TCONS_00051012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051012
Unique NameTCONS_00051012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051012 ID=TCONS_00051012|Name=TCONS_00051012|organism=Clytia hemisphaerica|type=transcript|length=1489bp
ACATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAAT
TGAAAACGAAACAGAAAAGTCACATTTGAAAATGGCATCTACTGAACCAC
TTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTA
TATAGCATCGGTAATGGAGATGTCTTTGGTAAATCTCAGCCAATTACCTT
ACTCTTATTGGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAA
TGGAATTACAAGATTGCTCTCTTCCCTTACTTCATGAAGTCGTTGGAACT
GCTGATCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGG
TGCTATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTA
ATGCTAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAG
AAGACGGTCAAGattttggTTGTAGGAAACCCAGCAAACACTAACTGTCT
GATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGTC
TCACAAAATTAGATCAAAACAGAGCTATTTCACAGGTTGCAATGAGACTC
GGTATCAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTC
ATCCACACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTC
AAGCAGTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGA
GAATTCTTAAGGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAG
AAAATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGC
GCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTT
ATCACTGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTT
CCCACTGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAG
AAATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTA
GTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAA
AAATGGTAATATGTATAGTTCGGTGGACTTTGTAGTAAacttctttttag
aaaaaatgaaatctttGTCTGCgtaaatttttttgtatttagaATTCTTA
ATGTTGCTCGTTTTTAATACAAATTGACGGTTGTAAAATGCATGCTAAGT
TTATGAGATGTACAATGAATATTAAAGTACTAATAACATAATATCTTCTA
ATCAAGTTTTGATGGTTAGGTGGTATTACTTACTAACACTGTTTAAATTT
CGTTTactataaaatttgaattttatttatcTAACGTTATGCATTTTACA
CCATTGGAATCTTTTTAGTTTTGTAAagtctttatttttaaaatacctct
GATTAAAAAAATGTGCATAAATAAAATGCTGATACAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_192:45588..53238-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051012 ID=TCONS_00051012|Name=TCONS_00051012|organism=Clytia hemisphaerica|type=transcript|length=7651bp|location=Sequence derived from alignment at scaffold_192:45588..53238- (Clytia hemisphaerica)
ACATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAAT
TGAAAACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTAT
TTTCGTTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACC
CACGATATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCC
AACAGCAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTT
TGGGTCACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACG
TCTCAACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCAT
ATAAACACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACT
ACTAACTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCA
AGGGGTTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTT
TGCACCTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGG
TATTGACGAACTTTTCCAGGGGGGTCTGAGCCTTGATTTTCCAGGGGGTT
CTCTCCTCCTAAACTGGCATCAATAGACCTTTTCGCCTTTCCGTCCGCCA
TCTTGAATTGTATGCAAAAATACAGGAACAAAAATGTCGTGGTTGGATTT
AGTTGAAATGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGA
CAACAAAGCATCTTATAAATAAATATTATAATCATTANGGCCGATGGCTT
TTTCCTTTTTCACAAAATTTCACTTTCCATCCAGGCGTGTCGACCTAATT
TTCCAGGGGATAGTTTGTTATCCAAAATTTCCAGGGGGGTTAGTGAAAAA
AGTTTGTCAATACCCCCTGTATAATTTTTTTTTGGAATAGCCCAATATTG
TATTTGAATTTTCTGGATTTTTCAATTTTTGGTTTAAATTTTTTTAAACA
ATCAGCACTCAGGAAGGTCAAAGTTTGCCAGAGGACATGGTCCATCAGAT
GACATAGGTGTGTCGCCCTATTTGGTCAGAAAAATAAAAAATAAATATAA
AAACTCTTTAAAAAAGTTATTTTTAACTTCCTACGAATTTCCATTTTATT
TATTACAAATTTGGCTTCGAAAACACTATTTGATATTCCCTGGAGCAGCA
CAAACTTGTTGAACTGAATTGGGTTATAAAACTGATCAAACACTCACGAT
TTTTTACAAAATTTCAATTATTGATTTATTACTGTGAGATCGGGTAACTT
GCATCAGTGGAGGCTAACATGCATTGCCATCAAATGAGTGACCAATCAAA
GCAGCAAAATTTCAAAACAAATGAACTACACAGCTCCGCTCGCAATCTAC
TCTACCATTTTTGTTTTGATTTAACTTTGTATTTTATTAAGTCATTCATT
TGAGGGCTATGCATGTTTGCCTCCAATGATGCAAGTTACCCGATCTCACG
GTAAATGTCAAGAGTTGGGTCAAGCTTGATTTAAAGATTAGTTCAATAAG
TTTGATTGATCGTGACTTCACTTTTTTTATAGGCAAAAGCTTGTTAATCC
TCGTTAATCCTGGGTCAGAGCAGGATTAATATTTGGCCAATTTAATCAGA
ATTTAATCCAGATTTAAGCCTATTTTTTTTCGAACAACTGACGATTCTGC
ATTAATCGGCGCTAACAGGCGCTAATCGAGATTTAATCGAAAATTAAGCT
AATCGGCCGCTAATCCACTTTTGAACAACCGTGCCCTTGACAATAAAAAT
