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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051011 ID=TCONS_00051011|Name=TCONS_00051011|organism=Clytia hemisphaerica|type=transcript|length=2007bp
TATTTAACAAATAAGATTTCCAAGGCATAAAAACTGTGTTTATAAAATGA
ATctcaaaagaattaaaatgtaaacaaaaatgcTCTGCATAAATAGTAGT
AAGTGATACTATGAATAGAAATATcgtttaaaataaaagaaaaatttaac
taaaaatcgtaaaatttcatgtttttcaacATGGTGCCAGTCTCATGCTA
CCAATTCATGAATTTTAATAAATCTAGACCGATTTTAGACGATTACCAAT
ACTTAATTCCAAAAAATAAAGCATGGCATTAGGTACGATTGACTATTTTA
AAAATAGGACCAGACGAAACTCGATAAAGATTACATTGTGGTAATGTAcc
aataaaatcaaacaaacaaaaaagtccggagaaaaaaaactttatacaaG
TTATATCACCTCAAAAAACCCCTTTTTTAAATGCTAACAATCTAAATAAA
CTTTGATACAATCTGTTTTAAAATAAATGATTTCAAACTCTGTCAcgaag
attttacaaaaaataatacaaaattTCTATATAATATGAATGAAGTCACA
AAAATATACActatttaaatttgaaaaggttGAGAATGGAAATTATTGTC
ATTCTAATAtctcaaaagttgaaaattagAGTTGCCTAGTCCTGCTGACT
ATGAAACTAATGGCACTACTTTAACCCCACTTTATCGAAAACACTGTAAC
GTCTAATGCCGACATCCCACATCTAATTTCGTCACCCTTATCACTATTGA
TTGATTCTCCgtctttttttgttatttctaTCTCGATTCGATTGCgaatg
ttgacattagaccaagttacggtttTCCCCCAATAGCTGGCAAGATTTAT
ATTGCTGAACAAACTAACATGGCTCAtgtctttaaaatgaaaaagaattt
ctaaagaatcttcatttttagtttcAGAAATTTATGAGATGTCAATGTCA
CAGCGTTTATCAATAATTTGTGTGATTGCATTATGAATAATActgtaaat
atacaaaaatacaaagacaTCATACAATAGATAAACCATCAACAAAACCT
GTAAAATGTTTCAGATGATTAAGTATTTAGCAATGAAGGCCGTTAGGATG
TTTAGTTAGGATTAATTCAGCCAGAACATTGAAAAGCTATACAGATCCAA
AAACTAGCTAAAacaatccaaagaaaaaatatacgACAAAATCACTGCAA
TGAAAGGAATATCCTTGAAATCATTCACCATACTAGATTTCAAAATAAGG
ATGGTGCAGGATGGTGATTCATTGTTAAATCACTAGCAATCAGTaagaca
aaaaatgtttttgaaagaagaaataaagTATAATTAGGTCAAAAGATTTG
CACACGAATTATGAGAATTTCTTTGCATTCAAATATCCTactctttgCAG
ACATGCTGTATGTTCACATTCTGTCTAAAGCCAAAATTGCATTTTGAATA
CGCACAACATCAGtagttcaaaatgaaaatgtagTATCGATCAATATGGT
GAAATCAACATCTTGACGATTGCAAACAAAAGTAATCAAGTGCCGGTTAT
GAATGAATTCTCAGAAAATGTTTTCACTACACCACAcaccatacaaaaaa
tcaacaatAATTGATCAGAAACTTGTAACTCATGGAAACCAGTGGTTTGA
TCATATGTTATGGTAAATGACAATGAAACAAACAAGTAATAATCTATCAG
AAACTTGTTAACTCATTGAACTCAGCGGTTTGATCATTGGTTAGGTAAAT
GGCAATGAAACAAGCCAGCATTTATCTATCAGAAACCTGTAACTCATGGA
AACCGGTGGATTGATCATAAGTTCTGGTAAATGACAATGAACTACAATCT
CCTATCACTACCTCAGCTGTGGTGTCAACAACCAACTCCAGCAGGTGGCC
ACCCATCATTTTACCGCTATAATCTGCTAGTCCAACATGAAGGTGACCAC
CCCCTGATAATGTCCCATCTAATGAAACAATTTCCATCGGATTGATCAAA
TCTAGCA Run BLAST on NCBI transcript from alignment at scaffold_192:87441..91200+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051011 ID=TCONS_00051011|Name=TCONS_00051011|organism=Clytia hemisphaerica|type=transcript|length=3760bp|location=Sequence derived from alignment at scaffold_192:87441..91200+ (Clytia hemisphaerica)
