|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051010 ID=TCONS_00051010|Name=TCONS_00051010|organism=Clytia hemisphaerica|type=transcript|length=1934bp
TGGAAGAAAGCAAGGTATTTAACAAATAAGATTTCCAAGGCATAAAAACT
GTGTTTATAAAATGAATctcaaaagaattaaaatgtaaacaaaaatgcTC
TGCATAAATAGTAGTAAGTGATACTATGAATAGAAATATcgtttaaaata
aaagaaaaatttaactaaaaatcgtaaaatttcatgtttttcaacATGGT
GCCAGTCTCATGCTACCAATTCATGAATTTTAATAAATCTAGACCGATTT
TAGACGATTACCAATACTTAATTCCAAAAAATAAAGCATGGCATTAGGTA
CGATTGACTATTTTAAAAATAGGACCAGACGAAACTCGATAAAGATTACA
TTGTGGTAATGTAccaataaaatcaaacaaacaaaaaagtccggagaaaa
aaaactttatacaaGTTATATCACCTCAAAAAACCCCTTTTTTAAATGCT
AACAATCTAAATAAACTTTGATACAATCTGTTTTAAAATAAATGATTTCA
AACTCTGTCAcgaagattttacaaaaaataatacaaaattTCTATATAAT
ATGAATGAAGTCACAAAAATATACActatttaaatttgaaaaggttGAGA
ATGGAAATTATTGTCATTCTAATAtctcaaaagttgaaaattagAGTTGC
CTAGTCCTGCTGACTATGAAACTAATGGCACTACTTTAACCCCACTTTAT
CGAAAACACTGTAACGTCTAATGCCGACATCCCACATCTAATTTCGTCAC
CCTTATCACTATTGATTGATTCTCCgtctttttttgttatttctaTCTCG
ATTCGATTGCgaatgttgacattagaccaagttacggtttTCCCCCAATA
GCTGGCAAGATTTATATTGCTGAACAAACTAACATGGCTCAtgtctttaa
aatgaaaaagaatttctaaagaatcttcatttttagtttcAGAAATTTAT
GAGATGTCAATGTCACAGCGTTTATCAATAATTTGTGTGATTGCATTATG
AATAATActgtaaatatacaaaaatacaaagacaTCATACAATAGATAAA
CCATCAACAAAACCTGTAAAATGTTTCAGATGATTAAGTATTTAGCAATG
AAGGCCGTTAGGATGTTTAGTTAGGATTAATTCAGCCAGAACATTGAAAA
GCTATACAGATCCAAAAACTAGCTAAAacaatccaaagaaaaaatatacg
ACAAAATCACTGCAATGAAAGGAATATCCTTGAAATCATTCACCATACTA
GATTTCAAAATAAGGATGGTGCAGGATGGTGATTCATTGTTAAATCACTA
GCAATCAGTaagacaaaaaatgtttttgaaagaagaaataaagTATAATT
AGGTCAAAAGATTTGCACACGAATTATGAGAATTTCTTTGCATTCAAATA
TCCTGCTTTTTGCagacgagtctgctaaattgcgtgggttgcgtgggtgc
gtgggtgcgtgggtcaatatttttgcgtgggtcatttttttgcgtgggtg
cgtgggtcaatatttttgcgtgggtcatttttttgcgtgggtgcgtgggt
caaaatattttttgcgtgggtcaaattttttgcgtgggtcatattttttg
cgtgggtcaaattttttgcgtgggtcatattttttgcgtgggtcatattt
tttgcgtgggtcattattttttgcgtgggtcattattttttgcgtgggtc
attattttttgcgtgggtcattattttttgcgtgggtcattattttttgc
gtgggtcattattttttgcatgggtcaaaatttttgcgtgggtcaaaatt
ctatctgtaattcgaaaaaaagaaaattcgagctggtcacatccaaaatg
ttggatgtgttttacataacacgttttggtttattttgtttattttgcat
agcTGTACAGTTCCGTACTTTCTGAATATGGTGA Run BLAST on NCBI transcript from alignment at scaffold_192:87426..89359+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051010 ID=TCONS_00051010|Name=TCONS_00051010|organism=Clytia hemisphaerica|type=transcript|length=1934bp|location=Sequence derived from alignment at scaffold_192:87426..89359+ (Clytia hemisphaerica)
TGGAAGAAAGCAAGGTATTTAACAAATAAGATTTCCAAGGCATAAAAACT
