TCONS_00050974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050974
Unique NameTCONS_00050974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050974 ID=TCONS_00050974|Name=TCONS_00050974|organism=Clytia hemisphaerica|type=transcript|length=648bp
AGACCGGGGATTGCACCCACGATCTTGCTCAGCGTTACCATATAGAGGTT
TCTCATGTTTTGTTAACTTACGTtacttccgccattatggaagcaaacgt
tcgatttgcgtaaggtATCAACtatacagattcgaacgtttgcttccata
atggttgAAGTTgcgtaacttaacaaaacatcTAAAACTTCTATTCGGTA
ACTTTGCACTACGGTCGAATCCGAATCTAAATAAgtcctttttgaaaatt
ctgacTATAAGGACCAACTATAATTTTATTCTTTCGGGTGCCTTTCTATT
CGATCCTGAAAGTCAGTTTCACAATTATCGTATAACCACAATTTCTGTAT
TATTTATCTTtccaaattattttatttaaaaagtagaaatGTAAAGAATT
ATTATAAGCTAGAGGTATaaatattattcagaaaatgtaTAAGCTTGAAA
TATATTCTCATTAACCgtatgcaaagttttttttgacCATCAACATTCNT
TCACAATATTCGTATAACCACAATTTCTGTATTATTTATCTTtccaaatt
attttatttaaaaagtagaaatGTAAAGAATTATTATAAGCTAGAGGTAT
aaatattattcagaaaatgtaTAAGCTTGAAATATATTCTCATTAACC
Run BLAST on NCBI

transcript from alignment at scaffold_19:740274..740921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050974 ID=TCONS_00050974|Name=TCONS_00050974|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at scaffold_19:740274..740921 (Clytia hemisphaerica)
GGTTAATGAGAATATATTTCAAGCTTAtacattttctgaataatatttAT
ACCTCTAGCTTATAATAATTCTTTACatttctactttttaaataaaataa
tttggaAAGATAAATAATACAGAAATTGTGGTTATACGAATATTGTGAAN
GAATGTTGATGgtcaaaaaaaactttgcatacGGTTAATGAGAATATATT
TCAAGCTTAtacattttctgaataatatttATACCTCTAGCTTATAATAA
TTCTTTACatttctactttttaaataaaataatttggaAAGATAAATAAT
ACAGAAATTGTGGTTATACGATAATTGTGAAACTGACTTTCAGGATCGAA
TAGAAAGGCACCCGAAAGAATAAAATTATAGTTGGTCCTTATAgtcagaa
ttttcaaaaaggacTTATTTAGATTCGGATTCGACCGTAGTGCAAAGTTA
CCGAATAGAAGTTTTAgatgttttgttaagttacgcAACTTcaaccatta
tggaagcaaacgttcgaatctgtataGTTGATaccttacgcaaatcgaac
gtttgcttccataatggcggaagtaACGTAAGTTAACAAAACATGAGAAA
CCTCTATATGGTAACGCTGAGCAAGATCGTGGGTGCAATCCCCGGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032315XLOC_032315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050974-exon-scaffold_19-1491911889:740274..740921TCONS_00050974-exon-scaffold_19-1491911889:740274..740921Clytia hemisphaericaexon
TCONS_00050974-exon-scaffold_19-1510915933:740274..740921TCONS_00050974-exon-scaffold_19-1510915933:740274..740921Clytia hemisphaericaexon
TCONS_00050974-exon-scaffold_19-1575043694:740274..740921TCONS_00050974-exon-scaffold_19-1575043694:740274..740921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:740274..740921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0808149	0	0.0915028	0.358085	0.217967	0	0.207801	0	0.204303	0.168709	0.327505	0.215289	2.74112	1.9536	0.826009	0.738695	2.06269	2.05201	1.97588	1.82032	3.75055	3.4301	1.29725	1.34787	0.954441	0.851816	0.221627	0.236526	0.269095	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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