TATTTAACAAATAAGATTTCCAAGGCATAAAAACTGTGTTTATAAAATGA
ATctcaaaagaattaaaatgtaaacaaaaatgcTCTGCATAAATAGTAGT
AAGTGATACTATGAATAGAAATATcgtttaaaataaaagaaaaatttaac
taaaaatcgtaaaatttcatgtttttcaacATGGTGCCAGTCTCATGCTA
CCAATTCATGAATTTTAATAAATCTAGACCGATTTTAGACGATTACCAAT
ACTTAATTCCAAAAAATAAAGCATGGCATTAGGTACGATTGACTATTTTA
AAAATAGGACCAGACGAAACTCGATAAAGATTACATTGTGGTAATGTAcc
aataaaatcaaacaaacaaaaaagtccggagaaaaaaaactttatacaaG
TTATATCACCTCAAAAAACCCCTTTTTTAAATGCTAACAATCTAAATAAA
CTTTGATACAATCTGTTTTAAAATAAATGATTTCAAACTCTGTCAcgaag
attttacaaaaaataatacaaaattTCTATATAATATGAATGAAGTCACA
AAAATATACActatttaaatttgaaaaggttGAGAATGGAAATTATTGTC
ATTCTAATAtctcaaaagttgaaaattagAGTTGCCTAGTCCTGCTGACT
ATGAAACTAATGGCACTACTTTAACCCCACTTTATCGAAAACACTGTAAC
GTCTAATGCCGACATCCCACATCTAATTTCGTCACCCTTATCACTATTGA
TTGATTCTCCgtctttttttgttatttctaTCTCGATTCGATTGCgaatg
ttgacattagaccaagttacggtttTCCCCCAATAGCTGGCAAGATTTAT
ATTGCTGAACAAACTAACATGGCTCAtgtctttaaaatgaaaaagaattt
ctaaagaatcttcatttttagtttcAGAAATTTATGAGATGTCAATGTCA
CAGCGTTTATCAATAATTTGTGTGATTGCATTATGAATAATActgtaaat
atacaaaaatacaaagacaTCATACAATAGATAAACCATCAACAAAACCT
GTAAAATGTTTCAGATGATTAAGTATTTAGCAATGAAGGCCGTTAGGATG
TTTAGTTAGGATTAATTCAGCCAGAACATTGAAAAGCTATACAGATCCAA
AAACTAGCTAAAacaatccaaagaaaaaatatacgACAAAATCACTGCAA
TGAAAGGAATATCCTTGAAATCATTCACCATACTAGATTTCAAAATAAGG
ATGGTGCAGGATGGTGATTCATTGTTAAATCACTAGCAATCAGTaagaca
aaaaatgtttttgaaagaagaaataaagTATAATTAGGTCAAAAGATTTG
CACACGAATTATGAGAATTTCTTTGCATTCAAATATCCTGCTTTTTGCag
acgagtctgctaaattgcgtgggttgcgtgggtgcgtgggtgcgtgggtc
aatatttttgcgtgggtcatttttttgcgtgggtgcgtgggtcaatattt
ttgcgtgggtcatttttttgcgtgggtgcgtgggtcaaaatattttttgc
gtgggtcaaattttttgcgtgggtcatattttttgcgtgggtcaaatttt
ttgcgtgggtcatattttttgcgtgggtcatattttttgcgtgggtcatt
attttttgcgtgggtcattattttttgcgtgggtcattattttttgcgtg
ggtcattattttttgcgtgggtcattattttttgcgtgggtcattatttt
ttgcatgggtcaaaatttttgcgtgggtcaaaattctatctgtaattcga
aaaaaagaaaattcgagctggtcacatccaaaatgttggatgtgttttac
ataacacgttttggtttattttgtttattttgcatagcTGTACAGTTCCG
TACTTTCTGAATATGGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATGTTTCCAACAGGG
GAGTGTCTTTTTATAAGTGGAATTTTCCCTTTTGGGAGATTTCGTCCAAA
ATTAATACTGTAGTTACGTTTTGTATATACCTAAGAATATGGCCAAAAAA
ATGTACACAGTCAAGcggctttatattttttaattccgCTGACTGAACAT
GTCAGCTTTTATAGCTTCTTATAGCACGCTTTAATCTTTTGGGTTTTCTT
TGAGTGTTAAAGAACAAAGCAAATTgcgacaaaatctgaaaatttttcta
caaaagttatattcattaggcgaccgattactaaacaatttaattgttgt
caattatttcgtccaccccacttgtaatttctttgatttaagtacattaa
