TCONS_00050945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050945
Unique NameTCONS_00050945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050945 ID=TCONS_00050945|Name=TCONS_00050945|organism=Clytia hemisphaerica|type=transcript|length=650bp
NNTGTTGATGTTCATTTCCTTACAGCCTTTCACCAATTGGCTGCCTTCGT
CACAGAGGAGTTGATTTGGAAATCCATGGTTTGCAGAGAATCTTGTGATG
GCTTGAATGAATGATGTGGTGCTGTAGTCATCCATGGTGTAAATCTTTGT
TGCTGTTGTGGAACAACAACAGAACACGATCAGCCAGATTTTCACAGTGG
TTCTCTTGTGTTGCGGTGCATAACATTGGTATGGTCCGGAAAGATCCAAT
CGAGTGTGATAAAATGCAGGAGCAATTGTCATGTTGCATCTTGAAATGGG
TCCCATTGACATCTCAATCGTCCTTTTTTCAAGAAAACGACAGCGTTGAC
AAGCTTTCTTGATCTGTTTCATAAGTGCACGTCCTTCAATGATGTGGCAC
TTCTTAAGCGTGTAGCGAAGTGTTGTTTCTATCCCTGAATGTTGCACAGT
TGGATGATGCCAGTGAGTTTCAAGGGCGATGCTGTATGCAACAGGTGAAT
ATCTGTCCATCACAGGTACGCAGAATGTATCTGATGATAGGTCTTTCNAA
GCTTTAGGGGTTTCTCATCGTTTGTAATCCAGTGAAGCGCAATCTGACTG
TCAGTGAATTTGATGTTGGATTTGTGATATTGACCAAATGAGCGTTTGAC
Run BLAST on NCBI

protein sequence of TCONS_00050945-protein

>TCONS_00050945-protein ID=TCONS_00050945-protein|Name=TCONS_00050945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MDRYSPVAYSIALETHWHHPTVQHSGIETTLRYTLKKCHIIEGRALMKQI
KKACQRCRFLEKRTIEMSMGPISRCNMTIAPAFYHTRLDLSGPYQCYAPQ
HKRTTVKIWLIVFCCCSTTATKIYTMDDYSTTSFIQAITRFSANHGFPNQ
LLCDEGSQLVKGCKEMNINX
Run BLAST on NCBI

transcript from alignment at scaffold_19:277784..278433

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050945 ID=TCONS_00050945|Name=TCONS_00050945|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_19:277784..278433 (Clytia hemisphaerica)
GTCAAACGCTCATTTGGTCAATATCACAAATCCAACATCAAATTCACTGA
CAGTCAGATTGCGCTTCACTGGATTACAAACGATGAGAAACCCCTAAAGC
TTNGAAAGACCTATCATCAGATACATTCTGCGTACCTGTGATGGACAGAT
ATTCACCTGTTGCATACAGCATCGCCCTTGAAACTCACTGGCATCATCCA
ACTGTGCAACATTCAGGGATAGAAACAACACTTCGCTACACGCTTAAGAA
GTGCCACATCATTGAAGGACGTGCACTTATGAAACAGATCAAGAAAGCTT
GTCAACGCTGTCGTTTTCTTGAAAAAAGGACGATTGAGATGTCAATGGGA
CCCATTTCAAGATGCAACATGACAATTGCTCCTGCATTTTATCACACTCG
ATTGGATCTTTCCGGACCATACCAATGTTATGCACCGCAACACAAGAGAA
CCACTGTGAAAATCTGGCTGATCGTGTTCTGTTGTTGTTCCACAACAGCA
ACAAAGATTTACACCATGGATGACTACAGCACCACATCATTCATTCAAGC
CATCACAAGATTCTCTGCAAACCATGGATTTCCAAATCAACTCCTCTGTG
ACGAAGGCAGCCAATTGGTGAAAGGCTGTAAGGAAATGAACATCAACANN

Coding sequence (CDS) from alignment at scaffold_19:277784..278433

>TCONS_00050945 ID=TCONS_00050945|Name=TCONS_00050945|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_19:277784..278433 (Clytia hemisphaerica)
ATGGACAGATATTCACCTGTTGCATACAGCATCGCCCTTGAAACTCACTG
GCATCATCCAACTGTGCAACATTCAGGGATAGAAACAACACTTCGCTACA
CGCTTAAGAAGTGCCACATCATTGAAGGACGTGCACTTATGAAACAGATC
AAGAAAGCTTGTCAACGCTGTCGTTTTCTTGAAAAAAGGACGATTGAGAT
GTCAATGGGACCCATTTCAAGATGCAACATGACAATTGCTCCTGCATTTT
ATCACACTCGATTGGATCTTTCCGGACCATACCAATGTTATGCACCGCAA
CACAAGAGAACCACTGTGAAAATCTGGCTGATCGTGTTCTGTTGTTGTTC
CACAACAGCAACAAAGATTTACACCATGGATGACTACAGCACCACATCAT
TCATTCAAGCCATCACAAGATTCTCTGCAAACCATGGATTTCCAAATCAA
CTCCTCTGTGACGAAGGCAGCCAATTGGTGAAAGGCTGTAAGGAAATGAA
CATCAACANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032286XLOC_032286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050945-exon-scaffold_19-1491911889:277784..278433TCONS_00050945-exon-scaffold_19-1491911889:277784..278433Clytia hemisphaericaexon
TCONS_00050945-exon-scaffold_19-1510915933:277784..278433TCONS_00050945-exon-scaffold_19-1510915933:277784..278433Clytia hemisphaericaexon
TCONS_00050945-exon-scaffold_19-1575043694:277784..278433TCONS_00050945-exon-scaffold_19-1575043694:277784..278433Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050945-proteinTCONS_00050945-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:277784..278433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611258	0.396636	0.899578	0.218287	0.650935	0.257189	0.620575	0.968291	0.278629	0.419859	0.16301	0.506998	1.74738	1.77097	0.0913625	0.196092	0.120785	0.309501	0.898862	0.999935	0.181618	0.113818	0	0.16772	0.777365	0.711976	0.330932	0	0.178583	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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