TCONS_00051002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051002
Unique NameTCONS_00051002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051002 ID=TCONS_00051002|Name=TCONS_00051002|organism=Clytia hemisphaerica|type=transcript|length=2352bp
TCCACTTGCGGTGTATGCCTGCTGGATATCTTTCATGACGTCTGTCAGTG
GATATTGTGGGAATGTTTCTGTGATGGATTCCATACAAATTCCTGAGACG
ACGGCTTCTTCTCCATTGAACATTGGTAGTCGAACACTGTATTCACCATG
TGTCGTCATTGTTGATGTGCAGCCAACTCCTCCAATGCGTTTTGGTTGTG
CTGAGAGTTGAGTTGTATTGCCACCAAGAAGTGGGATTGCTCACTTCTTG
ACGATAAAGTCAGAACATCCATTGTCGAATAATAGTGTCAAACGATTGTT
GTTGATGTTGATTGATTGAAGAAGATAGATTCCTCTCTCATCCTTGTCTT
CTGGAGTTGACTTCGTTGGGAAGGCTGAATAGTAGATGCTGATGTCCTTG
GCAAATGTTGGAAGGTTGGCGTTCTTCATGTACCTGTCTTTGAAGCGTTG
AAGGACTTCTTGATTTGCTGGTAGGCTTTTGTGTTCCTCACAGACAAGAA
CATGCTTGCGGATGGGATACTTCGCATGGGATTCATGTGGGCAGATGAAC
GTATCTTGACGTTTCCCATCTCGATGTCGTCCATTTGAACTGCTGGCACC
AGGAAACAAGCATTGATGACAAAATCCCTTCTTTCGGAGGAAGGAATATC
GGTTTGCAGGTGTCATCTCAGCAAATTGCTTGCAGGTGAAGTATTGAATG
AGTTGCATCTTGTTAGGTCCAATGGTTGCCACGTGATCATTGCTGCCAAT
GGAACTGTCGCATACAGAACATGTTGGATCTTGAGGTGGGCCATTCTGAT
AGGTGTTGCCTGATGATGAACCTTTGTTGCCACGGTTACCTTTTTGATCT
TGTCGAGGTGGCTGTCGTTTCTTCTCAGGTGCTGAGCTGTAGATAAGAAC
TTTCTGCTGTTCAAGCTGCAATTCCTTTTCGAGGAATTGGATGAATCGTA
ACCAGGTGGTCTTTGGTGAAAGCGTGTCGTTGGAGATTGAAGTCAGCCAT
CTTGTCAATCTAGTGGAGCCAATGGTACGATAGATTTGATTCAGACCATC
ACCGTAGAAAAGATGTTCTTCGATTTGGTGCTGTTCAGCTAGTGAAATCA
ATTCCTTTAGTGTATTGATAAGGTTGTTCAGAGTGTCGATTAGATGTTCA
GAGTCTTGTCTTCGACCAAGAGATTCATTTTCGATGATCGTTTTCAGCTT
CTTTGCAAGTAACAGTTTGGTGTCTCCGTAGGCAGACTTCAGCCGGGCCC
AGATGACGTTGATGTCTTCGAGGGTCTTGACAAGAGATAAAGCACCTCCT
TTTAGCAGATTGTTCTTTAGCAGATCAGGTAGCATATGATGTGGAGTTGT
TCGTTTGTATATCTTCTCGAAGGCTGTCTGAAATGTGTAGATGTCCATTG
AACTTTCATACCCCGAGAATTTGTCCAGTTTGATGTTGAGCTTGGATTCA
TCAAATGTCCGTTGTTTGTAGACGTCTCTGGAAATGATTTCCTTGTCAAG
GTCTCCTTGATATTTGGTCTCAGATTCGCAAAGCTTTTTCTGGGCTATGC
CGATTTTATCAAGTTCAGTGAGAAGCGTTGGATCAGTGATATCTTGTTGA
AGTAAACGTTCATACCTCTCTGAAATAGTGATGACAGTGTTGTTGATAGA
TGTTGATGCCTCCTTGAGTTGAATGAGATTTGAGTCACTCAAATCCTTGA
AGTCAGATATCAGGGATGGGATGGCTTGATGTTGTCAATCGTTTGCTTGA
TTGATTCAATGCTCAGCTTGGCGCGTTTTGCTTTGGCATCATCGGATATC
