TCONS_00050949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050949
Unique NameTCONS_00050949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050949 ID=TCONS_00050949|Name=TCONS_00050949|organism=Clytia hemisphaerica|type=transcript|length=254bp
ATCCACAGTAAAGATCGTCGGCAACTTTGGCTACGTAGCCGTTCTCAATA
AGTTCACCGAGGACGCGGGACATAAGCTCTTCTAATGCAGTTTCCGATCC
AGGCATGCCCATCGCAGATCTGGCGTAGACACGGGTGCCACGAAAAGGTG
TCGATATTCCACAATATTTAACAGAGTTTCTTGCAAGCGGAATTTGGTAG
AATGCTTGGGTGAGGTCGGTTTGGATGATATACTTCCACTGGCCAATTGA
TTGG
Run BLAST on NCBI

transcript from alignment at scaffold_19:338061..338314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050949 ID=TCONS_00050949|Name=TCONS_00050949|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_19:338061..338314 (Clytia hemisphaerica)
CCAATCAATTGGCCAGTGGAAGTATATCATCCAAACCGACCTCACCCAAG
CATTCTACCAAATTCCGCTTGCAAGAAACTCTGTTAAATATTGTGGAATA
TCGACACCTTTTCGTGGCACCCGTGTCTACGCCAGATCTGCGATGGGCAT
GCCTGGATCGGAAACTGCATTAGAAGAGCTTATGTCCCGCGTCCTCGGTG
AACTTATTGAGAACGGCTACGTAGCCAAAGTTGCCGACGATCTTTACTGT
GGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032290XLOC_032290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050949-exon-scaffold_19-1491911889:338061..338314TCONS_00050949-exon-scaffold_19-1491911889:338061..338314Clytia hemisphaericaexon
TCONS_00050949-exon-scaffold_19-1510915933:338061..338314TCONS_00050949-exon-scaffold_19-1510915933:338061..338314Clytia hemisphaericaexon
TCONS_00050949-exon-scaffold_19-1575043694:338061..338314TCONS_00050949-exon-scaffold_19-1575043694:338061..338314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:338061..338314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.608999	0	0	0	0.970889	1.53442	1.85121	0	1.21337	0.751478	0	0	0.478814	0	0	0.438716	0	2.21582	0	0	0	0.30213	0	0.674731	0	2.06959	2.40223	0	0.799085	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top