TCONS_00050947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050947
Unique NameTCONS_00050947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050947 ID=TCONS_00050947|Name=TCONS_00050947|organism=Clytia hemisphaerica|type=transcript|length=525bp
GGTAAACAAATCTCATATAACTTGTTCCAGAGATATTGTCCATATAAGAG
TTtgtatttcaaagcaaaaatatttctcgtactgcccatttttctcatca
attttTCAACTTGAACCAGTTTCACATCTCAATAGAATGTTAATACCATT
TTGCCGACCATTTAATGTCCGAAGTTATGGGGATGTAGCGTTTTCTTCAT
GTCAAGCAAATGTCTCtgaaatctttaagttggttggtttggtattcGGA
AGAGGTAATCCATGGATATCTTTGTAAACAATGAtgaaaaactcttgaaa
ttaCTGATGATTACAGTTGAAGTGTTACCCTCACATTTCATGTAATTATT
GGTCGCCAATTAGATGAAACTTGTATGTTTTTTGTTCGTCAGAAAAGAGT
TATTACTTTTAAAAAGCCAAGAGTGAATTTTCGACCATCTTGTATTTTGA
TCTGAATTATTCGTGTCTTGATTACTCAAAAACATGCGCGTAACATCAAG
GTAAATCCGTGCGATTTTGTCTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_19:308388..308912

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050947 ID=TCONS_00050947|Name=TCONS_00050947|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at scaffold_19:308388..308912 (Clytia hemisphaerica)
TTCAGACAAAATCGCACGGATTTACCTTGATGTTACGCGCATGTTTTTGA
GTAATCAAGACACGAATAATTCAGATCAAAATACAAGATGGTCGAAAATT
CACTCTTGGCTTTTTAAAAGTAATAACTCTTTTCTGACGAACAAAAAACA
TACAAGTTTCATCTAATTGGCGACCAATAATTACATGAAATGTGAGGGTA
ACACTTCAACTGTAATCATCAGtaatttcaagagtttttcaTCATTGTTT
ACAAAGATATCCATGGATTACCTCTTCCgaataccaaaccaaccaactta
aagatttcaGAGACATTTGCTTGACATGAAGAAAACGCTACATCCCCATA
ACTTCGGACATTAAATGGTCGGCAAAATGGTATTAACATTCTATTGAGAT
GTGAAACTGGTTCAAGTTGAaaaattgatgagaaaaatgggcagtacgag
aaatatttttgctttgaaatacaAACTCTTATATGGACAATATCTCTGGA
ACAAGTTATATGAGATTTGTTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032288XLOC_032288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050947-exon-scaffold_19-1491911889:308388..308912TCONS_00050947-exon-scaffold_19-1491911889:308388..308912Clytia hemisphaericaexon
TCONS_00050947-exon-scaffold_19-1510915933:308388..308912TCONS_00050947-exon-scaffold_19-1510915933:308388..308912Clytia hemisphaericaexon
TCONS_00050947-exon-scaffold_19-1575043694:308388..308912TCONS_00050947-exon-scaffold_19-1575043694:308388..308912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:308388..308912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0648	12.9686	8.32022	4.86564	142.83	86.3991	43.151	47.6131	14.2324	20.0705	16.7855	16.059	21.2448	16.4895	12.7912	16.0973	18.8594	14.174	18.6314	28.8271	35.5632	37.4857	26.0782	30.4253	16.6773	32.9607	83.4616	63.8	74.3394	71.2659
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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