TCONS_00050960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050960
Unique NameTCONS_00050960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050960 ID=TCONS_00050960|Name=TCONS_00050960|organism=Clytia hemisphaerica|type=transcript|length=390bp
TctaacacaggaaaaaatgttaaaaacccaGGCCTGGGAACAGGGCATTT
TCGGGGTGGGAAATGCCTGTTTTCGGGGGTGGGATTTGGGTTTGGAACAT
GAAACATGCCAAAGGCATTTCGCAATTGCATTTCGAAATTGCCCTGTTCC
CAGGTCAAGGATATTAAAATTTCGGGGCCGAAAATGGCCTGTTTCCAGGC
CTGTGTTTTCAACATTTCGGGGCTGAATTTGGCCTGTTCCCAAGGgctag
attttcaaactttcggGGTCGAAAATTGCTAGTTTTCAGGTCGGTGTTTT
TAGTAGACAAAAATCACGGGTTGTGGAGCTGGTCATTTTCGGccccgaaa
ttaaaaaaaatccggGGTGGAAAATGCTTCATATTCCANN
Run BLAST on NCBI

transcript from alignment at scaffold_19:470897..471286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050960 ID=TCONS_00050960|Name=TCONS_00050960|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_19:470897..471286 (Clytia hemisphaerica)
NNTGGAATATGAAGCATTTTCCACCccggattttttttaatttcggggCC
GAAAATGACCAGCTCCACAACCCGTGATTTTTGTCTACTAAAAACACCGA
CCTGAAAACTAGCAATTTTCGACCccgaaagtttgaaaatctagcCCTTG
GGAACAGGCCAAATTCAGCCCCGAAATGTTGAAAACACAGGCCTGGAAAC
AGGCCATTTTCGGCCCCGAAATTTTAATATCCTTGACCTGGGAACAGGGC
AATTTCGAAATGCAATTGCGAAATGCCTTTGGCATGTTTCATGTTCCAAA
CCCAAATCCCACCCCCGAAAACAGGCATTTCCCACCCCGAAAATGCCCTG
TTCCCAGGCCtgggtttttaacattttttcctgtgttagA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032301XLOC_032301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050960-exon-scaffold_19-1491911889:470897..471286TCONS_00050960-exon-scaffold_19-1491911889:470897..471286Clytia hemisphaericaexon
TCONS_00050960-exon-scaffold_19-1510915933:470897..471286TCONS_00050960-exon-scaffold_19-1510915933:470897..471286Clytia hemisphaericaexon
TCONS_00050960-exon-scaffold_19-1575043694:470897..471286TCONS_00050960-exon-scaffold_19-1575043694:470897..471286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:470897..471286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784039	0.573421	1.55353	2.38839	3.17196	5.4308	8.31604	12.2679	3.1383	7.16079	4.9646	2.34974	2.99828	1.75994	0.890406	0.238885	0.294287	0	0.83345	0.654109	0.758053	0.554627	32.5783	35.3366	1.68357	2.44164	38.9201	19.7256	210.56	134.307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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