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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051008 ID=TCONS_00051008|Name=TCONS_00051008|organism=Clytia hemisphaerica|type=transcript|length=3101bpRun BLAST on NCBI protein sequence of TCONS_00051008-protein >TCONS_00051008-protein ID=TCONS_00051008-protein|Name=TCONS_00051008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=708bp MTDRLSNETVTVFVNHVDCYSSGIIGKVLAQAKVGATSVDEDDNLSQGSNRun BLAST on NCBI transcript from alignment at scaffold_192:54782..73740+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051008 ID=TCONS_00051008|Name=TCONS_00051008|organism=Clytia hemisphaerica|type=transcript|length=18959bp|location=Sequence derived from alignment at scaffold_192:54782..73740+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_192:54782..73740+ >TCONS_00051008 ID=TCONS_00051008|Name=TCONS_00051008|organism=Clytia hemisphaerica|type=CDS|length=40413bp|location=Sequence derived from alignment at scaffold_192:54782..73740+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051008 vs. Swiss-Prot (Human)
Match: KAD7 (Adenylate kinase 7 OS=Homo sapiens GN=AK7 PE=1 SV=3) HSP 1 Score: 644.04 bits (1660), Expect = 0.000e+0 Identity = 342/706 (48.44%), Postives = 487/706 (68.98%), Query Frame = 2
Query: 260 TVTVFVNHVDCYSSGIIGKVLAQAKVGATSVDEDDNLSQGSNQDQAL-------TKDQCYQVIGTLKYNTSEKPDWVNSIIQYNNNEDLLPALMQCDFIIYDIVSDPAQVEEAIWAVSALNAEMESFETQKIFICVSTVLTWAKSKPLDPDDPEMPFTEEDYRKRKAHPNFKDHLSCEKLVIKLGKTNKTKLMTYVIASGVAYGEGEKIFHFLFKGAWLGAEQHLKIFGNGQNILPAIHVKDLASVVLNICDAKPKVRYVLAVDDSKSTLEDMVRAISKNLGNGKTKFVSREDALIEKEIEQADFDMLLVNLRMDPTFIKESMTINWVSDVGFVENMPKIIKEFKENRNLLPIRACILGPPASGKTTVAKQLCEHYKLHHIKIQDVIDEAIATLKTNAA-----RAXXXXXXXXXXMRAQENQKVLDDINECKEKNNGRLEDSFIIKFFTEKLKSMPCQNQGFILDGFPKTMEQAKLLFSLGXXXXXXXXXXXXXXXXXTLMPEYLISLNTSDDFLRNRVMNLPETAVTGTHNTEEGLHRRLTDFRNTNTEDETVLNYFDELEIHPENLDITQDHTPLMRQTVERIIKIMGKERNYGPTPDELAELERLGIQRAFDERRRVQDELEKQEAEEARDRARKLEEWRTQLNSVKQQEKEMLEAQSIPFRNYLMKNVMPTLTEGLIECCKVRPEDPVDFLAEFLFEKNPQ 2341
T VF+N +D YSSG IGK L+ VGA+ + + + A+ K+ +Q++GTL S +PD+ + EDLL L++CD IIY+I Q+EEAIWAVSAL+ E+ FE +K+FI +STV+TWA+SK LDP+D E+PFTEEDYR+RK+HPNF DH++ EK+V+K GK + K YV+A+G+ YG + H FK AWLG L +FG+G N++P IHV DLA V+ N+ D PK Y++AVD+S TLED+V+ ISKN G GK + + RE+A + K++ Q D LLVNLRM+ F+KE+ I W + GFVEN+ I+KE+K++R L+PI+ CILGPPA GK+++AK+L +YKLHHI+++DVI EAIA L+ A +EE+E+E+++ ++ Q++LD I E E+N G+L+D +II+F EKLKSMPC+NQG+ILDGFPKT +QAK LF+ ++E+E + R + F +D+ ++PE++ +L+ SD+FL+ RV+NLPE+ V GTH +++ R L+++R+ N +DETV NYFDELEIHP ++D+ + R ++++IK +G+ RNYG T +E AE ER + + E E QEA E ++ + EEW +L VK++E+E+LEAQSIP RNYLM VMPTL +GL ECC VRPEDPVDFLAE+LF+ NP+
Sbjct: 17 TQRVFINLLDSYSSGNIGKFLSNCVVGASLEEITEEEEEEDENKSAMLEASSTKVKEGTFQIVGTLSKPDSPRPDFAVETYSAISREDLLMRLLECDVIIYNITESSQQMEEAIWAVSALSEEVSHFEKRKLFILLSTVMTWARSKALDPEDSEVPFTEEDYRRRKSHPNFLDHINAEKMVLKFGKKAR-KFAAYVVAAGLQYGAEGGMLHTFFKMAWLGEIPALPVFGDGTNVIPTIHVLDLAGVIQNVIDHVPKPHYLVAVDESVHTLEDIVKCISKNTGPGKIQKIPRENAYLTKDLTQDCLDHLLVNLRMEALFVKENFNIRWAAQTGFVENINTILKEYKQSRGLMPIKICILGPPAVGKSSIAKELANYYKLHHIQLKDVISEAIAKLEAIVAPNDVGEGEEEVEEEEEEENVEDAQELLDGIKESMEQNAGQLDDQYIIRFMKEKLKSMPCRNQGYILDGFPKTYDQAKDLFNQEDEEEEDDVRGRMFPFDKLIIPEFVCALDASDEFLKERVINLPESIVAGTHYSQDRFLRALSNYRDINIDDETVFNYFDELEIHPIHIDVGKLEDAQNRLAIKQLIKEIGEPRNYGLTDEEKAEEERKAAEERLAREAAEEAEREHQEAVEMAEKIARWEEWNKRLEEVKREERELLEAQSIPLRNYLMTYVMPTLIQGLNECCNVRPEDPVDFLAEYLFKNNPE 721 The following BLAST results are available for this feature:
BLAST of TCONS_00051008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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