TTTGTTGAATCCTGTTCATTTTGATTGAGTTGTCGTTTGTACGCATGGGA
AGTAGTCACAAACATCTTGATTGAATCGAGGGTTGTTTTGATGAATGATA
AGAGTTTGGTTTCCTCTGGGGTGGGCTCTTCAGATGTCATATTGTTGATA
ACATCCAAACGATGCTGACGCAATAAAGCACGTATCTCTTCCAATCTTTG
AAGAATATTGTTCAGTTCTGTTAGCGGACAGCCAACTACTTCTACTTCAT
CGACAATGTCGCCTACTTCATGAGGATAACTTTGTTCATGACAGATGCCA
TTGTGAATAAGGGATTTGACGTTTCCGCTCTGATAGAGTCGATTGAAGAA
ATCAATTGTTCAAGTGATAAAGAATGAGTGTCGAGTGATTGTAAAGTAGT
TTCAAGCGTAAGTTTATTTACCTCAACTGATTTGATAATTGGTCGTAGAG
TGATGTCGTCAAAGTTTAAGACAGACGGCAAGTTATTTGAGTCAGTATAT
TGTTGATGAGATGAATCAAATACAGATTGTTGATGTGGGGGTTGATCGAC
TA
Run BLAST on NCBI

protein sequence of TCONS_00051002-protein

>TCONS_00051002-protein ID=TCONS_00051002-protein|Name=TCONS_00051002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MDIYTFQTAFEKIYKRTTPHHMLPDLLKNNLLKGGALSLVKTLEDINVIW
ARLKSAYGDTKLLLAKKLKTIIENESLGRRQDSEHLIDTLNNLINTLKEL
ISLAEQHQIEEHLFYGDGLNQIYRTIGSTRLTRWLTSISNDTLSPKTTWL
RFIQFLEKELQLEQQKVLIYSSAPEKKRQPPRQDQKGNRGNKGSSSGNTY
QNGPPQDPTCSVCDSSIGSNDHVATIGPNKMQLIQYFTCKQFAEMTPANR
YSFLRKKGFCHQCLFPGASSSNGRHRDGKRQDTFICPHESHAKYPIRKHV
LVCEEHKSLPANQEVLQRFKDRYMKNANLPTFAKDISIYYSAFPTKSTPE
DKDERGIYLLQSININNNRLTLLFDNGCSDFIVKK
Run BLAST on NCBI

transcript from alignment at scaffold_191:76665..79016

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051002 ID=TCONS_00051002|Name=TCONS_00051002|organism=Clytia hemisphaerica|type=transcript|length=2352bp|location=Sequence derived from alignment at scaffold_191:76665..79016 (Clytia hemisphaerica)
TAGTCGATCAACCCCCACATCAACAATCTGTATTTGATTCATCTCATCAA
CAATATACTGACTCAAATAACTTGCCGTCTGTCTTAAACTTTGACGACAT
CACTCTACGACCAATTATCAAATCAGTTGAGGTAAATAAACTTACGCTTG
AAACTACTTTACAATCACTCGACACTCATTCTTTATCACTTGAACAATTG
ATTTCTTCAATCGACTCTATCAGAGCGGAAACGTCAAATCCCTTATTCAC
AATGGCATCTGTCATGAACAAAGTTATCCTCATGAAGTAGGCGACATTGT
CGATGAAGTAGAAGTAGTTGGCTGTCCGCTAACAGAACTGAACAATATTC
TTCAAAGATTGGAAGAGATACGTGCTTTATTGCGTCAGCATCGTTTGGAT
GTTATCAACAATATGACATCTGAAGAGCCCACCCCAGAGGAAACCAAACT
CTTATCATTCATCAAAACAACCCTCGATTCAATCAAGATGTTTGTGACTA
CTTCCCATGCGTACAAACGACAACTCAATCAAAATGAACAGGATTCAACA
AAGATATCCGATGATGCCAAAGCAAAACGCGCCAAGCTGAGCATTGAATC
AATCAAGCAAACGATTGACAACATCAAGCCATCCCATCCCTGATATCTGA
