|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051003 ID=TCONS_00051003|Name=TCONS_00051003|organism=Clytia hemisphaerica|type=transcript|length=1376bp
NCAGTTTCATGTCTTTACATCCTTTGACTAGTTGAGTACCCTCGTCACAA
AGAAGTTTGGCAGGGAACCCATGGTCGCAAGCAAATCGAgtaaaggcaag
aataaacgctGGTGCTGAATAGTTGTCCATTAGTTTGATTGAGATGGCAG
ATGTTGAGCAGCAGCATAGAACCAATAACCATACTTTGACTGTTGTACGT
TTGTGATGTGGATGATACGCTTGATATGGACCAGACAAGTCAATCTGTGT
ATGATAGAATGCTGGTGCTATCGTCAGGTTGTAGATGGAGACAGGGCCCA
TTGCCATATCAACTGTACGTTTCATGAGGTAACGACATCTTTCACAAGAT
TCACGTACTTGCTTCACCAGTTGTCTTCCTTCAATGATGTAGGCTTTCAT
CATGACAAAGCGATGTGTTGTCTCAATGCCAGAATGTTTTGCTGTGGGGT
GATTCCAATGAACATCCATGACGATTGATAGTGCGATTGGTGAATTTTTC
TCCAAGATGGGAACACAAAACAAAGTTTGACTCAAGTCTTTCATGGCATT
TGTGTATTTTCCGACAATCGTCACTTCTTGCTGTGGAAGGATCCGACCAG
TGTAGATGAGGATGCCATTCTTTTCCTTTGATATCTTCTGGTATTGGGGT
GGTTTGAGAAACTTCTTGACTTCCAGAGTACCTTTACGAAAAAAGTACTC
CTCTGCATCTGTTTCTTTGTGAGTTTTTGATTTCCATATCTTCATGCAGA
TGAATTTCAGGACAATGTTGAGGACACGGATCACTCTTTGAAAGCTGTGT
CTGTTTGGGTCGATGATGTATTTGGAAGATTGGTATCTCTTCTTGAGTTC
GGATAACCACTCAGATGTTGTTACGTGAACATCAAACTGGTTGATGGATA
GTTCTTTCCTGGCTTCGACTATCTCCTGATTGTccaattttatctcattt
gcACGTTTTGCTGGAAATTCAGAGATAGGTAGTTGCATCCAAGATTGACC
GTTTATCCATTGCGAGTGTTGATCAACGTCACTGATTGTTGCACCCTTTC
TGGTGCCAACATCAGCAATCATCTGTTTCGATCCAACATGGAGCCACTGA
TTCTTGTGCGTGAAACGATGAATCTCAATGACTCTGCTTCTAACCCATTG
TTTCAACATCTTTTGCTCGTTTGAAATCCAATGAAGAGATATCTGGCTAT
CTGTGAACTTTAAGGATGATTTGAAGAAGGATCGAAATGAGCGGCGAACA
ATCTCTCCTGTGTGAGCATTGATTAGTGATGCAAGTGGTTCTGCACGTGG
AAGAGTCAGATCCTTTGGAACCATCCTTGATTTGGCAAAAACCAATTGAG
AAGAGTATGATCCATCTTTACGAAGA Run BLAST on NCBI protein sequence of TCONS_00051003-protein >TCONS_00051003-protein ID=TCONS_00051003-protein|Name=TCONS_00051003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
LRKDGSYSSQLVFAKSRMVPKDLTLPRAEPLASLINAHTGEIVRRSFRSF
FKSSLKFTDSQISLHWISNEQKMLKQWVRSRVIEIHRFTHKNQWLHVGSK
QMIADVGTRKGATISDVDQHSQWINGQSWMQLPISEFPAKRANEIKLDNQ
EIVEARKELSINQFDVHVTTSEWLSELKKRYQSSKYIIDPNRHSFQRVIR
VLNIVLKFICMKIWKSKTHKETDAEEYFFRKGTLEVKKFLKPPQYQKISK
EKNGILIYTGRILPQQEVTIVGKYTNAMKDLSQTLFCVPILEKNSPIALS
IVMDVHWNHPTAKHSGIETTHRFVMMKAYIIEGRQLVKQVRESCERCRYL
MKRTVDMAMGPVSIYNLTIAPAFYHTQIDLSGPYQAYHPHHKRTTVKVWL
LVLCCCSTSAISIKLMDNYSAPAFILAFTRFACDHGFPAKLLCDEGTQLV
KGCKDMKL Run BLAST on NCBI transcript from alignment at scaffold_191:80755..82130 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051003 ID=TCONS_00051003|Name=TCONS_00051003|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at scaffold_191:80755..82130 (Clytia hemisphaerica)
TCTTCGTAAAGATGGATCATACTCTTCTCAATTGGTTTTTGCCAAATCAA
GGATGGTTCCAAAGGATCTGACTCTTCCACGTGCAGAACCACTTGCATCA
CTAATCAATGCTCACACAGGAGAGATTGTTCGCCGCTCATTTCGATCCTT
CTTCAAATCATCCTTAAAGTTCACAGATAGCCAGATATCTCTTCATTGGA
TTTCAAACGAGCAAAAGATGTTGAAACAATGGGTTAGAAGCAGAGTCATT
GAGATTCATCGTTTCACGCACAAGAATCAGTGGCTCCATGTTGGATCGAA
ACAGATGATTGCTGATGTTGGCACCAGAAAGGGTGCAACAATCAGTGACG
TTGATCAACACTCGCAATGGATAAACGGTCAATCTTGGATGCAACTACCT
ATCTCTGAATTTCCAGCAAAACGTgcaaatgagataaaattggACAATCA
GGAGATAGTCGAAGCCAGGAAAGAACTATCCATCAACCAGTTTGATGTTC
ACGTAACAACATCTGAGTGGTTATCCGAACTCAAGAAGAGATACCAATCT