aggccaatttaaaaaattggacgaAATAAAGATGCTgtactttttattat
tttattatatcTCGTTTTTTTTGCTTAGAGTTATAGGGTTTATTTCCATG
ACACTGGAATCCTGAAATATAGcatgctaaaattcaaaagtgtgatCCTG
AAGTGTGTCTACAAAAATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACAAAAATTA
GACGGGTGTGTGTTGATTCTGTATAATATTATAGTAAATAAGTGCAGCTA
TGCAAAATAAACCACAACGCGTTACATAAAAACAGtgtgcttttgtttag
ttttcatAGATACACAATacatttttgtataagataacttgaaagtttta
atttggtaaaaaaatcgagttagctaaaaaatgaccaaaaaaatagtgac
ccacgcaaaaactttgacccacgcaaaaaatttgacccacgcaaaatttt
tgacccacgcaaaaaataatgacccccgcaaaaaatatgacccacgcaaa
aaatttgacccacgcaaaatttttgacccacgcaaaaaatattttgaccc
acgcacccacgcaaaaaaatgacccacgcaagaatattgacccacgcaaa
aatattgacccacgcacccacgcaacccacgcaatttagcagactctttg
CAGACATGCTGTATGTTCACATTCTGTCTAAAGCCAAAATTGCATTTTGA
ATACGCACAACATCAGtagttcaaaatgaaaatgtagTATCGATCAATAT
GGTGAAATCAACATCTTGACGATTGCAAACAAAAGTAATCAAGTGCCGGT
TATGAATGAATTCTCAGAAAATGTTTTCACTACACCACAcaccatacaaa
aaatcaacaatAATTGATCAGAAACTTGTAACTCATGGAAACCAGTGGTT
TGATCATATGTTATGGTAAATGACAATGAAACAAACAAGTAATAATCTAT
CAGAAACTTGTTAACTCATTGAACTCAGCGGTTTGATCATTGGTTAGGTA
AATGGCAATGAAACAAGCCAGCATTTATCTATCAGAAACCTGTAACTCAT
GGAAACCGGTGGATTGATCATAAGTTCTGGTAAATGACAATGAACTACAA
TCTCCTATCACTACCTCAGCTGTGGTGTCAACAACCAACTCCAGCAGGTG
GCCACCCATCATTTTACCGCTATAATCTGCTAGTCCAACATGAAGGTGAC
CACCCCCTGATAATGTCCCATCTAATGAAACAATTTCCATCGGATTGATC
AAATCTAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051011-exon-scaffold_192-1491911889:87441..88829 | TCONS_00051011-exon-scaffold_192-1491911889:87441..88829 | Clytia hemisphaerica | exon |
| TCONS_00051011-exon-scaffold_192-1510915933:87441..88829 | TCONS_00051011-exon-scaffold_192-1510915933:87441..88829 | Clytia hemisphaerica | exon |
| TCONS_00051011-exon-scaffold_192-1575043694:87441..88829 | TCONS_00051011-exon-scaffold_192-1575043694:87441..88829 | Clytia hemisphaerica | exon |
| TCONS_00051011-exon-scaffold_192-1491911889:90583..91200 | TCONS_00051011-exon-scaffold_192-1491911889:90583..91200 | Clytia hemisphaerica | exon |
| TCONS_00051011-exon-scaffold_192-1510915933:90583..91200 | TCONS_00051011-exon-scaffold_192-1510915933:90583..91200 | Clytia hemisphaerica | exon |
| TCONS_00051011-exon-scaffold_192-1575043694:90583..91200 | TCONS_00051011-exon-scaffold_192-1575043694:90583..91200 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_192 | supercontig | scaffold_192:87441..91200 + |
Blast
The following BLAST results are available for this feature:
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