TCONS_00050957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050957
Unique NameTCONS_00050957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050957 ID=TCONS_00050957|Name=TCONS_00050957|organism=Clytia hemisphaerica|type=transcript|length=455bp
AAAAAATAGCAGCACAATAGCTTGATAGTGGCAACTTTTTAGCGTTTAAT
TTTTATCTTACTGCATACTGTGTTTCTTCAACTAAACTTATCAACACGTC
AAGCAAAAAAGTACACCTAAATCACTATTTTGAATCGCAATTTTAAGTCA
AAAGCTTGAAATGTTGCATAGAataaatttgtctttttatagggatataa
aaatccaaaaacaggctcagagaatGCTTGAAGGTTGCTTAATCCTAACA
TAAATTACATACAGTAAACATTCGAAGTTTTTataaacattcgaattctt
atgaaacattcgaattttttactttaaacATTCGATTACCTTTGCAATgg
cttcacaaaaaaataaagtagcTATACTGCAAAGTAgcttatactttttt
cataggctcaaggtaatgctttaacatatgcttaattttccccatatctg
agcct
Run BLAST on NCBI

transcript from alignment at scaffold_19:399494..399948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050957 ID=TCONS_00050957|Name=TCONS_00050957|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_19:399494..399948 (Clytia hemisphaerica)
aggctcagatatggggaaaattaagcatatgttaaagcattaccttgagc
ctatgaaaaaagtataagcTACTTTGCAGTATAgctactttatttttttg
tgaagccATTGCAAAGGTAATCGAATgtttaaagtaaaaaattcgaatgt
ttcataagaattcgaatgtttatAAAAACTTCGAATGTTTACTGTATGTA
ATTTATGTTAGGATTAAGCAACCTTCAAGCattctctgagcctgtttttg
gatttttatatccctataaaaagacaaatttatTCTATGCAACATTTCAA
GCTTTTGACTTAAAATTGCGATTCAAAATAGTGATTTAGGTGTACTTTTT
TGCTTGACGTGTTGATAAGTTTAGTTGAAGAAACACAGTATGCAGTAAGA
TAAAAATTAAACGCTAAAAAGTTGCCACTATCAAGCTATTGTGCTGCTAT
TTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032298XLOC_032298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050957-exon-scaffold_19-1491911889:399494..399948TCONS_00050957-exon-scaffold_19-1491911889:399494..399948Clytia hemisphaericaexon
TCONS_00050957-exon-scaffold_19-1510915933:399494..399948TCONS_00050957-exon-scaffold_19-1510915933:399494..399948Clytia hemisphaericaexon
TCONS_00050957-exon-scaffold_19-1575043694:399494..399948TCONS_00050957-exon-scaffold_19-1575043694:399494..399948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:399494..399948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.300653	0	0	1.40008	0.467308	0.760232	0.520752	0.644174	0.765735	0.146113	0.384195	0.109691	0	0.245676	0.122761	0	0.186041	0.415695	0	0.14335	0.539143	0.222857	0.150334	0	0	0.27087	0.59485	0.2236	0.706582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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