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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050958 ID=TCONS_00050958|Name=TCONS_00050958|organism=Clytia hemisphaerica|type=transcript|length=963bp
NCGAAAATGAGGAAATTCTCGTCTTGTTCAAGTCCCGATAGATATCCCGG
AATACCAATCTGCCGGAATTCTCCCAGAACATCAAGCTCGCGTTTATGGC
AAATCCAAACTTCCATGCAAAGCCAAGCGATCGCCGCCGCCGCAGCTACC
GCAGTGCGGACAAATGCGAGAGTATCCTCGATCGAGGAATCTATATGTTG
CAAGAAATTACCGTGAATTCCCAACCATTCACGATATTTTATGATACCGG
TTGCAGCGATTTCATTGTTACGCGAGATGCCGCTAACCGCTTGGGCCCCC
ATGCGACCCCTGGAAGCAGCGATCCGGTTACTATCTCTGGGGTCGGAGAC
AAAACCGATCAAACATCCGGTTCTTATGAGGTCCGATTACCGCTTTGCGA
CGGATCCAATGTAATCCTTACCGGATCGTGTCTCGACAAAATCGCAACAG
CGTTTCCCCTCTATGATCTTACCACAGCTTCAAATGATCTGATTACCGCT
GCTGCTGATGAAGCAGACCGCTTACCGAAACTTCCTTCATCTGTGGGAGG
GAAAATCGATATGATGATTGGGATACGCTATCTCAAGTACCATCCACGAA
TTATCTTCCAACTCTATACGGGCTTAACAATATACGAGTCTGTTTTCCAA
GGCTCCGACGGATCTAGAGGTGTCGTCGGTGGCCCTCACCCATCATTTTC
GATCCACAGTAACTTCTACTCCACTGAAGTGAATCTTAACCATGATCTAC
AATCTTCTGATGATGAGGAGCCTCACTCCACATTCTTCTTCAATCCTTTG
AAGTCTTTCAATCAGGCTGAAAGCATCGGTAGTGTAATCTCATACCGTTG
TCCGAATGTCGTGAATGTAAGGATTGTAAAAACCATGACTCTACCGAAGC
CATTAGTATCAGGGAGGATGCTGAGCAAACCATTATTAATTCTTCTGTTC
ATGTAGACCTTNN Run BLAST on NCBI protein sequence of TCONS_00050958-protein >TCONS_00050958-protein ID=TCONS_00050958-protein|Name=TCONS_00050958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MANPNFHAKPSDRRRRSYRSADKCESILDRGIYMLQEITVNSQPFTIFYD
TGCSDFIVTRDAANRLGPHATPGSSDPVTISGVGDKTDQTSGSYEVRLPL
CDGSNVILTGSCLDKIATAFPLYDLTTASNDLITAAADEADRLPKLPSSV
GGKIDMMIGIRYLKYHPRIIFQLYTGLTIYESVFQGSDGSRGVVGGPHPS
FSIHSNFYSTEVNLNHDLQSSDDEEPHSTFFFNPLKSFNQAESIGSVISY
RCPNVVNVRIVKTMTLPKPLVSGRMLSKPLLILLFM Run BLAST on NCBI transcript from alignment at scaffold_19:421087..422049 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050958 ID=TCONS_00050958|Name=TCONS_00050958|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at scaffold_19:421087..422049 (Clytia hemisphaerica)
NNAAGGTCTACATGAACAGAAGAATTAATAATGGTTTGCTCAGCATCCTC
CCTGATACTAATGGCTTCGGTAGAGTCATGGTTTTTACAATCCTTACATT
CACGACATTCGGACAACGGTATGAGATTACACTACCGATGCTTTCAGCCT
GATTGAAAGACTTCAAAGGATTGAAGAAGAATGTGGAGTGAGGCTCCTCA
TCATCAGAAGATTGTAGATCATGGTTAAGATTCACTTCAGTGGAGTAGAA
GTTACTGTGGATCGAAAATGATGGGTGAGGGCCACCGACGACACCTCTAG
ATCCGTCGGAGCCTTGGAAAACAGACTCGTATATTGTTAAGCCCGTATAG
AGTTGGAAGATAATTCGTGGATGGTACTTGAGATAGCGTATCCCAATCAT