TGAGTTTTGAATTCTTTTATATTTCAGGCATCTACTGAACCACTTAGAGT
TTGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAGCA
TCGGTAATGGAGATGTCTTTGGTAAATCTCAGGTTGGTCTTATTGATTAT
TTTGTTATAATAGAAAGTTTTAACATTTTAAATTGATGTTGATACTTCAT
ATCAATCAAATAATCCTGTTCTAAGCAATGATCAGTCTACATCATTCTCC
ATACCCTCAAGAGAGTCAAAAAATATTGTGTCTGATATTTCCCTGTTCTC
TTTTTATTCTAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGAT
GCCAGTCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCT
TACTTCATGGTAAGTTCAGCCATCGTTATCATCAAAAATTAAGAATTGTT
TTTATTTATTTACTAAACAGTTGGTTGACAAGTCTTTGGCATTCGATTTT
TTTTGTGAAATGGTTTGGTTTTTAATCTCTCTTCTCCTAATTAGAATTCT
TCAATTTTACTAAAATAACAAGAGAATTTTGAAGGAGAGTTTTTGGTATT
TATCGTAATCTGTTTAATGTTTATTATTTGTAGAAGTCGTTGGAACTGCT
GATCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGC
TATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATG
CTAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAG
ACGGTCAAGGTACATTTTTCTTTACTTCCTCTTCCCATGATAAATGTAAA
CAACATTGTGACAAATTGCACTTCTTGTTTGTTGGCCACAATATCCTTCC
TCTATTCTTGAACAACAAGATTCGAACTCCTCCCTAGTAATGCCCCTCTT
CAGCCCCTCTCAATCCCCGATCAAATTTCAATATTTTCTTAACTTTTTTT
AATGGATATGTTGTAAAAGATTTTTTAGAATGTAACCGTCAATTCTTTTC
ATTTCATTTAAAAAATATTTTACCTGTAAGTTAATTAATTTAATGTTTCT
TACTTTTTCTTTAGATTTTGGTTGTAGGAAACCCAGCAAACACTAACTGT
CTGATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATG
TCTCACAAAATTAGATCAAAACAGAGCTATTTCACAGGTAATTTCGTTAT
CTGGGTTCAAGATTTAGAAGATTATGAAATTTTATTAAAAGCATAATACG
TTAGACAGTTTTTGGGCCGTTCAAAACTTGCTTTATTAAATTTGTTTTGT
TACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAATG
TCTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAACAA
TGTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCA
GCAAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTT
CAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGC
TGTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAAGC
TGTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAATAG
CGAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGTTG
ACATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACACC
AAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAACAT
CAACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGATA
TCCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCTCC
ACAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTGAT
ATGAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATATGA
CACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAACG
CGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGC
TGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCG
AAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGA
ATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCA
CAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAA
AGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTA
GCGTTCTTGAAAAAGGAATGAGTTAAANACTTGCTTTATTAAATTTGTTT
TGTTACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAA
ATGTCTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAA
CAATGTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACG
TCAGCAAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGAT
GTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGA
GGCTGTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATA
AGCTGTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAA
TAGCGAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAG
TTGACATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAAC
ACCAAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAA
CATCAACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCG
ATATCCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTC
TCCACAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGT
GATATGAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATA
TGACACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAA
ACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTC
CGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCG
CCGAAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTAC
GGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGG
CCACAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGC
AAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCG
TTAGCGTTCTTGAAAAAGGAATGAGTTAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATCGTTT
AATCATATTTCTTTTATTGAATTTAAAATAGAAAAACATCTTTTGAATGA
ACACCTGGCTTTCAAAAGAGAAGAAAGGAAATCTATCAACCTGTTATAAG
GCATTTCTCCTTATCGCTCCTTTTATTTACTTGATTTTTTTCTCTCGCGC
