TCONS_00050951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050951
Unique NameTCONS_00050951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050951 ID=TCONS_00050951|Name=TCONS_00050951|organism=Clytia hemisphaerica|type=transcript|length=435bp
CACACAGACCATGGCATCTACAAAATCGTTCTTCCACTGGCCAACAATCA
AGACACAGAGATGGTCGGAGTCTGCATGGATAGGATTACAGCTACGTTTC
CATTCTATCCTCTCCAAGGAAAAGTTGAAAGAGACATCCAGCGTCATTAC
CAGGAGCAAGGTGGTGATCCAATGCAGTTACCAAGTCTTCCAAAACGAGT
CGGGGGAGATGTTGACTTCATGATTGGGATTCGACATCTTTCAAATTTCC
CAGAGAAGATCTTTGAACTTCCATCAGGATTAACAATTTACAAGTCAAAG
TTCAGAAGCGTCGATGGCAGCCAAGGAGTTATCGGTGGTCCACATGAAGT
ATTTGGAAGAGTCCATGCGTTCCATTCCTTCCAATCAAGCCACTTTATCA
ACAGCCAACTGAAGATCTATCGCCAAGGATACAAC
Run BLAST on NCBI

protein sequence of TCONS_00050951-protein

>TCONS_00050951-protein ID=TCONS_00050951-protein|Name=TCONS_00050951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
HTDHGIYKIVLPLANNQDTEMVGVCMDRITATFPFYPLQGKVERDIQRHY
QEQGGDPMQLPSLPKRVGGDVDFMIGIRHLSNFPEKIFELPSGLTIYKSK
FRSVDGSQGVIGGPHEVFGRVHAFHSFQSSHFINSQLKIYRQGYN
Run BLAST on NCBI

transcript from alignment at scaffold_19:346666..347100

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050951 ID=TCONS_00050951|Name=TCONS_00050951|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_19:346666..347100 (Clytia hemisphaerica)
GTTGTATCCTTGGCGATAGATCTTCAGTTGGCTGTTGATAAAGTGGCTTG
ATTGGAAGGAATGGAACGCATGGACTCTTCCAAATACTTCATGTGGACCA
CCGATAACTCCTTGGCTGCCATCGACGCTTCTGAACTTTGACTTGTAAAT
TGTTAATCCTGATGGAAGTTCAAAGATCTTCTCTGGGAAATTTGAAAGAT
GTCGAATCCCAATCATGAAGTCAACATCTCCCCCGACTCGTTTTGGAAGA
CTTGGTAACTGCATTGGATCACCACCTTGCTCCTGGTAATGACGCTGGAT
GTCTCTTTCAACTTTTCCTTGGAGAGGATAGAATGGAAACGTAGCTGTAA
TCCTATCCATGCAGACTCCGACCATCTCTGTGTCTTGATTGTTGGCCAGT
GGAAGAACGATTTTGTAGATGCCATGGTCTGTGTG

Coding sequence (CDS) from alignment at scaffold_19:346666..347100

>TCONS_00050951 ID=TCONS_00050951|Name=TCONS_00050951|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_19:346666..347100 (Clytia hemisphaerica)
GTTGTATCCTTGGCGATAGATCTTCAGTTGGCTGTTGATAAAGTGGCTTG
ATTGGAAGGAATGGAACGCATGGACTCTTCCAAATACTTCATGTGGACCA
CCGATAACTCCTTGGCTGCCATCGACGCTTCTGAACTTTGACTTGTAAAT
TGTTAATCCTGATGGAAGTTCAAAGATCTTCTCTGGGAAATTTGAAAGAT
GTCGAATCCCAATCATGAAGTCAACATCTCCCCCGACTCGTTTTGGAAGA
CTTGGTAACTGCATTGGATCACCACCTTGCTCCTGGTAATGACGCTGGAT
GTCTCTTTCAACTTTTCCTTGGAGAGGATAGAATGGAAACGTAGCTGTAA
TCCTATCCATGCAGACTCCGACCATCTCTGTGTCTTGATTGTTGGCCAGT
GGAAGAACGATTTTGTAGATGCCATGGTCTGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032292XLOC_032292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050951-exon-scaffold_19-1491911889:346666..347100TCONS_00050951-exon-scaffold_19-1491911889:346666..347100Clytia hemisphaericaexon
TCONS_00050951-exon-scaffold_19-1510915933:346666..347100TCONS_00050951-exon-scaffold_19-1510915933:346666..347100Clytia hemisphaericaexon
TCONS_00050951-exon-scaffold_19-1575043694:346666..347100TCONS_00050951-exon-scaffold_19-1575043694:346666..347100Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050951-proteinTCONS_00050951-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:346666..347100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622963	0.853424	0.259552	0.173893	0.423396	0.283633	0.201824	0.566836	0.26457	0.709774	0.477129	1.04549	0	0	0	0	0	0	0.166874	0	0	0	0.179992	0	0.337087	1.20337	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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