CTTCAAGGATTTGAGTGACTCAAATCTCATTCAACTCAAGGAGGCATCAA
CATCTATCAACAACACTGTCATCACTATTTCAGAGAGGTATGAACGTTTA
CTTCAACAAGATATCACTGATCCAACGCTTCTCACTGAACTTGATAAAAT
CGGCATAGCCCAGAAAAAGCTTTGCGAATCTGAGACCAAATATCAAGGAG
ACCTTGACAAGGAAATCATTTCCAGAGACGTCTACAAACAACGGACATTT
GATGAATCCAAGCTCAACATCAAACTGGACAAATTCTCGGGGTATGAAAG
TTCAATGGACATCTACACATTTCAGACAGCCTTCGAGAAGATATACAAAC
GAACAACTCCACATCATATGCTACCTGATCTGCTAAAGAACAATCTGCTA
AAAGGAGGTGCTTTATCTCTTGTCAAGACCCTCGAAGACATCAACGTCAT
CTGGGCCCGGCTGAAGTCTGCCTACGGAGACACCAAACTGTTACTTGCAA
AGAAGCTGAAAACGATCATCGAAAATGAATCTCTTGGTCGAAGACAAGAC
TCTGAACATCTAATCGACACTCTGAACAACCTTATCAATACACTAAAGGA
ATTGATTTCACTAGCTGAACAGCACCAAATCGAAGAACATCTTTTCTACG
GTGATGGTCTGAATCAAATCTATCGTACCATTGGCTCCACTAGATTGACA
AGATGGCTGACTTCAATCTCCAACGACACGCTTTCACCAAAGACCACCTG
GTTACGATTCATCCAATTCCTCGAAAAGGAATTGCAGCTTGAACAGCAGA
AAGTTCTTATCTACAGCTCAGCACCTGAGAAGAAACGACAGCCACCTCGA
CAAGATCAAAAAGGTAACCGTGGCAACAAAGGTTCATCATCAGGCAACAC
CTATCAGAATGGCCCACCTCAAGATCCAACATGTTCTGTATGCGACAGTT
CCATTGGCAGCAATGATCACGTGGCAACCATTGGACCTAACAAGATGCAA
CTCATTCAATACTTCACCTGCAAGCAATTTGCTGAGATGACACCTGCAAA
CCGATATTCCTTCCTCCGAAAGAAGGGATTTTGTCATCAATGCTTGTTTC
CTGGTGCCAGCAGTTCAAATGGACGACATCGAGATGGGAAACGTCAAGAT
ACGTTCATCTGCCCACATGAATCCCATGCGAAGTATCCCATCCGCAAGCA
TGTTCTTGTCTGTGAGGAACACAAAAGCCTACCAGCAAATCAAGAAGTCC
TTCAACGCTTCAAAGACAGGTACATGAAGAACGCCAACCTTCCAACATTT
GCCAAGGACATCAGCATCTACTATTCAGCCTTCCCAACGAAGTCAACTCC
AGAAGACAAGGATGAGAGAGGAATCTATCTTCTTCAATCAATCAACATCA
ACAACAATCGTTTGACACTATTATTCGACAATGGATGTTCTGACTTTATC
GTCAAGAAGTGAGCAATCCCACTTCTTGGTGGCAATACAACTCAACTCTC
AGCACAACCAAAACGCATTGGAGGAGTTGGCTGCACATCAACAATGACGA
CACATGGTGAATACAGTGTTCGACTACCAATGTTCAATGGAGAAGAAGCC
GTCGTCTCAGGAATTTGTATGGAATCCATCACAGAAACATTCCCACAATA
TCCACTGACAGACGTCATGAAAGATATCCAGCAGGCATACACCGCAAGTG
GA

Coding sequence (CDS) from alignment at scaffold_191:76665..79016

>TCONS_00051002 ID=TCONS_00051002|Name=TCONS_00051002|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_191:76665..79016 (Clytia hemisphaerica)
ATGGACATCTACACATTTCAGACAGCCTTCGAGAAGATATACAAACGAAC
AACTCCACATCATATGCTACCTGATCTGCTAAAGAACAATCTGCTAAAAG
GAGGTGCTTTATCTCTTGTCAAGACCCTCGAAGACATCAACGTCATCTGG