CAGATTTAATTCGAGACCCGTGTATTAAAGTGTGATATGAAATCCGATCC
TCAAATCACATCTTTAAAAAGACATATTTCATATGACACATTTAATAATC
CTGCATAACTTCCTGTTTTTATAGACTGTTCAAACGCGTGGTGCGGCCAT
CATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTT
GTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATG
AGCATGGGTGTTATCACTGACGGCACACATTACGGAATCCCTGAAGATAT
CGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATACACAATCG
TCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCA
GCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAA
GGAATGAGTTAAAAATGGTAATATGTATAGTTCGGTGGACTTTGTAGTAA
ACTTCTTTTTAGAAAAAATGAAATCTTTGTCTGCGTAAATTTTTTTGTAT
TTAGAATTCTTAATGTTGCTCGTTTTTAATACAAATTGACGGTTGTAAAA
TGCATGCTAAGTTTATGAGATGTACAATGAATATTAAAGTACTAATAACA
TAATATCTTCTAATCAAGTTTTGATGGTTAGGTGGTATTACTTACTAACA
CTGTTTAAATTTCGTTTACTATAAAATTTGAATTTTATTTATCTAACGTT
ATGCATTTTACACCATTGGAATCTTTTTAGTTTTGTAAAGTCTTTATTTT
TAAAATACCTCTGATTAAAAAAATGTGCATAAATAAAATGCTGATACAGA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051012-exon-scaffold_192-1575043694:53155..53238TCONS_00051012-exon-scaffold_192-1575043694:53155..53238Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:51307..51411TCONS_00051012-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:51030..51126TCONS_00051012-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:50630..50805TCONS_00051012-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:50202..50324TCONS_00051012-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:49841..49975TCONS_00051012-exon-scaffold_192-1575043694:49841..49975Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:48696..48737TCONS_00051012-exon-scaffold_192-1575043694:48696..48737Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1575043694:45588..46314TCONS_00051012-exon-scaffold_192-1575043694:45588..46314Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:53155..53238TCONS_00051012-exon-scaffold_192-1510915933:53155..53238Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:51307..51411TCONS_00051012-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:51030..51126TCONS_00051012-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:50630..50805TCONS_00051012-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:50202..50324TCONS_00051012-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:49841..49975TCONS_00051012-exon-scaffold_192-1510915933:49841..49975Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:48696..48737TCONS_00051012-exon-scaffold_192-1510915933:48696..48737Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1510915933:45588..46314TCONS_00051012-exon-scaffold_192-1510915933:45588..46314Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:53155..53238TCONS_00051012-exon-scaffold_192-1491911889:53155..53238Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:51307..51411TCONS_00051012-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:51030..51126TCONS_00051012-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:50630..50805TCONS_00051012-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:50202..50324TCONS_00051012-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:49841..49975TCONS_00051012-exon-scaffold_192-1491911889:49841..49975Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:48696..48737TCONS_00051012-exon-scaffold_192-1491911889:48696..48737Clytia hemisphaericaexon
TCONS_00051012-exon-scaffold_192-1491911889:45588..46314TCONS_00051012-exon-scaffold_192-1491911889:45588..46314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:45588..53238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
169.115	223.226	114.962	62.9664	28.3575	5.78467	28.8649	2.73061	150.912	169.148	116.611	121.187	84.0482	47.9768	133.667	126.585	140.173	129.707	17.9516	36.0912	43.6268	51.5616	123.237	109.699	0.0419378	0.0110311	124.844	93.7456	81.8848	74.6712
Blast
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BLAST of TCONS_00051012 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 493.041 bits (1268), Expect = 2.537e-172
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 1 
Query:   91 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1083
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC2.537e-17269.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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