TCCAAATACATCATCGACCCAAACAGACACAGCTTTCAAAGAGTGATCCG
TGTCCTCAACATTGTCCTGAAATTCATCTGCATGAAGATATGGAAATCAA
AAACTCACAAAGAAACAGATGCAGAGGAGTACTTTTTTCGTAAAGGTACT
CTGGAAGTCAAGAAGTTTCTCAAACCACCCCAATACCAGAAGATATCAAA
GGAAAAGAATGGCATCCTCATCTACACTGGTCGGATCCTTCCACAGCAAG
AAGTGACGATTGTCGGAAAATACACAAATGCCATGAAAGACTTGAGTCAA
ACTTTGTTTTGTGTTCCCATCTTGGAGAAAAATTCACCAATCGCACTATC
AATCGTCATGGATGTTCATTGGAATCACCCCACAGCAAAACATTCTGGCA
TTGAGACAACACATCGCTTTGTCATGATGAAAGCCTACATCATTGAAGGA
AGACAACTGGTGAAGCAAGTACGTGAATCTTGTGAAAGATGTCGTTACCT
CATGAAACGTACAGTTGATATGGCAATGGGCCCTGTCTCCATCTACAACC
TGACGATAGCACCAGCATTCTATCATACACAGATTGACTTGTCTGGTCCA
TATCAAGCGTATCATCCACATCACAAACGTACAACAGTCAAAGTATGGTT
ATTGGTTCTATGCTGCTGCTCAACATCTGCCATCTCAATCAAACTAATGG
ACAACTATTCAGCACCagcgtttattcttgcctttacTCGATTTGCTTGC
GACCATGGGTTCCCTGCCAAACTTCTTTGTGACGAGGGTACTCAACTAGT
CAAAGGATGTAAAGACATGAAACTGN Coding sequence (CDS) from alignment at scaffold_191:80755..82130 >TCONS_00051003 ID=TCONS_00051003|Name=TCONS_00051003|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_191:80755..82130 (Clytia hemisphaerica)
CTTCGTAAAGATGGATCATACTCTTCTCAATTGGTTTTTGCCAAATCAAG
GATGGTTCCAAAGGATCTGACTCTTCCACGTGCAGAACCACTTGCATCAC
TAATCAATGCTCACACAGGAGAGATTGTTCGCCGCTCATTTCGATCCTTC
TTCAAATCATCCTTAAAGTTCACAGATAGCCAGATATCTCTTCATTGGAT
TTCAAACGAGCAAAAGATGTTGAAACAATGGGTTAGAAGCAGAGTCATTG
AGATTCATCGTTTCACGCACAAGAATCAGTGGCTCCATGTTGGATCGAAA
CAGATGATTGCTGATGTTGGCACCAGAAAGGGTGCAACAATCAGTGACGT
TGATCAACACTCGCAATGGATAAACGGTCAATCTTGGATGCAACTACCTA
TCTCTGAATTTCCAGCAAAACGTgcaaatgagataaaattggACAATCAG
GAGATAGTCGAAGCCAGGAAAGAACTATCCATCAACCAGTTTGATGTTCA
CGTAACAACATCTGAGTGGTTATCCGAACTCAAGAAGAGATACCAATCTT
CCAAATACATCATCGACCCAAACAGACACAGCTTTCAAAGAGTGATCCGT
GTCCTCAACATTGTCCTGAAATTCATCTGCATGAAGATATGGAAATCAAA
AACTCACAAAGAAACAGATGCAGAGGAGTACTTTTTTCGTAAAGGTACTC
TGGAAGTCAAGAAGTTTCTCAAACCACCCCAATACCAGAAGATATCAAAG
GAAAAGAATGGCATCCTCATCTACACTGGTCGGATCCTTCCACAGCAAGA
AGTGACGATTGTCGGAAAATACACAAATGCCATGAAAGACTTGAGTCAAA
CTTTGTTTTGTGTTCCCATCTTGGAGAAAAATTCACCAATCGCACTATCA
ATCGTCATGGATGTTCATTGGAATCACCCCACAGCAAAACATTCTGGCAT
TGAGACAACACATCGCTTTGTCATGATGAAAGCCTACATCATTGAAGGAA
GACAACTGGTGAAGCAAGTACGTGAATCTTGTGAAAGATGTCGTTACCTC
ATGAAACGTACAGTTGATATGGCAATGGGCCCTGTCTCCATCTACAACCT
GACGATAGCACCAGCATTCTATCATACACAGATTGACTTGTCTGGTCCAT
ATCAAGCGTATCATCCACATCACAAACGTACAACAGTCAAAGTATGGTTA
TTGGTTCTATGCTGCTGCTCAACATCTGCCATCTCAATCAAACTAATGGA
CAACTATTCAGCACCagcgtttattcttgcctttacTCGATTTGCTTGCG
ACCATGGGTTCCCTGCCAAACTTCTTTGTGACGAGGGTACTCAACTAGTC
AAAGGATGTAAAGACATGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051003-exon-scaffold_191-1491911889:80755..82130 | TCONS_00051003-exon-scaffold_191-1491911889:80755..82130 | Clytia hemisphaerica | exon |
| TCONS_00051003-exon-scaffold_191-1510915933:80755..82130 | TCONS_00051003-exon-scaffold_191-1510915933:80755..82130 | Clytia hemisphaerica | exon |
| TCONS_00051003-exon-scaffold_191-1575043694:80755..82130 | TCONS_00051003-exon-scaffold_191-1575043694:80755..82130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_191 | supercontig | scaffold_191:80755..82130 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