GCCCGGCTGAAGTCTGCCTACGGAGACACCAAACTGTTACTTGCAAAGAA
GCTGAAAACGATCATCGAAAATGAATCTCTTGGTCGAAGACAAGACTCTG
AACATCTAATCGACACTCTGAACAACCTTATCAATACACTAAAGGAATTG
ATTTCACTAGCTGAACAGCACCAAATCGAAGAACATCTTTTCTACGGTGA
TGGTCTGAATCAAATCTATCGTACCATTGGCTCCACTAGATTGACAAGAT
GGCTGACTTCAATCTCCAACGACACGCTTTCACCAAAGACCACCTGGTTA
CGATTCATCCAATTCCTCGAAAAGGAATTGCAGCTTGAACAGCAGAAAGT
TCTTATCTACAGCTCAGCACCTGAGAAGAAACGACAGCCACCTCGACAAG
ATCAAAAAGGTAACCGTGGCAACAAAGGTTCATCATCAGGCAACACCTAT
CAGAATGGCCCACCTCAAGATCCAACATGTTCTGTATGCGACAGTTCCAT
TGGCAGCAATGATCACGTGGCAACCATTGGACCTAACAAGATGCAACTCA
TTCAATACTTCACCTGCAAGCAATTTGCTGAGATGACACCTGCAAACCGA
TATTCCTTCCTCCGAAAGAAGGGATTTTGTCATCAATGCTTGTTTCCTGG
TGCCAGCAGTTCAAATGGACGACATCGAGATGGGAAACGTCAAGATACGT
TCATCTGCCCACATGAATCCCATGCGAAGTATCCCATCCGCAAGCATGTT
CTTGTCTGTGAGGAACACAAAAGCCTACCAGCAAATCAAGAAGTCCTTCA
ACGCTTCAAAGACAGGTACATGAAGAACGCCAACCTTCCAACATTTGCCA
AGGACATCAGCATCTACTATTCAGCCTTCCCAACGAAGTCAACTCCAGAA
GACAAGGATGAGAGAGGAATCTATCTTCTTCAATCAATCAACATCAACAA
CAATCGTTTGACACTATTATTCGACAATGGATGTTCTGACTTTATCGTCA
AGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032334XLOC_032334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051002-proteinTCONS_00051002-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051002-exon-scaffold_191-1491911889:76665..79016TCONS_00051002-exon-scaffold_191-1491911889:76665..79016Clytia hemisphaericaexon
TCONS_00051002-exon-scaffold_191-1510915933:76665..79016TCONS_00051002-exon-scaffold_191-1510915933:76665..79016Clytia hemisphaericaexon
TCONS_00051002-exon-scaffold_191-1575043694:76665..79016TCONS_00051002-exon-scaffold_191-1575043694:76665..79016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_191supercontigscaffold_191:76665..79016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20796	1.24528	1.15793	0.948857	1.59857	1.84964	0.72848	0.922163	0.459937	0.802026	0.51574	0.644087	0.490107	0.751813	0.777559	0.633619	0.490408	0.343842	0.601339	1.25309	0.73657	0.775779	0.294378	0.321256	0.945373	0.787532	0.445687	0.41059	0.463679	0.414275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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