GTGTTTATAAAATGAATctcaaaagaattaaaatgtaaacaaaaatgcTC
TGCATAAATAGTAGTAAGTGATACTATGAATAGAAATATcgtttaaaata
aaagaaaaatttaactaaaaatcgtaaaatttcatgtttttcaacATGGT
GCCAGTCTCATGCTACCAATTCATGAATTTTAATAAATCTAGACCGATTT
TAGACGATTACCAATACTTAATTCCAAAAAATAAAGCATGGCATTAGGTA
CGATTGACTATTTTAAAAATAGGACCAGACGAAACTCGATAAAGATTACA
TTGTGGTAATGTAccaataaaatcaaacaaacaaaaaagtccggagaaaa
aaaactttatacaaGTTATATCACCTCAAAAAACCCCTTTTTTAAATGCT
AACAATCTAAATAAACTTTGATACAATCTGTTTTAAAATAAATGATTTCA
AACTCTGTCAcgaagattttacaaaaaataatacaaaattTCTATATAAT
ATGAATGAAGTCACAAAAATATACActatttaaatttgaaaaggttGAGA
ATGGAAATTATTGTCATTCTAATAtctcaaaagttgaaaattagAGTTGC
CTAGTCCTGCTGACTATGAAACTAATGGCACTACTTTAACCCCACTTTAT
CGAAAACACTGTAACGTCTAATGCCGACATCCCACATCTAATTTCGTCAC
CCTTATCACTATTGATTGATTCTCCgtctttttttgttatttctaTCTCG
ATTCGATTGCgaatgttgacattagaccaagttacggtttTCCCCCAATA
GCTGGCAAGATTTATATTGCTGAACAAACTAACATGGCTCAtgtctttaa
aatgaaaaagaatttctaaagaatcttcatttttagtttcAGAAATTTAT
GAGATGTCAATGTCACAGCGTTTATCAATAATTTGTGTGATTGCATTATG
AATAATActgtaaatatacaaaaatacaaagacaTCATACAATAGATAAA
CCATCAACAAAACCTGTAAAATGTTTCAGATGATTAAGTATTTAGCAATG
AAGGCCGTTAGGATGTTTAGTTAGGATTAATTCAGCCAGAACATTGAAAA
GCTATACAGATCCAAAAACTAGCTAAAacaatccaaagaaaaaatatacg
ACAAAATCACTGCAATGAAAGGAATATCCTTGAAATCATTCACCATACTA
GATTTCAAAATAAGGATGGTGCAGGATGGTGATTCATTGTTAAATCACTA
GCAATCAGTaagacaaaaaatgtttttgaaagaagaaataaagTATAATT
AGGTCAAAAGATTTGCACACGAATTATGAGAATTTCTTTGCATTCAAATA
TCCTGCTTTTTGCagacgagtctgctaaattgcgtgggttgcgtgggtgc
gtgggtgcgtgggtcaatatttttgcgtgggtcatttttttgcgtgggtg
cgtgggtcaatatttttgcgtgggtcatttttttgcgtgggtgcgtgggt
caaaatattttttgcgtgggtcaaattttttgcgtgggtcatattttttg
cgtgggtcaaattttttgcgtgggtcatattttttgcgtgggtcatattt
tttgcgtgggtcattattttttgcgtgggtcattattttttgcgtgggtc
attattttttgcgtgggtcattattttttgcgtgggtcattattttttgc
gtgggtcattattttttgcatgggtcaaaatttttgcgtgggtcaaaatt
ctatctgtaattcgaaaaaaagaaaattcgagctggtcacatccaaaatg
ttggatgtgttttacataacacgttttggtttattttgtttattttgcat
agcTGTACAGTTCCGTACTTTCTGAATATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051010-exon-scaffold_192-1491911889:87426..89359 | TCONS_00051010-exon-scaffold_192-1491911889:87426..89359 | Clytia hemisphaerica | exon |
| TCONS_00051010-exon-scaffold_192-1510915933:87426..89359 | TCONS_00051010-exon-scaffold_192-1510915933:87426..89359 | Clytia hemisphaerica | exon |
| TCONS_00051010-exon-scaffold_192-1575043694:87426..89359 | TCONS_00051010-exon-scaffold_192-1575043694:87426..89359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_192 | supercontig | scaffold_192:87426..89359 + |
Blast
The following BLAST results are available for this feature:
|