CATATCGATTTTCCCTCCCACAGATGAAGGAAGTTTCGGTAAGCGGTCTG
CTTCATCAGCAGCAGCGGTAATCAGATCATTTGAAGCTGTGGTAAGATCA
TAGAGGGGAAACGCTGTTGCGATTTTGTCGAGACACGATCCGGTAAGGAT
TACATTGGATCCGTCGCAAAGCGGTAATCGGACCTCATAAGAACCGGATG
TTTGATCGGTTTTGTCTCCGACCCCAGAGATAGTAACCGGATCGCTGCTT
CCAGGGGTCGCATGGGGGCCCAAGCGGTTAGCGGCATCTCGCGTAACAAT
GAAATCGCTGCAACCGGTATCATAAAATATCGTGAATGGTTGGGAATTCA
CGGTAATTTCTTGCAACATATAGATTCCTCGATCGAGGATACTCTCGCAT
TTGTCCGCACTGCGGTAGCTGCGGCGGCGGCGATCGCTTGGCTTTGCATG
GAAGTTTGGATTTGCCATAAACGCGAGCTTGATGTTCTGGGAGAATTCCG
GCAGATTGGTATTCCGGGATATCTATCGGGACTTGAACAAGACGAGAATT
TCCTCATTTTCGN Coding sequence (CDS) from alignment at scaffold_19:421087..422049 >TCONS_00050958 ID=TCONS_00050958|Name=TCONS_00050958|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_19:421087..422049 (Clytia hemisphaerica)
CTACATGAACAGAAGAATTAATAATGGTTTGCTCAGCATCCTCCCTGATA
CTAATGGCTTCGGTAGAGTCATGGTTTTTACAATCCTTACATTCACGACA
TTCGGACAACGGTATGAGATTACACTACCGATGCTTTCAGCCTGATTGAA
AGACTTCAAAGGATTGAAGAAGAATGTGGAGTGAGGCTCCTCATCATCAG
AAGATTGTAGATCATGGTTAAGATTCACTTCAGTGGAGTAGAAGTTACTG
TGGATCGAAAATGATGGGTGAGGGCCACCGACGACACCTCTAGATCCGTC
GGAGCCTTGGAAAACAGACTCGTATATTGTTAAGCCCGTATAGAGTTGGA
AGATAATTCGTGGATGGTACTTGAGATAGCGTATCCCAATCATCATATCG
ATTTTCCCTCCCACAGATGAAGGAAGTTTCGGTAAGCGGTCTGCTTCATC
AGCAGCAGCGGTAATCAGATCATTTGAAGCTGTGGTAAGATCATAGAGGG
GAAACGCTGTTGCGATTTTGTCGAGACACGATCCGGTAAGGATTACATTG
GATCCGTCGCAAAGCGGTAATCGGACCTCATAAGAACCGGATGTTTGATC
GGTTTTGTCTCCGACCCCAGAGATAGTAACCGGATCGCTGCTTCCAGGGG
TCGCATGGGGGCCCAAGCGGTTAGCGGCATCTCGCGTAACAATGAAATCG
CTGCAACCGGTATCATAAAATATCGTGAATGGTTGGGAATTCACGGTAAT
TTCTTGCAACATATAGATTCCTCGATCGAGGATACTCTCGCATTTGTCCG
CACTGCGGTAGCTGCGGCGGCGGCGATCGCTTGGCTTTGCATGGAAGTTT
GGATTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050958-exon-scaffold_19-1491911889:421087..422049 | TCONS_00050958-exon-scaffold_19-1491911889:421087..422049 | Clytia hemisphaerica | exon |
| TCONS_00050958-exon-scaffold_19-1510915933:421087..422049 | TCONS_00050958-exon-scaffold_19-1510915933:421087..422049 | Clytia hemisphaerica | exon |
| TCONS_00050958-exon-scaffold_19-1575043694:421087..422049 | TCONS_00050958-exon-scaffold_19-1575043694:421087..422049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:421087..422049 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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