0.0473325	0.0437324	0.119531	0.330278	0.367213	0.33795	0.219787	35.3568	26.1528	0.500373	0.334928	1.17158	2.30176	25.993	28.0858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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